Wall clock time and date at job start Mon Mar 30 2020 05:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46947 * 2 1 4 4 N 1.46499 * 109.46545 * 180.02562 * 3 2 1 5 5 C 1.36935 * 119.99978 * 266.23065 * 4 3 2 6 6 H 1.07998 * 119.99659 * 146.02116 * 5 4 3 7 7 C 1.38810 * 120.00388 * 326.02459 * 5 4 3 8 8 N 1.31629 * 119.99522 * 337.71858 * 7 5 4 9 9 Si 1.86793 * 120.00539 * 157.72411 * 7 5 4 10 10 H 1.48508 * 109.47135 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47736 * 119.99726 * 9 7 5 12 12 H 1.48508 * 109.47081 * 240.00183 * 9 7 5 13 13 C 1.46502 * 120.00067 * 86.24173 * 4 3 2 14 14 H 1.09004 * 108.78941 * 1.43675 * 13 4 3 15 15 C 1.45544 * 108.89609 * 119.99378 * 13 4 3 16 16 C 1.54240 * 112.40484 * 182.69099 * 15 13 4 17 17 C 1.50473 * 108.51682 * 280.01072 * 16 15 13 18 18 C 1.54066 * 112.49627 * 94.15486 * 17 16 15 19 19 C 1.54065 * 112.73470 * 318.33479 * 18 17 16 20 20 C 1.50396 * 112.53560 * 318.12100 * 19 18 17 21 21 H 1.09000 * 109.66377 * 334.61055 * 20 19 18 22 22 O 1.42902 * 109.85230 * 214.06830 * 20 19 18 23 23 H 1.08996 * 109.47163 * 59.99625 * 1 2 3 24 24 H 1.09004 * 109.47000 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46368 * 299.99256 * 1 2 3 26 26 H 1.09008 * 109.46695 * 240.00412 * 2 1 3 27 27 H 1.08996 * 109.47163 * 120.00375 * 2 1 3 28 28 H 1.08991 * 109.46942 * 60.00701 * 3 2 1 29 29 H 1.08998 * 109.46982 * 300.00197 * 3 2 1 30 30 H 0.96996 * 119.99623 * 180.02562 * 8 7 5 31 31 H 1.08997 * 108.89438 * 61.93803 * 15 13 4 32 32 H 1.09000 * 108.89366 * 303.44326 * 15 13 4 33 33 H 1.09007 * 109.62818 * 160.30970 * 16 15 13 34 34 H 1.08993 * 109.79454 * 39.81983 * 16 15 13 35 35 H 1.09000 * 108.87893 * 333.38100 * 17 16 15 36 36 H 1.09001 * 108.80314 * 214.87324 * 17 16 15 37 37 H 1.08998 * 108.81677 * 79.14249 * 18 17 16 38 38 H 1.08997 * 108.81503 * 197.53272 * 18 17 16 39 39 H 1.09000 * 108.87681 * 79.00440 * 19 18 17 40 40 H 1.08995 * 108.88024 * 197.45166 * 19 18 17 41 41 H 0.96696 * 114.00310 * 60.94602 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.5202 1.1824 6 1 5.1318 1.0038 1.2959 7 6 3.6744 2.2627 2.2358 8 7 2.8033 3.2211 2.0009 9 14 4.2167 1.9020 3.9865 10 1 5.1954 0.7850 3.9814 11 1 4.8498 3.1127 4.5681 12 1 3.0355 1.5208 4.8020 13 6 4.2370 1.3594 -1.2669 14 1 3.5188 1.3317 -2.0865 15 6 5.0688 2.5452 -1.4092 16 6 5.8282 2.5731 -2.7514 17 6 7.0353 1.6822 -2.6362 18 6 6.7647 0.2540 -3.1464 19 6 5.3881 -0.2832 -2.7105 20 6 5.0627 0.0568 -1.2821 21 1 5.9854 0.2016 -0.7201 22 8 4.3027 -1.0002 -0.6927 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.6768 1.9563 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 2.4431 3.7401 2.7369 31 1 5.7920 2.5689 -0.5940 32 1 4.4360 3.4303 -1.3431 33 1 6.1452 3.5926 -2.9716 34 1 5.1804 2.2107 -3.5495 35 1 7.3377 1.6316 -1.5902 36 1 7.8489 2.1161 -3.2175 37 1 6.8130 0.2546 -4.2353 38 1 7.5390 -0.4095 -2.7612 39 1 4.6221 0.1422 -3.3588 40 1 5.3807 -1.3673 -2.8234 41 1 4.7630 -1.8502 -0.6697 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088762171.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:56 Heat of formation + Delta-G solvation = -46.942231 kcal Electronic energy + Delta-G solvation = -19273.806008 eV Core-core repulsion = 16574.663614 eV Total energy + Delta-G solvation = -2699.142394 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.98574 -35.46955 -35.12875 -32.43033 -31.74493 -30.49723 -28.71584 -25.41484 -24.26847 -23.71748 -21.98339 -20.02463 -19.53091 -19.07272 -16.60426 -16.15854 -15.24825 -14.69371 -14.22677 -14.06051 -13.85100 -13.42765 -13.13641 -12.77841 -12.58592 -12.42696 -12.02501 -11.85627 -11.23219 -11.09590 -10.96918 -10.73661 -10.63267 -10.54391 -10.32685 -10.19038 -10.10748 -9.96542 -9.84629 -9.68893 -9.35803 -9.19285 -8.98526 -8.29761 -6.39150 -5.61509 -3.12365 3.43348 3.52144 3.54821 4.58933 4.86990 5.04010 5.14652 5.33789 5.43473 5.53928 5.61617 5.66534 5.86237 5.92156 6.00857 6.03447 6.07270 6.12472 6.23528 6.31871 6.41745 6.46346 6.54244 6.56729 6.63054 6.75324 6.79432 6.84120 6.96050 7.08545 7.19661 7.21583 7.40738 7.57136 7.94329 8.02470 8.48616 8.68067 9.36511 10.01370 10.59210 11.38121 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019796 B = 0.009833 C = 0.008085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.090237 B = 2846.825333 C = 3462.352534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.148 3.852 4 N -0.571 5.571 5 C -0.228 4.228 6 H 0.055 0.945 7 C 0.002 3.998 8 N -0.892 5.892 9 Si 0.890 3.110 10 H -0.279 1.279 11 H -0.293 1.293 12 H -0.291 1.291 13 C 0.189 3.811 14 H 0.044 0.956 15 C -0.118 4.118 16 C -0.119 4.119 17 C -0.119 4.119 18 C -0.111 4.111 19 C -0.148 4.148 20 C 0.097 3.903 21 H 0.045 0.955 22 O -0.536 6.536 23 H 0.041 0.959 24 H 0.036 0.964 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.097 0.903 29 H 0.011 0.989 30 H 0.250 0.750 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.218 -5.128 -9.079 11.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C 0.022 3.978 4 N -0.289 5.289 5 C -0.358 4.358 6 H 0.073 0.927 7 C -0.197 4.197 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.221 1.221 12 H -0.217 1.217 13 C 0.081 3.919 14 H 0.062 0.938 15 C -0.157 4.157 16 C -0.158 4.158 17 C -0.156 4.156 18 C -0.149 4.149 19 C -0.186 4.186 20 C 0.036 3.964 21 H 0.063 0.937 22 O -0.338 6.338 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.114 0.886 29 H 0.030 0.970 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 3.683 -4.507 -8.892 10.628 hybrid contribution 0.707 -0.690 0.856 1.307 sum 4.391 -5.197 -8.037 10.530 Atomic orbital electron populations 1.21749 0.98515 0.99520 1.00649 1.22031 0.92308 1.01570 1.01238 1.20983 0.83400 0.92311 1.01062 1.43745 1.00656 1.84286 1.00262 1.18907 1.05154 1.22280 0.89493 0.92715 1.24997 1.00326 0.95670 0.98690 1.70003 1.33859 1.19734 1.30072 0.86412 0.77933 0.77576 0.85997 1.20389 1.22069 1.21737 1.19145 0.92649 0.90069 0.90019 0.93768 1.20865 0.99850 0.99623 0.95313 1.21383 0.96926 0.98550 0.98914 1.21368 0.98041 0.94674 1.01566 1.21832 0.96779 0.96411 0.99840 1.22145 0.97130 1.00074 0.99296 1.21987 0.94674 0.89998 0.89727 0.93674 1.86803 1.44367 1.19190 1.83408 0.94006 0.94504 0.93452 0.93371 0.92763 0.88591 0.97030 0.93983 0.91357 0.91754 0.92645 0.92389 0.91815 0.93095 0.92819 0.92856 0.91982 0.92646 0.80587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.91 37.16 0.37 -2.32 16 2 C -0.13 -2.86 5.59 -26.73 -0.15 -3.01 16 3 C 0.15 3.64 5.20 -4.04 -0.02 3.62 16 4 N -0.57 -14.12 1.76 -168.96 -0.30 -14.41 16 5 C -0.23 -6.18 8.05 -15.06 -0.12 -6.30 16 6 H 0.06 1.51 7.51 -52.49 -0.39 1.12 16 7 C 0.00 0.04 4.93 -17.43 -0.09 -0.04 16 8 N -0.89 -25.89 11.32 55.49 0.63 -25.27 16 9 Si 0.89 22.11 29.61 -169.99 -5.03 17.08 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 13 C 0.19 3.93 1.98 -70.80 -0.14 3.79 16 14 H 0.04 0.92 7.12 -51.93 -0.37 0.55 16 15 C -0.12 -2.31 4.44 -29.60 -0.13 -2.44 16 16 C -0.12 -1.81 5.60 -27.34 -0.15 -1.97 16 17 C -0.12 -1.64 5.31 -27.44 -0.15 -1.78 16 18 C -0.11 -1.41 5.86 -25.62 -0.15 -1.56 16 19 C -0.15 -2.15 5.06 -27.47 -0.14 -2.29 16 20 C 0.10 1.77 2.30 -27.38 -0.06 1.70 16 21 H 0.05 0.87 6.79 -51.93 -0.35 0.51 16 22 O -0.54 -10.18 11.01 -35.23 -0.39 -10.57 16 23 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.05 1.04 7.26 -51.92 -0.38 0.66 16 27 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.10 2.66 5.32 -51.93 -0.28 2.38 16 29 H 0.01 0.27 7.97 -51.93 -0.41 -0.14 16 30 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.07 1.47 6.84 -51.93 -0.36 1.11 16 32 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 33 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 34 H 0.06 0.85 6.99 -51.93 -0.36 0.48 16 35 H 0.06 0.96 6.63 -51.93 -0.34 0.62 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.93 6.63 -51.93 -0.34 0.59 16 40 H 0.05 0.73 7.87 -51.93 -0.41 0.32 16 41 H 0.35 5.08 8.96 45.56 0.41 5.49 16 LS Contribution 306.73 15.07 4.62 4.62 Total: -1.00 -29.35 306.73 -7.93 -37.27 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -6.53 Total: 3.88 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -0.93 Total: -12.61 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.33 Total: -39.68 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: -0.39 Total: -10.57 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.35 -7.93 -37.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088762171.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.668 kcal (2) G-P(sol) polarization free energy of solvation -29.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds