Wall clock time and date at job start Mon Mar 30 2020 05:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47252 * 2 1 4 4 N 1.46504 * 109.47059 * 119.99461 * 2 1 3 5 5 C 1.36942 * 119.99664 * 117.17921 * 4 2 1 6 6 H 1.08002 * 119.99648 * 151.27642 * 5 4 2 7 7 C 1.38809 * 119.99979 * 331.27449 * 5 4 2 8 8 N 1.31617 * 120.00237 * 341.61689 * 7 5 4 9 9 Si 1.86808 * 119.99800 * 161.61678 * 7 5 4 10 10 H 1.48503 * 109.47077 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47029 * 119.99821 * 9 7 5 12 12 H 1.48498 * 109.46992 * 240.00395 * 9 7 5 13 13 C 1.46500 * 120.00443 * 297.18502 * 4 2 1 14 14 H 1.09001 * 108.78367 * 1.43819 * 13 4 2 15 15 C 1.45535 * 108.89782 * 119.99577 * 13 4 2 16 16 C 1.54245 * 112.40869 * 182.69172 * 15 13 4 17 17 C 1.50476 * 108.67984 * 279.91703 * 16 15 13 18 18 C 1.54261 * 112.38598 * 93.93393 * 17 16 15 19 19 C 1.54065 * 112.95270 * 318.57201 * 18 17 16 20 20 C 1.50476 * 112.49590 * 318.17651 * 19 18 17 21 21 H 1.08998 * 109.63152 * 334.43841 * 20 19 18 22 22 O 1.42897 * 109.62735 * 213.85825 * 20 19 18 23 23 H 1.08999 * 109.47545 * 300.00284 * 1 2 3 24 24 H 1.08997 * 109.47169 * 60.00381 * 1 2 3 25 25 H 1.09007 * 109.47391 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47260 * 239.99343 * 2 1 3 27 27 H 1.09002 * 109.47393 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.47233 * 299.99865 * 3 2 1 29 29 H 1.08999 * 109.47078 * 59.99430 * 3 2 1 30 30 H 0.97002 * 119.99949 * 179.97438 * 8 7 5 31 31 H 1.09000 * 108.89541 * 61.93688 * 15 13 4 32 32 H 1.09004 * 108.82167 * 303.39143 * 15 13 4 33 33 H 1.09003 * 109.62492 * 39.71675 * 16 15 13 34 34 H 1.08996 * 109.63023 * 160.10309 * 16 15 13 35 35 H 1.08995 * 108.87044 * 215.02120 * 17 16 15 36 36 H 1.08991 * 108.87530 * 333.46599 * 17 16 15 37 37 H 1.09001 * 108.82819 * 197.61541 * 18 17 16 38 38 H 1.08999 * 108.65878 * 79.41544 * 18 17 16 39 39 H 1.09000 * 108.87840 * 197.40101 * 19 18 17 40 40 H 1.08996 * 108.79373 * 78.89645 * 19 18 17 41 41 H 0.96691 * 114.00224 * 60.96494 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.7572 -1.8367 1.0715 6 1 3.4858 -2.0942 1.8260 7 6 2.5698 -2.6674 -0.0247 8 7 1.4710 -2.5716 -0.7428 9 14 3.8773 -3.9213 -0.4806 10 1 5.0074 -3.8291 0.4783 11 1 3.2941 -5.2860 -0.4278 12 1 4.3694 -3.6460 -1.8544 13 6 1.7160 -0.1550 2.5260 14 1 1.1019 0.7384 2.4132 15 6 0.9656 -1.1513 3.2759 16 6 0.5459 -0.6440 4.6708 17 6 1.7218 -0.7657 5.6018 18 6 2.5424 0.5378 5.6853 19 6 2.7313 1.2176 4.3157 20 6 3.0376 0.2317 3.2209 21 1 3.5004 -0.6579 3.6482 22 8 3.9227 0.8287 2.2711 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.3403 -3.1519 -1.5090 31 1 1.5826 -2.0419 3.3951 32 1 0.0707 -1.4152 2.7124 33 1 0.2386 0.3996 4.6037 34 1 -0.2818 -1.2461 5.0456 35 1 1.3587 -1.0247 6.5964 36 1 2.3716 -1.5653 5.2464 37 1 3.5232 0.3100 6.1029 38 1 2.0304 1.2300 6.3537 39 1 3.5516 1.9319 4.3866 40 1 1.8176 1.7546 4.0612 41 1 4.7746 1.0965 2.6417 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088762271.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:03 Heat of formation + Delta-G solvation = -40.469137 kcal Electronic energy + Delta-G solvation = -19606.477309 eV Core-core repulsion = 16907.615610 eV Total energy + Delta-G solvation = -2698.861699 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.06092 -35.75692 -35.12676 -31.80935 -31.64593 -30.34056 -28.15855 -25.79365 -24.34593 -23.70032 -22.83182 -19.97477 -19.10477 -18.97685 -16.64547 -16.17262 -14.98773 -14.69532 -14.28755 -14.06431 -13.62873 -13.42646 -12.81526 -12.63974 -12.32571 -12.23902 -11.97000 -11.69632 -11.36840 -11.06635 -10.84901 -10.72314 -10.69472 -10.58760 -10.27501 -10.18273 -10.13542 -9.98111 -9.74137 -9.67221 -9.27413 -9.16046 -8.93052 -8.22895 -6.43730 -5.62884 -3.02463 3.44900 3.53409 3.55144 4.60332 4.87366 5.03071 5.14286 5.33873 5.46777 5.54044 5.61807 5.66230 5.86099 5.90835 6.01045 6.04317 6.22160 6.29870 6.39933 6.49177 6.50588 6.54810 6.56863 6.73036 6.73798 6.79205 6.87038 6.94559 6.97789 7.08839 7.17854 7.32598 7.42018 7.85240 7.90853 8.04609 8.49332 8.66189 9.41345 10.05512 10.60270 11.44138 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022327 B = 0.009785 C = 0.008909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.780749 B = 2860.851434 C = 3141.968078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.184 3.816 3 C -0.153 4.153 4 N -0.569 5.569 5 C -0.227 4.227 6 H 0.058 0.942 7 C -0.001 4.001 8 N -0.899 5.899 9 Si 0.893 3.107 10 H -0.281 1.281 11 H -0.294 1.294 12 H -0.292 1.292 13 C 0.190 3.810 14 H 0.049 0.951 15 C -0.119 4.119 16 C -0.120 4.120 17 C -0.119 4.119 18 C -0.111 4.111 19 C -0.148 4.148 20 C 0.097 3.903 21 H 0.044 0.956 22 O -0.536 6.536 23 H 0.019 0.981 24 H 0.024 0.976 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.053 0.947 28 H 0.027 0.973 29 H 0.032 0.968 30 H 0.249 0.751 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.488 6.378 9.588 11.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.078 3.922 3 C -0.212 4.212 4 N -0.288 5.288 5 C -0.357 4.357 6 H 0.076 0.924 7 C -0.199 4.199 8 N -0.544 5.544 9 Si 0.724 3.276 10 H -0.206 1.206 11 H -0.222 1.222 12 H -0.219 1.219 13 C 0.082 3.918 14 H 0.067 0.933 15 C -0.158 4.158 16 C -0.158 4.158 17 C -0.156 4.156 18 C -0.149 4.149 19 C -0.186 4.186 20 C 0.036 3.964 21 H 0.062 0.938 22 O -0.338 6.338 23 H 0.038 0.962 24 H 0.044 0.956 25 H 0.089 0.911 26 H 0.113 0.887 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -0.072 6.157 9.015 10.917 hybrid contribution 1.124 -0.557 0.191 1.269 sum 1.052 5.600 9.206 10.826 Atomic orbital electron populations 1.22156 0.99386 1.01761 0.97015 1.20212 0.90951 0.88926 0.92110 1.22310 1.01414 0.99417 0.98090 1.43843 1.61128 1.25720 0.98110 1.18997 1.11906 0.97493 1.07296 0.92439 1.24924 0.96479 0.97643 1.00855 1.70038 1.23602 1.40483 1.20273 0.86365 0.81964 0.81162 0.78118 1.20595 1.22181 1.21891 1.19035 0.90660 0.94990 0.87093 0.93307 1.20903 1.00918 1.00281 0.93661 1.21384 0.97029 1.00955 0.96441 1.21389 0.97486 0.97681 0.99063 1.21863 0.99434 0.96901 0.96691 1.22164 1.01897 0.99169 0.95420 1.22025 0.93552 0.92866 0.87964 0.93753 1.86798 1.27618 1.81830 1.37506 0.96217 0.95646 0.91050 0.88732 0.92741 0.95426 0.94883 0.94111 0.91497 0.91770 0.92396 0.92669 0.93033 0.91890 0.92871 0.92865 0.92595 0.92020 0.80606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.05 37.15 0.34 -2.93 16 2 C 0.18 4.45 2.32 -67.93 -0.16 4.29 16 3 C -0.15 -3.27 8.38 37.16 0.31 -2.96 16 4 N -0.57 -13.79 1.69 -161.42 -0.27 -14.06 16 5 C -0.23 -6.08 8.14 -15.06 -0.12 -6.20 16 6 H 0.06 1.57 7.46 -52.49 -0.39 1.18 16 7 C 0.00 -0.04 4.85 -17.43 -0.08 -0.12 16 8 N -0.90 -25.56 10.28 55.49 0.57 -24.99 16 9 Si 0.89 22.05 29.59 -169.99 -5.03 17.02 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 13 C 0.19 3.88 1.09 -70.80 -0.08 3.80 16 14 H 0.05 1.01 5.30 -51.93 -0.28 0.74 16 15 C -0.12 -2.29 4.44 -29.60 -0.13 -2.42 16 16 C -0.12 -1.80 5.59 -27.34 -0.15 -1.96 16 17 C -0.12 -1.62 5.34 -27.33 -0.15 -1.76 16 18 C -0.11 -1.41 5.85 -25.52 -0.15 -1.56 16 19 C -0.15 -2.15 5.06 -27.44 -0.14 -2.29 16 20 C 0.10 1.75 2.32 -27.34 -0.06 1.69 16 21 H 0.04 0.85 6.77 -51.93 -0.35 0.50 16 22 O -0.54 -10.16 11.01 -35.23 -0.39 -10.55 16 23 H 0.02 0.40 7.16 -51.93 -0.37 0.03 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 1.80 7.32 -51.92 -0.38 1.42 16 26 H 0.09 2.62 5.85 -51.93 -0.30 2.32 16 27 H 0.05 1.21 7.35 -51.93 -0.38 0.83 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.03 0.67 6.91 -51.93 -0.36 0.31 16 30 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.07 1.41 6.85 -51.93 -0.36 1.05 16 32 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.06 0.85 6.97 -51.93 -0.36 0.48 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.94 6.65 -51.93 -0.35 0.59 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.74 7.86 -51.93 -0.41 0.33 16 40 H 0.06 0.93 6.63 -51.93 -0.34 0.59 16 41 H 0.35 5.06 8.96 45.56 0.41 5.47 16 LS Contribution 299.67 15.07 4.52 4.52 Total: -1.00 -28.77 299.67 -7.50 -36.27 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -6.32 Total: 4.23 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -0.58 Total: -12.43 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.30 Total: -39.05 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -0.39 Total: -10.55 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.77 -7.50 -36.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088762271.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.203 kcal (2) G-P(sol) polarization free energy of solvation -28.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds