Wall clock time and date at job start Mon Mar 30 2020 04:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47392 * 2 1 4 4 H 1.08999 * 109.46999 * 184.08710 * 3 2 1 5 5 C 1.53003 * 109.46798 * 304.08309 * 3 2 1 6 6 C 1.53000 * 109.47407 * 293.79245 * 5 3 2 7 7 O 1.42891 * 109.47380 * 185.14702 * 6 5 3 8 8 C 1.52999 * 109.47416 * 64.08143 * 3 2 1 9 9 N 1.46897 * 109.46619 * 62.40017 * 8 3 2 10 10 C 1.46903 * 111.00007 * 183.71107 * 9 8 3 11 11 C 1.52998 * 109.47594 * 175.32862 * 10 9 8 12 12 C 1.50698 * 115.55069 * 58.50236 * 11 10 9 13 13 H 1.08002 * 120.00235 * 214.88906 * 12 11 10 14 14 C 1.37874 * 119.99792 * 35.16842 * 12 11 10 15 15 N 1.31518 * 120.00138 * 9.78856 * 14 12 11 16 16 Si 1.86802 * 119.99849 * 189.78985 * 14 12 11 17 17 H 1.48501 * 109.47034 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47030 * 119.99980 * 16 14 12 19 19 H 1.48500 * 109.47310 * 239.99781 * 16 14 12 20 20 C 1.52993 * 117.49873 * 204.17716 * 11 10 9 21 21 C 1.53005 * 117.49581 * 272.83746 * 11 10 9 22 22 H 1.09005 * 109.46796 * 305.39010 * 1 2 3 23 23 H 1.08993 * 109.46954 * 65.38514 * 1 2 3 24 24 H 1.08997 * 109.46985 * 185.39255 * 1 2 3 25 25 H 1.09000 * 109.46922 * 239.99534 * 2 1 3 26 26 H 1.09001 * 109.47033 * 120.00259 * 2 1 3 27 27 H 1.09001 * 109.47449 * 53.79223 * 5 3 2 28 28 H 1.09002 * 109.47024 * 173.79728 * 5 3 2 29 29 H 1.09003 * 109.47229 * 305.14793 * 6 5 3 30 30 H 1.09004 * 109.47133 * 65.13836 * 6 5 3 31 31 H 0.96704 * 114.00324 * 180.02562 * 7 6 5 32 32 H 1.09003 * 109.46976 * 302.40742 * 8 3 2 33 33 H 1.08994 * 109.47272 * 182.40074 * 8 3 2 34 34 H 1.00895 * 111.00682 * 307.66140 * 9 8 3 35 35 H 1.09002 * 109.47353 * 55.31982 * 10 9 8 36 36 H 1.09004 * 109.46915 * 295.32720 * 10 9 8 37 37 H 0.97002 * 119.99489 * 184.99575 * 15 14 12 38 38 H 1.09000 * 117.50133 * 215.00119 * 20 11 10 39 39 H 1.09003 * 117.50188 * 0.02562 * 20 11 10 40 40 H 1.08995 * 117.49776 * 359.97382 * 21 11 10 41 41 H 1.09000 * 117.49738 * 144.97408 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1276 1.4433 -0.0732 5 6 1.4479 2.1927 -1.1948 6 6 1.9958 1.5974 -2.4933 7 8 1.5380 2.3724 -3.6031 8 6 1.6157 2.1335 1.2974 9 7 2.2309 1.4475 2.4414 10 6 1.7758 2.0294 3.7111 11 6 2.3440 1.2177 4.8769 12 6 3.8471 1.1262 4.9336 13 1 4.3201 0.2221 5.2877 14 6 4.6184 2.1986 4.5388 15 7 4.0534 3.3615 4.2974 16 14 6.4659 2.0000 4.3469 17 1 6.8505 0.6041 4.6765 18 1 6.8534 2.3031 2.9458 19 1 7.1625 2.9351 5.2665 20 6 1.5886 1.2670 6.2065 21 6 1.5439 0.0011 5.3469 22 1 -0.3633 0.5952 0.8378 23 1 -0.3633 0.4280 -0.9342 24 1 -0.3633 -1.0231 0.0966 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 0.3621 2.0981 -1.1814 28 1 1.7216 3.2461 -1.1342 29 1 3.0854 1.6088 -2.4670 30 1 1.6458 0.5704 -2.5982 31 1 1.8472 2.0515 -4.4613 32 1 0.5304 2.0950 1.3914 33 1 1.9422 3.1733 1.2788 34 1 2.0454 0.4562 2.4110 35 1 0.6866 2.0087 3.7506 36 1 2.1223 3.0603 3.7832 37 1 4.5840 4.0957 3.9504 38 1 2.1788 1.2333 7.1222 39 1 0.6865 1.8773 6.2506 40 1 0.6126 -0.2206 4.8258 41 1 2.1048 -0.8655 5.6968 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087367171.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:37 Heat of formation + Delta-G solvation = -59.944427 kcal Electronic energy + Delta-G solvation = -18150.574831 eV Core-core repulsion = 15450.868620 eV Total energy + Delta-G solvation = -2699.706211 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.56414 -38.48970 -37.19218 -34.40343 -33.99985 -31.24810 -28.87153 -27.44399 -25.62840 -24.86680 -23.13365 -22.70587 -20.84736 -19.91176 -18.42950 -17.98236 -17.04973 -16.65767 -16.44371 -15.64601 -15.43495 -15.19022 -14.77798 -14.75084 -14.26753 -13.75719 -13.54332 -13.18677 -12.97694 -12.80004 -12.76687 -12.48053 -12.41178 -12.24647 -12.18022 -11.95422 -11.54689 -11.41009 -11.27702 -11.02649 -10.93569 -10.76203 -10.51038 -9.89982 -8.84127 -7.89496 -6.00165 1.44782 1.48815 1.57288 2.52668 3.09469 3.25553 3.68794 3.84869 3.89617 4.00533 4.15859 4.28486 4.38309 4.43284 4.52940 4.56730 4.58201 4.72396 4.76969 4.83393 4.85871 4.89252 4.94930 5.00726 5.07969 5.12676 5.15604 5.27338 5.34719 5.38238 5.46705 5.55027 5.60568 5.70756 6.13750 6.47053 6.61229 6.92310 6.97939 6.99712 7.62108 9.07760 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021338 B = 0.006652 C = 0.005575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.873548 B = 4208.166445 C = 5021.232573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.073 4.073 4 H 0.064 0.936 5 C -0.112 4.112 6 C 0.079 3.921 7 O -0.596 6.596 8 C 0.072 3.928 9 N -0.667 5.667 10 C 0.112 3.888 11 C 0.029 3.971 12 C -0.491 4.491 13 H 0.042 0.958 14 C 0.049 3.951 15 N -0.890 5.890 16 Si 0.941 3.059 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.288 1.288 20 C -0.209 4.209 21 C -0.193 4.193 22 H 0.041 0.959 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.396 0.604 32 H 0.024 0.976 33 H 0.043 0.957 34 H 0.329 0.671 35 H -0.015 1.015 36 H 0.088 0.912 37 H 0.255 0.745 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.692 -5.186 -12.773 14.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.092 4.092 4 H 0.083 0.917 5 C -0.150 4.150 6 C 0.002 3.998 7 O -0.405 6.405 8 C -0.057 4.057 9 N -0.298 5.298 10 C -0.017 4.017 11 C 0.028 3.972 12 C -0.528 4.528 13 H 0.060 0.940 14 C -0.152 4.152 15 N -0.528 5.528 16 Si 0.769 3.231 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.215 1.215 20 C -0.247 4.247 21 C -0.230 4.230 22 H 0.061 0.939 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.097 0.903 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.246 0.754 32 H 0.042 0.958 33 H 0.062 0.938 34 H 0.148 0.852 35 H 0.002 0.998 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.338 -4.267 -12.312 14.082 hybrid contribution 0.381 -0.448 -0.057 0.591 sum -4.957 -4.714 -12.369 14.135 Atomic orbital electron populations 1.21856 0.95487 1.01811 1.01721 1.21563 0.96396 0.95332 1.02350 1.20980 1.00105 0.95501 0.92653 0.91723 1.21501 1.01382 0.99440 0.92665 1.22191 0.97637 0.94334 0.85632 1.86421 1.77430 1.58165 1.18441 1.21890 0.95492 0.97576 0.90776 1.60198 1.61976 1.06571 1.01071 1.21404 0.90969 1.01474 0.87833 1.19150 0.92531 0.94577 0.90934 1.20521 0.89897 0.98662 1.43753 0.93964 1.25301 1.01110 0.94384 0.94440 1.69932 1.36533 1.01850 1.44503 0.85795 0.82330 0.77690 0.77333 1.19811 1.20906 1.21464 1.22943 1.02536 1.01783 0.97460 1.22884 1.01892 0.92187 1.06080 0.93944 0.91740 0.91943 0.90331 0.92484 0.90804 0.92889 0.93452 0.91857 0.75390 0.95765 0.93841 0.85210 0.99763 0.89377 0.93562 0.91310 0.90854 0.89825 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.14 71.98 0.66 -2.67 16 2 C -0.12 -2.87 5.22 30.59 0.16 -2.71 16 3 C -0.07 -2.08 2.38 -10.79 -0.03 -2.11 16 4 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 5 C -0.11 -2.81 4.77 30.60 0.15 -2.66 16 6 C 0.08 1.63 6.70 71.98 0.48 2.12 16 7 O -0.60 -12.41 13.66 -148.98 -2.03 -14.44 16 8 C 0.07 2.56 4.99 86.30 0.43 2.99 16 9 N -0.67 -28.11 6.33 -513.89 -3.25 -31.37 16 10 C 0.11 5.30 4.86 86.30 0.42 5.72 16 11 C 0.03 1.42 1.95 -52.93 -0.10 1.31 16 12 C -0.49 -26.87 8.82 25.60 0.23 -26.64 16 13 H 0.04 2.35 7.83 -2.91 -0.02 2.32 16 14 C 0.05 2.66 5.26 84.65 0.45 3.10 16 15 N -0.89 -50.06 10.64 21.45 0.23 -49.83 16 16 Si 0.94 44.17 29.55 68.60 2.03 46.19 16 17 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 19 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 20 C -0.21 -9.50 9.95 30.62 0.30 -9.20 16 21 C -0.19 -8.17 9.94 30.62 0.30 -7.87 16 22 H 0.04 1.06 6.25 -2.38 -0.01 1.05 16 23 H 0.06 1.28 6.54 -2.39 -0.02 1.26 16 24 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.08 1.57 6.92 -2.39 -0.02 1.56 16 26 H 0.06 1.56 6.35 -2.39 -0.02 1.54 16 27 H 0.07 1.80 6.13 -2.39 -0.01 1.78 16 28 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 1.08 6.95 -2.39 -0.02 1.06 16 31 H 0.40 4.24 9.12 -74.05 -0.68 3.57 16 32 H 0.02 0.82 6.29 -2.39 -0.01 0.81 16 33 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.33 13.07 6.60 -89.70 -0.59 12.48 16 35 H -0.02 -0.69 8.08 -2.39 -0.02 -0.71 16 36 H 0.09 4.77 5.73 -2.38 -0.01 4.75 16 37 H 0.25 13.86 8.32 -92.71 -0.77 13.09 16 38 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 39 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 40 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 41 H 0.08 3.16 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -60.85 319.87 0.16 -60.69 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: -0.26 Total: 27.38 kcal Atomic # 6 Polarization: -42.08 SS G_CDS: 3.45 Total: -38.63 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -3.03 Total: -81.20 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -2.03 Total: -14.44 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -60.85 0.16 -60.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087367171.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.750 kcal (2) G-P(sol) polarization free energy of solvation -60.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds