Wall clock time and date at job start Mon Mar 30 2020 04:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47282 * 2 1 4 4 H 1.08996 * 109.46706 * 304.23576 * 3 2 1 5 5 C 1.50698 * 109.47042 * 184.23702 * 3 2 1 6 6 H 1.07994 * 119.99857 * 239.99748 * 5 3 2 7 7 C 1.37878 * 119.99764 * 60.00193 * 5 3 2 8 8 N 1.31508 * 120.00519 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99712 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46968 * 59.99725 * 9 7 5 11 11 H 1.48494 * 109.46901 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47132 * 299.99895 * 9 7 5 13 13 N 1.46897 * 109.47191 * 64.23510 * 3 2 1 14 14 C 1.46898 * 111.00034 * 205.97608 * 13 3 2 15 15 C 1.52999 * 109.47039 * 174.62401 * 14 13 3 16 16 H 1.09001 * 110.02018 * 306.39225 * 15 14 13 17 17 C 1.54266 * 110.03419 * 67.83264 * 15 14 13 18 18 C 1.54888 * 104.19562 * 95.67461 * 17 15 14 19 19 C 1.54882 * 102.74963 * 37.94485 * 18 17 15 20 20 C 1.53878 * 110.03204 * 184.99892 * 15 14 13 21 21 H 1.08995 * 110.03359 * 359.97438 * 20 15 14 22 22 C 1.53001 * 110.03173 * 121.38108 * 20 15 14 23 23 O 1.42902 * 109.46923 * 184.99735 * 22 20 15 24 24 H 1.08994 * 109.46911 * 54.93929 * 1 2 3 25 25 H 1.09002 * 109.46715 * 174.94287 * 1 2 3 26 26 H 1.08997 * 109.46883 * 294.93531 * 1 2 3 27 27 H 1.09005 * 109.46935 * 119.99906 * 2 1 3 28 28 H 1.09003 * 109.47155 * 239.99641 * 2 1 3 29 29 H 0.97002 * 120.00301 * 179.97438 * 8 7 5 30 30 H 1.00900 * 110.99770 * 82.02033 * 13 3 2 31 31 H 1.09002 * 109.47086 * 294.61800 * 14 13 3 32 32 H 1.08995 * 109.47249 * 54.62246 * 14 13 3 33 33 H 1.09001 * 110.48810 * 214.35202 * 17 15 14 34 34 H 1.09003 * 110.48951 * 336.99365 * 17 15 14 35 35 H 1.09005 * 110.75609 * 279.62387 * 18 17 15 36 36 H 1.09003 * 110.91465 * 156.33619 * 18 17 15 37 37 H 1.09000 * 110.48573 * 203.38178 * 19 18 17 38 38 H 1.08993 * 110.49160 * 80.73818 * 19 18 17 39 39 H 1.08998 * 109.47122 * 304.99925 * 22 20 15 40 40 H 1.09001 * 109.47143 * 65.00092 * 22 20 15 41 41 H 0.96695 * 113.99926 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6161 1.9777 -0.8496 5 6 3.5434 1.4437 -0.1050 6 1 4.1389 1.8918 0.6767 7 6 4.1585 0.8729 -1.1990 8 7 3.4334 0.3270 -2.1506 9 14 6.0220 0.8751 -1.3295 10 1 6.6001 0.1463 -0.1719 11 1 6.4307 0.2050 -2.5900 12 1 6.5166 2.2754 -1.3298 13 7 1.6357 2.1049 1.2473 14 6 1.5367 3.5589 1.0630 15 6 0.9862 4.1983 2.3393 16 1 0.0503 3.7175 2.6239 17 6 2.0157 4.0702 3.4811 18 6 2.7783 5.4181 3.4579 19 6 1.6591 6.4386 3.1345 20 6 0.7595 5.7043 2.1189 21 1 1.0420 5.9796 1.1029 22 6 -0.7087 6.0552 2.3681 23 8 -0.9307 7.4301 2.0482 24 1 -0.3633 0.5903 -0.8412 25 1 -0.3633 -1.0237 -0.0906 26 1 -0.3633 0.4332 0.9319 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 3.8662 -0.0742 -2.9205 30 1 2.2693 1.8779 1.9990 31 1 2.5250 3.9662 0.8498 32 1 0.8672 3.7749 0.2305 33 1 1.5101 3.9343 4.4372 34 1 2.6981 3.2423 3.2884 35 1 3.5389 5.4182 2.6770 36 1 3.2247 5.6293 4.4297 37 1 2.0812 7.3392 2.6887 38 1 1.0959 6.6853 4.0345 39 1 -1.3434 5.4291 1.7409 40 1 -0.9507 5.8825 3.4168 41 1 -1.8425 7.7229 2.1823 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084315883.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:22 Heat of formation + Delta-G solvation = -82.709846 kcal Electronic energy + Delta-G solvation = -18151.994779 eV Core-core repulsion = 15451.301385 eV Total energy + Delta-G solvation = -2700.693394 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.97691 -36.49392 -35.58522 -32.46902 -31.17574 -29.98365 -28.58859 -26.18699 -24.78365 -22.98101 -22.08409 -20.13338 -19.41587 -19.09165 -17.11809 -16.72052 -15.54352 -15.26978 -14.81826 -14.36888 -14.03401 -13.63848 -13.34495 -12.91618 -12.47868 -12.28222 -12.10017 -11.82306 -11.26820 -11.21549 -10.97889 -10.81931 -10.78962 -10.72081 -10.61547 -10.41579 -10.34517 -10.18873 -9.97315 -9.88861 -9.56579 -9.36192 -9.02935 -8.35994 -7.19661 -5.97652 -4.10681 3.28865 3.34064 3.36418 4.19376 4.40732 4.76996 4.83061 5.00721 5.26315 5.34342 5.42655 5.48088 5.59517 5.71304 5.81715 5.83256 5.96171 5.99221 6.10012 6.16534 6.29072 6.40433 6.43758 6.50413 6.53372 6.56950 6.67069 6.73793 6.84591 7.17130 7.19413 7.47330 7.59408 7.62246 7.79668 8.11945 8.18724 8.36995 8.70800 9.02573 9.56827 11.02326 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023576 B = 0.006115 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.356371 B = 4577.661131 C = 5182.629913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.030 0.970 5 C -0.544 4.544 6 H 0.052 0.948 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.690 5.690 14 C 0.076 3.924 15 C -0.081 4.081 16 H 0.075 0.925 17 C -0.117 4.117 18 C -0.128 4.128 19 C -0.109 4.109 20 C -0.089 4.089 21 H 0.079 0.921 22 C 0.084 3.916 23 O -0.575 6.575 24 H 0.036 0.964 25 H 0.023 0.977 26 H 0.046 0.954 27 H 0.030 0.970 28 H 0.089 0.911 29 H 0.261 0.739 30 H 0.326 0.674 31 H 0.028 0.972 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.046 0.954 40 H 0.043 0.957 41 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.484 8.919 9.468 14.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.048 0.952 5 C -0.584 4.584 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.319 5.319 14 C -0.055 4.055 15 C -0.100 4.100 16 H 0.093 0.907 17 C -0.155 4.155 18 C -0.165 4.165 19 C -0.147 4.147 20 C -0.108 4.108 21 H 0.098 0.902 22 C 0.006 3.994 23 O -0.380 6.380 24 H 0.055 0.945 25 H 0.043 0.957 26 H 0.065 0.935 27 H 0.048 0.952 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.143 0.857 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -6.507 8.668 9.018 14.100 hybrid contribution 1.424 0.193 -0.131 1.443 sum -5.084 8.860 8.887 13.540 Atomic orbital electron populations 1.21682 0.99054 0.98192 1.00331 1.21499 0.92038 0.99320 1.01604 1.19136 0.92626 0.91123 0.86434 0.95164 1.21829 0.92756 1.37958 1.05809 0.92991 1.24927 0.97891 0.95013 0.95663 1.69865 1.34949 1.38033 1.09543 0.86732 0.86174 0.78164 0.77359 1.20292 1.21228 1.20426 1.60915 1.55149 1.06189 1.09687 1.21802 0.98698 0.90021 0.94931 1.21767 0.99165 0.92812 0.96259 0.90694 1.22380 0.97759 0.97436 0.97889 1.22536 0.97734 0.95268 1.00996 1.22310 0.96373 0.97766 0.98258 1.21823 0.93003 0.95311 1.00681 0.90236 1.22370 0.96860 0.81819 0.98342 1.86498 1.33398 1.27262 1.90835 0.94518 0.95744 0.93495 0.95151 0.89251 0.92849 0.85723 0.95401 0.92376 0.92196 0.91123 0.91455 0.92133 0.92015 0.92094 0.93563 0.93869 0.78008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.73 37.16 0.36 -2.44 16 2 C -0.11 -2.56 5.45 -26.73 -0.15 -2.70 16 3 C 0.21 5.32 1.98 -68.87 -0.14 5.19 16 4 H 0.03 0.84 7.70 -51.93 -0.40 0.44 16 5 C -0.54 -14.70 8.48 -34.44 -0.29 -14.99 16 6 H 0.05 1.39 7.73 -52.49 -0.41 0.99 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 8 N -0.89 -25.16 11.29 55.43 0.63 -24.53 16 9 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.69 -14.30 5.73 -107.96 -0.62 -14.92 16 14 C 0.08 1.41 4.67 -3.83 -0.02 1.39 16 15 C -0.08 -1.20 2.81 -89.50 -0.25 -1.45 16 16 H 0.07 1.10 7.67 -51.93 -0.40 0.71 16 17 C -0.12 -1.62 6.25 -25.07 -0.16 -1.77 16 18 C -0.13 -1.66 6.91 -24.74 -0.17 -1.83 16 19 C -0.11 -1.39 6.22 -25.08 -0.16 -1.54 16 20 C -0.09 -1.22 2.84 -89.50 -0.25 -1.47 16 21 H 0.08 1.21 7.67 -51.93 -0.40 0.82 16 22 C 0.08 0.99 6.10 37.16 0.23 1.21 16 23 O -0.58 -6.72 13.51 -35.23 -0.48 -7.19 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.92 7.87 -51.93 -0.41 0.52 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.09 2.40 5.97 -51.93 -0.31 2.09 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.33 6.69 6.85 -39.29 -0.27 6.42 16 31 H 0.03 0.57 8.12 -51.93 -0.42 0.15 16 32 H 0.06 1.13 7.92 -51.93 -0.41 0.72 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 1.07 6.42 -51.93 -0.33 0.74 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.72 7.76 -51.93 -0.40 0.32 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.04 0.46 8.01 -51.93 -0.42 0.04 16 41 H 0.37 2.56 9.12 45.56 0.42 2.97 16 LS Contribution 320.37 15.07 4.83 4.83 Total: -1.00 -28.70 320.37 -8.43 -37.13 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -6.68 Total: 7.12 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: -1.09 Total: -18.64 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.01 Total: -39.46 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.48 Total: -7.19 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.70 -8.43 -37.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084315883.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.585 kcal (2) G-P(sol) polarization free energy of solvation -28.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds