Wall clock time and date at job start Mon Mar 30 2020 04:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47392 * 2 1 4 4 H 1.08999 * 109.46999 * 184.08710 * 3 2 1 5 5 C 1.53003 * 109.46798 * 304.08309 * 3 2 1 6 6 C 1.53000 * 109.47407 * 293.79245 * 5 3 2 7 7 O 1.42891 * 109.47380 * 185.14702 * 6 5 3 8 8 C 1.52999 * 109.47416 * 64.08143 * 3 2 1 9 9 N 1.46897 * 109.46619 * 62.40017 * 8 3 2 10 10 C 1.46903 * 111.00007 * 183.71107 * 9 8 3 11 11 C 1.52998 * 109.47594 * 175.32862 * 10 9 8 12 12 C 1.50698 * 115.55069 * 58.50236 * 11 10 9 13 13 H 1.08002 * 120.00235 * 214.88906 * 12 11 10 14 14 C 1.37874 * 119.99792 * 35.16842 * 12 11 10 15 15 N 1.31518 * 120.00138 * 9.78856 * 14 12 11 16 16 Si 1.86802 * 119.99849 * 189.78985 * 14 12 11 17 17 H 1.48501 * 109.47034 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47030 * 119.99980 * 16 14 12 19 19 H 1.48500 * 109.47310 * 239.99781 * 16 14 12 20 20 C 1.52993 * 117.49873 * 204.17716 * 11 10 9 21 21 C 1.53005 * 117.49581 * 272.83746 * 11 10 9 22 22 H 1.09005 * 109.46796 * 305.39010 * 1 2 3 23 23 H 1.08993 * 109.46954 * 65.38514 * 1 2 3 24 24 H 1.08997 * 109.46985 * 185.39255 * 1 2 3 25 25 H 1.09000 * 109.46922 * 239.99534 * 2 1 3 26 26 H 1.09001 * 109.47033 * 120.00259 * 2 1 3 27 27 H 1.09001 * 109.47449 * 53.79223 * 5 3 2 28 28 H 1.09002 * 109.47024 * 173.79728 * 5 3 2 29 29 H 1.09003 * 109.47229 * 305.14793 * 6 5 3 30 30 H 1.09004 * 109.47133 * 65.13836 * 6 5 3 31 31 H 0.96704 * 114.00324 * 180.02562 * 7 6 5 32 32 H 1.09003 * 109.46976 * 302.40742 * 8 3 2 33 33 H 1.08994 * 109.47272 * 182.40074 * 8 3 2 34 34 H 1.00895 * 111.00682 * 307.66140 * 9 8 3 35 35 H 1.09002 * 109.47353 * 55.31982 * 10 9 8 36 36 H 1.09004 * 109.46915 * 295.32720 * 10 9 8 37 37 H 0.97002 * 119.99489 * 184.99575 * 15 14 12 38 38 H 1.09000 * 117.50133 * 215.00119 * 20 11 10 39 39 H 1.09003 * 117.50188 * 0.02562 * 20 11 10 40 40 H 1.08995 * 117.49776 * 359.97382 * 21 11 10 41 41 H 1.09000 * 117.49738 * 144.97408 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1276 1.4433 -0.0732 5 6 1.4479 2.1927 -1.1948 6 6 1.9958 1.5974 -2.4933 7 8 1.5380 2.3724 -3.6031 8 6 1.6157 2.1335 1.2974 9 7 2.2309 1.4475 2.4414 10 6 1.7758 2.0294 3.7111 11 6 2.3440 1.2177 4.8769 12 6 3.8471 1.1262 4.9336 13 1 4.3201 0.2221 5.2877 14 6 4.6184 2.1986 4.5388 15 7 4.0534 3.3615 4.2974 16 14 6.4659 2.0000 4.3469 17 1 6.8505 0.6041 4.6765 18 1 6.8534 2.3031 2.9458 19 1 7.1625 2.9351 5.2665 20 6 1.5886 1.2670 6.2065 21 6 1.5439 0.0011 5.3469 22 1 -0.3633 0.5952 0.8378 23 1 -0.3633 0.4280 -0.9342 24 1 -0.3633 -1.0231 0.0966 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 0.3621 2.0981 -1.1814 28 1 1.7216 3.2461 -1.1342 29 1 3.0854 1.6088 -2.4670 30 1 1.6458 0.5704 -2.5982 31 1 1.8472 2.0515 -4.4613 32 1 0.5304 2.0950 1.3914 33 1 1.9422 3.1733 1.2788 34 1 2.0454 0.4562 2.4110 35 1 0.6866 2.0087 3.7506 36 1 2.1223 3.0603 3.7832 37 1 4.5840 4.0957 3.9504 38 1 2.1788 1.2333 7.1222 39 1 0.6865 1.8773 6.2506 40 1 0.6126 -0.2206 4.8258 41 1 2.1048 -0.8655 5.6968 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087367171.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:37 Heat of formation + Delta-G solvation = -40.675508 kcal Electronic energy + Delta-G solvation = -18149.739268 eV Core-core repulsion = 15450.868620 eV Total energy + Delta-G solvation = -2698.870648 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.31174 -36.91774 -36.05153 -32.87863 -31.95631 -30.24959 -27.49675 -25.44597 -24.18967 -23.63185 -21.74392 -21.00977 -19.00755 -18.68115 -17.35500 -16.27633 -15.87367 -15.21712 -14.55768 -14.25196 -14.07876 -13.75196 -13.56216 -13.10618 -12.82779 -12.47710 -12.07331 -11.75271 -11.49518 -11.29768 -11.24698 -11.08863 -10.84741 -10.52653 -10.44328 -10.34188 -10.26227 -10.14954 -9.94037 -9.88080 -9.16489 -8.95558 -8.62053 -7.92149 -7.17900 -5.84974 -3.89102 3.37752 3.46042 3.49503 4.14887 4.52921 4.94648 4.98636 5.10091 5.18565 5.28844 5.35567 5.42131 5.47186 5.69254 5.76978 5.80239 5.88124 6.00087 6.08219 6.12602 6.17703 6.24245 6.35949 6.41616 6.49254 6.61522 6.65107 6.71099 6.76219 6.86561 6.99120 7.21280 7.37473 7.53720 7.74309 8.13280 8.28237 8.45986 8.69127 9.05444 9.71716 11.15499 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021338 B = 0.006652 C = 0.005575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.873548 B = 4208.166445 C = 5021.232573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.123 4.123 3 C -0.083 4.083 4 H 0.080 0.920 5 C -0.116 4.116 6 C 0.075 3.925 7 O -0.578 6.578 8 C 0.069 3.931 9 N -0.656 5.656 10 C 0.100 3.900 11 C 0.061 3.939 12 C -0.476 4.476 13 H 0.054 0.946 14 C 0.087 3.913 15 N -0.871 5.871 16 Si 0.888 3.112 17 H -0.276 1.276 18 H -0.283 1.283 19 H -0.289 1.289 20 C -0.206 4.206 21 C -0.219 4.219 22 H 0.057 0.943 23 H 0.053 0.947 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.375 0.625 32 H 0.016 0.984 33 H 0.066 0.934 34 H 0.323 0.677 35 H -0.022 1.022 36 H 0.120 0.880 37 H 0.257 0.743 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.229 -3.915 -11.508 13.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.161 4.161 3 C -0.102 4.102 4 H 0.098 0.902 5 C -0.154 4.154 6 C -0.002 4.002 7 O -0.383 6.383 8 C -0.061 4.061 9 N -0.286 5.286 10 C -0.028 4.028 11 C 0.060 3.940 12 C -0.513 4.513 13 H 0.072 0.928 14 C -0.116 4.116 15 N -0.509 5.509 16 Si 0.717 3.283 17 H -0.201 1.201 18 H -0.209 1.209 19 H -0.216 1.216 20 C -0.245 4.245 21 C -0.256 4.256 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.221 0.779 32 H 0.033 0.967 33 H 0.084 0.916 34 H 0.141 0.859 35 H -0.004 1.004 36 H 0.138 0.862 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.877 -2.981 -11.032 12.425 hybrid contribution 0.264 -0.848 -0.456 0.998 sum -4.614 -3.830 -11.488 12.958 Atomic orbital electron populations 1.21899 0.96427 1.01165 1.01845 1.21596 0.95662 0.96808 1.02006 1.21119 1.00980 0.94369 0.93751 0.90210 1.21588 1.01242 1.00476 0.92086 1.22283 0.97598 0.93808 0.86510 1.86482 1.77082 1.57555 1.17191 1.21902 0.95220 0.98718 0.90286 1.60305 1.61155 1.06069 1.01089 1.21720 0.90926 1.03267 0.86918 1.19033 0.93206 0.92017 0.89739 1.20339 0.88246 0.99152 1.43545 0.92790 1.24733 0.97901 0.94542 0.94384 1.69791 1.35599 1.01534 1.43934 0.86624 0.86250 0.77847 0.77613 1.20058 1.20943 1.21587 1.22949 1.02503 1.00620 0.98430 1.22907 1.01836 0.93115 1.07762 0.92368 0.92810 0.93266 0.92512 0.91038 0.91166 0.91288 0.93681 0.93670 0.77884 0.96651 0.91571 0.85890 1.00422 0.86243 0.93313 0.90508 0.92013 0.92019 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.14 37.16 0.34 -1.57 16 2 C -0.12 -1.61 5.22 -26.73 -0.14 -1.75 16 3 C -0.08 -1.22 2.38 -90.62 -0.22 -1.43 16 4 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 5 C -0.12 -1.53 4.77 -26.73 -0.13 -1.66 16 6 C 0.08 0.86 6.70 37.16 0.25 1.11 16 7 O -0.58 -6.67 13.66 -35.23 -0.48 -7.15 16 8 C 0.07 1.21 4.99 -3.83 -0.02 1.19 16 9 N -0.66 -13.81 6.33 -113.78 -0.72 -14.53 16 10 C 0.10 2.35 4.86 -3.82 -0.02 2.33 16 11 C 0.06 1.51 1.95 -155.66 -0.30 1.20 16 12 C -0.48 -12.97 8.82 -34.44 -0.30 -13.27 16 13 H 0.05 1.49 7.83 -52.49 -0.41 1.08 16 14 C 0.09 2.38 5.26 -17.82 -0.09 2.28 16 15 N -0.87 -24.12 10.64 55.43 0.59 -23.53 16 16 Si 0.89 21.40 29.55 -169.99 -5.02 16.38 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 C -0.21 -4.78 9.95 -26.70 -0.27 -5.05 16 21 C -0.22 -4.81 9.94 -26.69 -0.27 -5.08 16 22 H 0.06 0.78 6.25 -51.93 -0.32 0.46 16 23 H 0.05 0.61 6.54 -51.93 -0.34 0.27 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.66 6.92 -51.93 -0.36 0.30 16 26 H 0.07 1.03 6.35 -51.93 -0.33 0.70 16 27 H 0.07 0.92 6.13 -51.93 -0.32 0.60 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.46 6.95 -51.93 -0.36 0.10 16 31 H 0.38 2.49 9.12 45.56 0.42 2.91 16 32 H 0.02 0.27 6.29 -51.93 -0.33 -0.06 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.32 6.50 6.60 -39.29 -0.26 6.25 16 35 H -0.02 -0.50 8.08 -51.93 -0.42 -0.92 16 36 H 0.12 3.16 5.73 -51.93 -0.30 2.86 16 37 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 38 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 39 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 319.87 15.07 4.82 4.82 Total: -1.00 -28.86 319.87 -8.25 -37.11 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -6.27 Total: 8.59 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: -1.16 Total: -21.68 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: -0.13 Total: -38.06 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.48 Total: -7.15 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.86 -8.25 -37.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087367171.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.565 kcal (2) G-P(sol) polarization free energy of solvation -28.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds