Wall clock time and date at job start Mon Mar 30 2020 05:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46718 * 2 1 4 4 N 1.46491 * 109.47232 * 120.00220 * 2 1 3 5 5 C 1.36936 * 119.99985 * 119.19107 * 4 2 1 6 6 H 1.07996 * 120.00515 * 146.01030 * 5 4 2 7 7 C 1.38816 * 119.99931 * 326.00693 * 5 4 2 8 8 N 1.31620 * 120.00210 * 348.06614 * 7 5 4 9 9 Si 1.86797 * 120.00040 * 168.05903 * 7 5 4 10 10 H 1.48502 * 109.47224 * 60.00433 * 9 7 5 11 11 H 1.48504 * 109.47260 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47635 * 300.00185 * 9 7 5 13 13 C 1.46497 * 120.00299 * 299.18709 * 4 2 1 14 14 H 1.09002 * 108.69045 * 359.51054 * 13 4 2 15 15 C 1.54074 * 108.81594 * 241.15351 * 13 4 2 16 16 C 1.50553 * 112.41447 * 197.41706 * 15 13 4 17 17 C 1.54241 * 108.48078 * 94.26773 * 16 15 13 18 18 C 1.45544 * 112.32674 * 279.87872 * 17 16 15 19 19 C 1.54241 * 112.40469 * 61.98861 * 18 17 16 20 20 C 1.50475 * 108.51808 * 280.00508 * 19 18 17 21 21 H 1.09001 * 108.87867 * 333.37641 * 20 19 18 22 22 O 1.42905 * 108.87373 * 214.83178 * 20 19 18 23 23 H 1.08993 * 109.47357 * 299.99610 * 1 2 3 24 24 H 1.09002 * 109.47463 * 59.99715 * 1 2 3 25 25 H 1.09008 * 109.46645 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47049 * 240.00573 * 2 1 3 27 27 H 1.08998 * 109.46977 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47387 * 300.00332 * 3 2 1 29 29 H 1.09000 * 109.46893 * 60.00477 * 3 2 1 30 30 H 0.96992 * 120.00616 * 179.97438 * 8 7 5 31 31 H 1.09000 * 108.87411 * 318.20395 * 15 13 4 32 32 H 1.09007 * 108.87183 * 76.64597 * 15 13 4 33 33 H 1.09001 * 109.72008 * 334.52886 * 16 15 13 34 34 H 1.08996 * 109.57512 * 213.92699 * 16 15 13 35 35 H 1.09007 * 108.88956 * 159.17798 * 17 16 15 36 36 H 1.08993 * 108.89383 * 40.58800 * 17 16 15 37 37 H 1.08999 * 108.88875 * 182.73966 * 18 17 16 38 38 H 1.08997 * 108.89500 * 301.22902 * 18 17 16 39 39 H 1.08994 * 109.62825 * 39.71199 * 19 18 17 40 40 H 1.08992 * 109.62438 * 160.29330 * 19 18 17 41 41 H 0.96706 * 113.99738 * 60.00284 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.7919 -1.8135 1.0704 6 1 3.5728 -2.0145 1.7888 7 6 2.5721 -2.6937 0.0197 8 7 1.4855 -2.5836 -0.7148 9 14 3.8187 -4.0344 -0.3519 10 1 3.9627 -4.9185 0.8325 11 1 3.3540 -4.8342 -1.5136 12 1 5.1307 -3.4160 -0.6704 13 6 1.6792 -0.1799 2.5266 14 1 1.0702 0.7168 2.4118 15 6 2.9805 0.1940 3.2619 16 6 2.7823 0.3264 4.7484 17 6 3.1352 -1.0212 5.4106 18 6 2.0523 -1.9881 5.3079 19 6 1.7167 -2.3417 3.8446 20 6 0.8565 -1.2470 3.2736 21 1 0.3111 -0.7669 4.0861 22 8 -0.0829 -1.8239 2.3644 23 1 -0.3634 0.5137 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 3.1299 1.4426 0.0005 28 1 1.6765 1.9565 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.3321 -3.1983 -1.4492 31 1 3.7269 -0.5773 3.0720 32 1 3.3478 1.1420 2.8685 33 1 1.7428 0.5772 4.9599 34 1 3.4364 1.1073 5.1360 35 1 3.3564 -0.8495 6.4641 36 1 4.0215 -1.4310 4.9264 37 1 2.3408 -2.8983 5.8337 38 1 1.1633 -1.5744 5.7840 39 1 2.6375 -2.4227 3.2670 40 1 1.1758 -3.2874 3.8113 41 1 -0.6721 -2.4757 2.7686 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088762269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:59 Heat of formation + Delta-G solvation = -53.312723 kcal Electronic energy + Delta-G solvation = -19838.413010 eV Core-core repulsion = 17138.994371 eV Total energy + Delta-G solvation = -2699.418639 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.42196 -37.40367 -36.50004 -33.68278 -33.06861 -31.70690 -29.66909 -27.56390 -26.42241 -24.74995 -24.20565 -21.67482 -20.85761 -20.00445 -18.24290 -17.71316 -16.64588 -16.41277 -15.97187 -15.45772 -15.14203 -14.47126 -14.35451 -14.11358 -13.83529 -13.70517 -13.51458 -13.33437 -12.91590 -12.78143 -12.66297 -12.56733 -12.25740 -12.09082 -11.90689 -11.71491 -11.59526 -11.31343 -11.18717 -11.06750 -10.92620 -10.67712 -10.26196 -10.20296 -8.22733 -7.58936 -5.07126 1.48464 1.50822 1.54584 2.62798 3.53838 3.61505 3.73168 4.05098 4.08896 4.28216 4.44807 4.46477 4.57450 4.59487 4.67960 4.73459 4.81521 4.90224 4.98200 5.06950 5.14989 5.19391 5.22955 5.25477 5.33748 5.39111 5.41577 5.45176 5.49474 5.53491 5.61124 5.68397 5.83359 5.93527 5.99501 6.24433 6.69184 7.32711 7.46344 8.17187 8.68378 9.43864 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019356 B = 0.012078 C = 0.009727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.259157 B = 2317.671256 C = 2877.806931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.180 3.820 3 C -0.151 4.151 4 N -0.572 5.572 5 C -0.225 4.225 6 H 0.056 0.944 7 C -0.036 4.036 8 N -0.907 5.907 9 Si 0.936 3.064 10 H -0.284 1.284 11 H -0.303 1.303 12 H -0.286 1.286 13 C 0.179 3.821 14 H 0.043 0.957 15 C -0.118 4.118 16 C -0.109 4.109 17 C -0.114 4.114 18 C -0.109 4.109 19 C -0.144 4.144 20 C 0.110 3.890 21 H 0.039 0.961 22 O -0.554 6.554 23 H 0.025 0.975 24 H 0.026 0.974 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.038 0.962 28 H 0.052 0.948 29 H 0.046 0.954 30 H 0.237 0.763 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.046 0.954 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.046 0.954 41 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.053 5.049 10.953 12.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.073 3.927 3 C -0.210 4.210 4 N -0.292 5.292 5 C -0.356 4.356 6 H 0.073 0.927 7 C -0.232 4.232 8 N -0.553 5.553 9 Si 0.767 3.233 10 H -0.210 1.210 11 H -0.229 1.229 12 H -0.213 1.213 13 C 0.072 3.928 14 H 0.061 0.939 15 C -0.158 4.158 16 C -0.147 4.147 17 C -0.151 4.151 18 C -0.147 4.147 19 C -0.181 4.181 20 C 0.050 3.950 21 H 0.057 0.943 22 O -0.357 6.357 23 H 0.044 0.956 24 H 0.045 0.955 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 0.311 5.360 10.375 11.681 hybrid contribution 0.217 -1.524 -0.333 1.575 sum 0.528 3.836 10.042 10.763 Atomic orbital electron populations 1.21817 0.98103 1.00580 0.96945 1.20150 0.92067 0.89522 0.90942 1.22259 1.00001 0.98352 1.00349 1.43801 1.58320 1.27881 0.99213 1.18903 1.08136 0.98607 1.09981 0.92703 1.25584 0.97211 0.98837 1.01577 1.70153 1.25475 1.38473 1.21150 0.85849 0.79918 0.80786 0.76745 1.21026 1.22943 1.21323 1.20890 0.92772 0.93207 0.85947 0.93857 1.21681 0.98293 1.00322 0.95465 1.21333 1.01906 0.97387 0.94099 1.20467 0.98326 0.95310 1.01010 1.20425 0.99515 0.99367 0.95383 1.22116 1.02025 0.97638 0.96347 1.21936 0.89494 0.93792 0.89781 0.94335 1.86891 1.49663 1.60017 1.39146 0.95572 0.95489 0.93353 0.92533 0.94289 0.92871 0.93485 0.95357 0.93260 0.93229 0.91617 0.90702 0.90601 0.93512 0.92040 0.91636 0.91554 0.93553 0.79519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.33 8.11 71.98 0.58 -4.75 16 2 C 0.18 8.56 2.30 44.99 0.10 8.66 16 3 C -0.15 -5.93 9.17 71.98 0.66 -5.27 16 4 N -0.57 -27.13 1.69 -650.30 -1.10 -28.23 16 5 C -0.23 -11.76 7.11 84.03 0.60 -11.17 16 6 H 0.06 2.89 5.31 -2.91 -0.02 2.87 16 7 C -0.04 -1.96 4.99 84.86 0.42 -1.54 16 8 N -0.91 -52.49 10.26 21.65 0.22 -52.27 16 9 Si 0.94 45.35 29.57 68.60 2.03 47.38 16 10 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 11 H -0.30 -15.01 7.11 99.48 0.71 -14.31 16 12 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 13 C 0.18 7.11 1.75 45.71 0.08 7.19 16 14 H 0.04 1.73 5.96 -2.39 -0.01 1.72 16 15 C -0.12 -4.06 4.84 30.16 0.15 -3.91 16 16 C -0.11 -2.86 5.61 30.22 0.17 -2.69 16 17 C -0.11 -2.86 5.27 28.74 0.15 -2.71 16 18 C -0.11 -2.92 5.26 28.74 0.15 -2.77 16 19 C -0.14 -5.10 4.97 30.20 0.15 -4.95 16 20 C 0.11 4.10 2.54 30.14 0.08 4.18 16 21 H 0.04 1.27 6.63 -2.39 -0.02 1.25 16 22 O -0.55 -23.68 10.95 -148.98 -1.63 -25.31 16 23 H 0.03 1.12 7.09 -2.39 -0.02 1.10 16 24 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.05 2.56 6.70 -2.38 -0.02 2.54 16 26 H 0.06 3.14 5.95 -2.39 -0.01 3.13 16 27 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.05 1.71 6.97 -2.39 -0.02 1.69 16 30 H 0.24 13.74 8.31 -92.71 -0.77 12.97 16 31 H 0.05 1.91 4.98 -2.39 -0.01 1.90 16 32 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.07 1.65 6.97 -2.39 -0.02 1.63 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.05 1.31 7.46 -2.39 -0.02 1.29 16 37 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.07 1.57 7.47 -2.39 -0.02 1.55 16 39 H 0.07 2.81 4.20 -2.39 -0.01 2.80 16 40 H 0.05 1.67 7.85 -2.39 -0.02 1.66 16 41 H 0.36 12.59 8.92 -74.05 -0.66 11.93 16 Total: -1.00 -60.57 293.46 3.16 -57.41 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.35 Total: 20.76 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: 3.29 Total: -19.73 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -0.88 Total: -80.50 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -1.63 Total: -25.31 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -60.57 3.16 -57.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088762269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.093 kcal (2) G-P(sol) polarization free energy of solvation -60.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds