Wall clock time and date at job start Mon Mar 30 2020 04:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47148 * 2 1 4 4 H 1.09001 * 109.46980 * 301.82800 * 3 2 1 5 5 C 1.53000 * 109.47146 * 181.83033 * 3 2 1 6 6 C 1.52996 * 109.47148 * 64.99837 * 5 3 2 7 7 O 1.42901 * 109.47213 * 180.02562 * 6 5 3 8 8 C 1.53001 * 109.47221 * 61.82911 * 3 2 1 9 9 N 1.46898 * 109.46872 * 177.78444 * 8 3 2 10 10 C 1.46903 * 110.99657 * 185.11749 * 9 8 3 11 11 C 1.52997 * 109.47051 * 184.65936 * 10 9 8 12 12 C 1.50704 * 115.55160 * 294.22428 * 11 10 9 13 13 H 1.07999 * 120.00187 * 95.35146 * 12 11 10 14 14 C 1.37881 * 120.00429 * 275.36117 * 12 11 10 15 15 N 1.31517 * 119.99434 * 6.21768 * 14 12 11 16 16 Si 1.86790 * 120.00228 * 186.22215 * 14 12 11 17 17 H 1.48496 * 109.47266 * 179.97438 * 16 14 12 18 18 H 1.48498 * 109.47234 * 299.99860 * 16 14 12 19 19 H 1.48505 * 109.46790 * 59.99883 * 16 14 12 20 20 C 1.52995 * 117.50401 * 79.89541 * 11 10 9 21 21 C 1.52999 * 117.50208 * 148.55931 * 11 10 9 22 22 H 1.09002 * 109.46841 * 304.16226 * 1 2 3 23 23 H 1.09003 * 109.46758 * 64.15963 * 1 2 3 24 24 H 1.09001 * 109.46688 * 184.15743 * 1 2 3 25 25 H 1.09004 * 109.46876 * 239.99842 * 2 1 3 26 26 H 1.08999 * 109.46935 * 119.99715 * 2 1 3 27 27 H 1.08993 * 109.46950 * 184.99852 * 5 3 2 28 28 H 1.08996 * 109.47008 * 304.99774 * 5 3 2 29 29 H 1.09001 * 109.47487 * 300.00034 * 6 5 3 30 30 H 1.08996 * 109.47218 * 60.00065 * 6 5 3 31 31 H 0.96695 * 114.00179 * 179.97438 * 7 6 5 32 32 H 1.08995 * 109.47020 * 57.77961 * 8 3 2 33 33 H 1.09003 * 109.46918 * 297.78307 * 8 3 2 34 34 H 1.00905 * 111.00093 * 61.16922 * 9 8 3 35 35 H 1.09005 * 109.47168 * 64.65877 * 10 9 8 36 36 H 1.08997 * 109.47183 * 304.66146 * 10 9 8 37 37 H 0.96998 * 120.00559 * 355.23676 * 15 14 12 38 38 H 1.09000 * 117.50453 * 215.00374 * 20 11 10 39 39 H 1.09007 * 117.49363 * 0.02619 * 20 11 10 40 40 H 1.09000 * 117.49457 * 359.97172 * 21 11 10 41 41 H 1.08994 * 117.50233 * 144.97062 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6502 1.9657 -0.8732 5 6 3.5694 1.4427 -0.0461 6 6 4.0397 0.8471 -1.3746 7 8 5.4681 0.8468 -1.4173 8 6 1.5680 2.1504 1.2716 9 7 2.1018 3.5187 1.2971 10 6 1.7700 4.1896 2.5612 11 6 2.2393 5.6447 2.5047 12 6 3.7313 5.8441 2.4310 13 1 4.2114 5.9797 1.4732 14 6 4.4836 5.8532 3.5865 15 7 3.9204 5.5668 4.7400 16 14 6.3024 6.2722 3.5136 17 1 6.8792 6.2131 4.8807 18 1 7.0006 5.2963 2.6387 19 1 6.4733 7.6410 2.9635 20 6 1.3554 6.6437 1.7553 21 6 1.4260 6.6802 3.2839 22 1 -0.3633 0.5771 0.8504 23 1 -0.3633 0.4479 -0.9250 24 1 -0.3633 -1.0250 0.0745 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.9354 2.4655 0.0434 28 1 3.9578 0.8445 0.7781 29 1 3.6737 -0.1757 -1.4641 30 1 3.6513 1.4454 -2.1987 31 1 5.8370 0.4817 -2.2332 32 1 1.9250 1.6047 2.1450 33 1 0.4786 2.1849 1.2851 34 1 1.7695 4.0512 0.5071 35 1 2.2681 3.6789 3.3853 36 1 0.6913 4.1615 2.7152 37 1 2.9633 5.4171 4.7886 38 1 1.8529 7.4450 1.2089 39 1 0.4392 6.2642 1.3028 40 1 0.5563 6.3248 3.8365 41 1 1.9700 7.5053 3.7436 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087367173.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:41 Heat of formation + Delta-G solvation = -53.161247 kcal Electronic energy + Delta-G solvation = -17967.142706 eV Core-core repulsion = 15267.730636 eV Total energy + Delta-G solvation = -2699.412070 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.18308 -37.07496 -36.05306 -33.31672 -31.70857 -30.75940 -27.51376 -25.07689 -24.28751 -22.68491 -22.22636 -21.15628 -19.84593 -19.11802 -17.28363 -16.51317 -15.29628 -15.07636 -14.90336 -14.56363 -13.63417 -13.62116 -13.60651 -13.22448 -13.03046 -12.72887 -12.25989 -12.06254 -11.71205 -11.40203 -11.25202 -11.12451 -10.77463 -10.69655 -10.52197 -10.43580 -10.38603 -10.23774 -10.00529 -9.71925 -9.40942 -8.43715 -8.34498 -8.18529 -7.53114 -6.19765 -3.89619 3.53407 3.56604 3.73759 4.31676 4.61514 4.67829 4.90901 5.01212 5.17633 5.25479 5.33357 5.38636 5.46897 5.49028 5.60576 5.73677 5.78819 5.86048 5.95420 5.99185 6.03677 6.13410 6.22420 6.23514 6.31607 6.36897 6.42538 6.58244 6.60594 6.73362 6.84438 6.92706 7.29012 7.39968 7.72278 7.89865 8.12943 8.43527 8.59218 9.03441 9.82132 11.20242 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.018395 B = 0.006922 C = 0.005513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.761150 B = 4044.302696 C = 5077.536715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C -0.078 4.078 4 H 0.065 0.935 5 C -0.110 4.110 6 C 0.075 3.925 7 O -0.572 6.572 8 C 0.063 3.937 9 N -0.665 5.665 10 C 0.104 3.896 11 C 0.029 3.971 12 C -0.548 4.548 13 H 0.052 0.948 14 C 0.024 3.976 15 N -0.913 5.913 16 Si 1.065 2.935 17 H -0.285 1.285 18 H -0.287 1.287 19 H -0.290 1.290 20 C -0.201 4.201 21 C -0.182 4.182 22 H 0.058 0.942 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.095 0.905 28 H 0.064 0.936 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.372 0.628 32 H 0.067 0.933 33 H 0.021 0.979 34 H 0.331 0.669 35 H 0.068 0.932 36 H -0.006 1.006 37 H 0.272 0.728 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.115 -9.904 -10.775 15.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.097 4.097 4 H 0.084 0.916 5 C -0.147 4.147 6 C -0.003 4.003 7 O -0.376 6.376 8 C -0.067 4.067 9 N -0.294 5.294 10 C -0.025 4.025 11 C 0.028 3.972 12 C -0.586 4.586 13 H 0.070 0.930 14 C -0.180 4.180 15 N -0.549 5.549 16 Si 0.894 3.106 17 H -0.211 1.211 18 H -0.214 1.214 19 H -0.217 1.217 20 C -0.238 4.238 21 C -0.220 4.220 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.114 0.886 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.218 0.782 32 H 0.085 0.915 33 H 0.039 0.961 34 H 0.148 0.852 35 H 0.087 0.913 36 H 0.012 0.988 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.189 -9.720 -9.016 13.635 hybrid contribution -2.478 -0.199 -1.634 2.975 sum -5.667 -9.919 -10.649 15.617 Atomic orbital electron populations 1.21850 0.96195 1.01249 1.01934 1.21646 0.95641 0.96746 1.01934 1.21065 0.95257 0.95037 0.98308 0.91635 1.21459 0.94077 1.03977 0.95231 1.22345 0.80507 0.98633 0.98796 1.86569 1.20827 1.86696 1.43539 1.22000 0.95684 0.91508 0.97462 1.60232 1.63040 1.01349 1.04807 1.21600 0.93716 0.95885 0.91302 1.19160 0.93919 0.86257 0.97889 1.21122 0.89314 1.53235 0.94921 0.92996 1.25681 1.05917 0.93883 0.92501 1.70738 1.13722 1.43704 1.26753 0.83604 0.75058 0.76277 0.75689 1.21058 1.21357 1.21723 1.22862 1.01218 1.05289 0.94438 1.22773 1.01889 1.04693 0.92648 0.92316 0.93010 0.93125 0.92061 0.91851 0.88627 0.91735 0.94320 0.94233 0.78237 0.91494 0.96074 0.85170 0.91315 0.98778 0.91718 0.90218 0.92041 0.91838 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.71 37.16 0.36 -1.20 16 2 C -0.12 -1.34 5.24 -26.73 -0.14 -1.48 16 3 C -0.08 -1.04 2.13 -90.62 -0.19 -1.23 16 4 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 5 C -0.11 -1.68 4.95 -26.73 -0.13 -1.81 16 6 C 0.07 0.94 6.80 37.16 0.25 1.20 16 7 O -0.57 -7.91 13.66 -35.23 -0.48 -8.39 16 8 C 0.06 1.00 4.78 -3.82 -0.02 0.99 16 9 N -0.66 -12.98 5.47 -113.78 -0.62 -13.60 16 10 C 0.10 2.32 5.44 -3.82 -0.02 2.30 16 11 C 0.03 0.70 1.01 -155.66 -0.16 0.54 16 12 C -0.55 -15.35 8.75 -34.44 -0.30 -15.65 16 13 H 0.05 1.49 7.82 -52.49 -0.41 1.08 16 14 C 0.02 0.70 5.39 -17.82 -0.10 0.61 16 15 N -0.91 -27.44 13.57 55.43 0.75 -26.69 16 16 Si 1.06 25.92 29.91 -169.99 -5.08 20.83 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 C -0.20 -4.38 9.96 -26.70 -0.27 -4.65 16 21 C -0.18 -4.26 8.68 -26.69 -0.23 -4.49 16 22 H 0.06 0.64 6.32 -51.93 -0.33 0.31 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.61 6.48 -51.93 -0.34 0.27 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.10 1.79 7.38 -51.93 -0.38 1.41 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.04 0.42 6.53 -51.93 -0.34 0.08 16 30 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.37 3.13 9.12 45.56 0.42 3.54 16 32 H 0.07 1.14 8.13 -51.93 -0.42 0.71 16 33 H 0.02 0.32 6.50 -51.93 -0.34 -0.02 16 34 H 0.33 6.21 8.72 -39.29 -0.34 5.86 16 35 H 0.07 1.73 7.94 -51.93 -0.41 1.31 16 36 H -0.01 -0.12 8.08 -51.93 -0.42 -0.54 16 37 H 0.27 8.07 6.26 -40.82 -0.26 7.81 16 38 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 41 H 0.08 2.10 8.14 -51.93 -0.42 1.68 16 LS Contribution 327.46 15.07 4.93 4.93 Total: -1.00 -31.07 327.46 -8.04 -39.11 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -6.59 Total: 8.68 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: -0.94 Total: -24.88 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.13 Total: -40.29 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -0.48 Total: -8.39 kcal Atomic # 14 Polarization: 25.92 SS G_CDS: -5.08 Total: 20.83 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.07 -8.04 -39.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087367173.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.052 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds