Wall clock time and date at job start Mon Mar 30 2020 05:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46947 * 2 1 4 4 N 1.46499 * 109.46545 * 180.02562 * 3 2 1 5 5 C 1.36935 * 119.99978 * 266.23065 * 4 3 2 6 6 H 1.07998 * 119.99659 * 146.02116 * 5 4 3 7 7 C 1.38810 * 120.00388 * 326.02459 * 5 4 3 8 8 N 1.31629 * 119.99522 * 337.71858 * 7 5 4 9 9 Si 1.86793 * 120.00539 * 157.72411 * 7 5 4 10 10 H 1.48508 * 109.47135 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47736 * 119.99726 * 9 7 5 12 12 H 1.48508 * 109.47081 * 240.00183 * 9 7 5 13 13 C 1.46502 * 120.00067 * 86.24173 * 4 3 2 14 14 H 1.09004 * 108.78941 * 1.43675 * 13 4 3 15 15 C 1.45544 * 108.89609 * 119.99378 * 13 4 3 16 16 C 1.54240 * 112.40484 * 182.69099 * 15 13 4 17 17 C 1.50473 * 108.51682 * 280.01072 * 16 15 13 18 18 C 1.54066 * 112.49627 * 94.15486 * 17 16 15 19 19 C 1.54065 * 112.73470 * 318.33479 * 18 17 16 20 20 C 1.50396 * 112.53560 * 318.12100 * 19 18 17 21 21 H 1.09000 * 109.66377 * 334.61055 * 20 19 18 22 22 O 1.42902 * 109.85230 * 214.06830 * 20 19 18 23 23 H 1.08996 * 109.47163 * 59.99625 * 1 2 3 24 24 H 1.09004 * 109.47000 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46368 * 299.99256 * 1 2 3 26 26 H 1.09008 * 109.46695 * 240.00412 * 2 1 3 27 27 H 1.08996 * 109.47163 * 120.00375 * 2 1 3 28 28 H 1.08991 * 109.46942 * 60.00701 * 3 2 1 29 29 H 1.08998 * 109.46982 * 300.00197 * 3 2 1 30 30 H 0.96996 * 119.99623 * 180.02562 * 8 7 5 31 31 H 1.08997 * 108.89438 * 61.93803 * 15 13 4 32 32 H 1.09000 * 108.89366 * 303.44326 * 15 13 4 33 33 H 1.09007 * 109.62818 * 160.30970 * 16 15 13 34 34 H 1.08993 * 109.79454 * 39.81983 * 16 15 13 35 35 H 1.09000 * 108.87893 * 333.38100 * 17 16 15 36 36 H 1.09001 * 108.80314 * 214.87324 * 17 16 15 37 37 H 1.08998 * 108.81677 * 79.14249 * 18 17 16 38 38 H 1.08997 * 108.81503 * 197.53272 * 18 17 16 39 39 H 1.09000 * 108.87681 * 79.00440 * 19 18 17 40 40 H 1.08995 * 108.88024 * 197.45166 * 19 18 17 41 41 H 0.96696 * 114.00310 * 60.94602 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.5202 1.1824 6 1 5.1318 1.0038 1.2959 7 6 3.6744 2.2627 2.2358 8 7 2.8033 3.2211 2.0009 9 14 4.2167 1.9020 3.9865 10 1 5.1954 0.7850 3.9814 11 1 4.8498 3.1127 4.5681 12 1 3.0355 1.5208 4.8020 13 6 4.2370 1.3594 -1.2669 14 1 3.5188 1.3317 -2.0865 15 6 5.0688 2.5452 -1.4092 16 6 5.8282 2.5731 -2.7514 17 6 7.0353 1.6822 -2.6362 18 6 6.7647 0.2540 -3.1464 19 6 5.3881 -0.2832 -2.7105 20 6 5.0627 0.0568 -1.2821 21 1 5.9854 0.2016 -0.7201 22 8 4.3027 -1.0002 -0.6927 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.6768 1.9563 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 2.4431 3.7401 2.7369 31 1 5.7920 2.5689 -0.5940 32 1 4.4360 3.4303 -1.3431 33 1 6.1452 3.5926 -2.9716 34 1 5.1804 2.2107 -3.5495 35 1 7.3377 1.6316 -1.5902 36 1 7.8489 2.1161 -3.2175 37 1 6.8130 0.2546 -4.2353 38 1 7.5390 -0.4095 -2.7612 39 1 4.6221 0.1422 -3.3588 40 1 5.3807 -1.3673 -2.8234 41 1 4.7630 -1.8502 -0.6697 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088762171.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:54 Heat of formation + Delta-G solvation = -64.647288 kcal Electronic energy + Delta-G solvation = -19274.573756 eV Core-core repulsion = 16574.663614 eV Total energy + Delta-G solvation = -2699.910142 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.46898 -37.23229 -36.54023 -34.13059 -33.56956 -31.90713 -30.36338 -27.35879 -25.80110 -25.07090 -23.63520 -21.76162 -21.29883 -20.26906 -18.35335 -17.79344 -17.07239 -16.22633 -15.99424 -15.66335 -15.28529 -14.88080 -14.77304 -14.33891 -14.01612 -13.93464 -13.54188 -13.26592 -13.12379 -12.87409 -12.70625 -12.53199 -12.22477 -12.02213 -11.90323 -11.78277 -11.69725 -11.45040 -11.32500 -11.26124 -11.15123 -10.90432 -10.43232 -10.38190 -8.43527 -7.70848 -5.25162 1.42695 1.46571 1.55484 2.55240 3.31922 3.51380 3.58034 3.99053 4.14617 4.18194 4.35659 4.37182 4.42275 4.47222 4.52823 4.53475 4.68350 4.76027 4.86975 4.94551 5.00258 5.06923 5.17958 5.21089 5.28551 5.33464 5.34528 5.40166 5.43025 5.45819 5.56382 5.60563 5.67247 5.74688 5.79681 6.02769 6.57198 7.22067 7.27912 8.01220 8.53058 9.24792 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019796 B = 0.009833 C = 0.008085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.090237 B = 2846.825333 C = 3462.352534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.115 4.115 3 C 0.148 3.852 4 N -0.585 5.585 5 C -0.221 4.221 6 H 0.047 0.953 7 C -0.050 4.050 8 N -0.922 5.922 9 Si 0.946 3.054 10 H -0.272 1.272 11 H -0.294 1.294 12 H -0.294 1.294 13 C 0.182 3.818 14 H 0.042 0.958 15 C -0.108 4.108 16 C -0.108 4.108 17 C -0.119 4.119 18 C -0.107 4.107 19 C -0.141 4.141 20 C 0.108 3.892 21 H 0.031 0.969 22 O -0.560 6.560 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.039 0.961 26 H 0.051 0.949 27 H 0.029 0.971 28 H 0.065 0.935 29 H 0.009 0.991 30 H 0.246 0.754 31 H 0.042 0.958 32 H 0.030 0.970 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.044 0.956 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.147 -6.650 -10.775 13.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.154 4.154 3 C 0.022 3.978 4 N -0.304 5.304 5 C -0.352 4.352 6 H 0.064 0.936 7 C -0.245 4.245 8 N -0.569 5.569 9 Si 0.776 3.224 10 H -0.197 1.197 11 H -0.221 1.221 12 H -0.221 1.221 13 C 0.076 3.924 14 H 0.061 0.939 15 C -0.148 4.148 16 C -0.146 4.146 17 C -0.156 4.156 18 C -0.144 4.144 19 C -0.179 4.179 20 C 0.047 3.953 21 H 0.049 0.951 22 O -0.365 6.365 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.082 0.918 29 H 0.028 0.972 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 4.638 -6.057 -10.611 13.069 hybrid contribution 0.417 -0.223 1.336 1.417 sum 5.054 -6.281 -9.275 12.289 Atomic orbital electron populations 1.21679 0.95785 1.01306 1.00967 1.21789 0.94624 0.98961 1.00071 1.20893 0.83716 0.93852 0.99352 1.43946 1.00904 1.84467 1.01109 1.18982 1.04628 1.20977 0.90609 0.93572 1.25601 1.01223 0.95986 1.01686 1.70127 1.35418 1.20863 1.30494 0.85530 0.77363 0.77327 0.82220 1.19685 1.22104 1.22126 1.19410 0.92837 0.92097 0.88066 0.93928 1.20738 0.98816 0.97744 0.97453 1.21300 0.97251 1.00043 0.96038 1.21351 0.97837 0.95429 1.01027 1.21824 0.95760 0.95545 1.01288 1.22023 0.98275 1.01525 0.96108 1.21737 0.92927 0.88504 0.92127 0.95063 1.86732 1.45385 1.20470 1.83875 0.92643 0.91938 0.94220 0.92983 0.95214 0.91756 0.97232 0.94485 0.93952 0.95130 0.91454 0.91187 0.93730 0.90522 0.90414 0.91588 0.92253 0.90608 0.78218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.94 9.91 71.98 0.71 -4.23 16 2 C -0.11 -4.96 5.59 30.60 0.17 -4.79 16 3 C 0.15 7.43 5.20 86.38 0.45 7.88 16 4 N -0.58 -29.64 1.76 -688.48 -1.21 -30.84 16 5 C -0.22 -12.29 8.05 84.03 0.68 -11.61 16 6 H 0.05 2.62 7.51 -2.91 -0.02 2.60 16 7 C -0.05 -2.84 4.93 84.86 0.42 -2.42 16 8 N -0.92 -55.47 11.32 21.65 0.25 -55.23 16 9 Si 0.95 46.54 29.61 68.60 2.03 48.57 16 10 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 12 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 13 C 0.18 7.62 1.98 43.13 0.09 7.71 16 14 H 0.04 1.77 7.12 -2.38 -0.02 1.76 16 15 C -0.11 -4.34 4.44 28.74 0.13 -4.22 16 16 C -0.11 -3.11 5.60 30.20 0.17 -2.94 16 17 C -0.12 -2.96 5.31 30.14 0.16 -2.80 16 18 C -0.11 -2.31 5.86 31.31 0.18 -2.13 16 19 C -0.14 -3.68 5.06 30.11 0.15 -3.52 16 20 C 0.11 3.80 2.30 30.17 0.07 3.87 16 21 H 0.03 1.19 6.79 -2.39 -0.02 1.17 16 22 O -0.56 -20.62 11.01 -148.98 -1.64 -22.26 16 23 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.06 1.89 8.14 -2.38 -0.02 1.88 16 25 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.05 2.19 7.26 -2.38 -0.02 2.17 16 27 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.06 3.70 5.32 -2.39 -0.01 3.69 16 29 H 0.01 0.46 7.97 -2.39 -0.02 0.44 16 30 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 31 H 0.04 1.88 6.84 -2.39 -0.02 1.87 16 32 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.07 1.87 6.99 -2.39 -0.02 1.85 16 35 H 0.04 1.28 6.63 -2.39 -0.02 1.27 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.06 1.60 6.63 -2.39 -0.02 1.58 16 40 H 0.08 1.70 7.87 -2.39 -0.02 1.68 16 41 H 0.37 10.05 8.96 -74.06 -0.66 9.39 16 Total: -1.00 -64.95 306.73 3.13 -61.83 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.32 Total: 17.13 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: 3.38 Total: -19.19 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -0.96 Total: -86.07 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -1.64 Total: -22.26 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -64.95 3.13 -61.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088762171.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.822 kcal (2) G-P(sol) polarization free energy of solvation -64.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds