Wall clock time and date at job start Mon Mar 30 2020 05:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47252 * 2 1 4 4 N 1.46504 * 109.47059 * 119.99461 * 2 1 3 5 5 C 1.36942 * 119.99664 * 117.17921 * 4 2 1 6 6 H 1.08002 * 119.99648 * 151.27642 * 5 4 2 7 7 C 1.38809 * 119.99979 * 331.27449 * 5 4 2 8 8 N 1.31617 * 120.00237 * 341.61689 * 7 5 4 9 9 Si 1.86808 * 119.99800 * 161.61678 * 7 5 4 10 10 H 1.48503 * 109.47077 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47029 * 119.99821 * 9 7 5 12 12 H 1.48498 * 109.46992 * 240.00395 * 9 7 5 13 13 C 1.46500 * 120.00443 * 297.18502 * 4 2 1 14 14 H 1.09001 * 108.78367 * 1.43819 * 13 4 2 15 15 C 1.45535 * 108.89782 * 119.99577 * 13 4 2 16 16 C 1.54245 * 112.40869 * 182.69172 * 15 13 4 17 17 C 1.50476 * 108.67984 * 279.91703 * 16 15 13 18 18 C 1.54261 * 112.38598 * 93.93393 * 17 16 15 19 19 C 1.54065 * 112.95270 * 318.57201 * 18 17 16 20 20 C 1.50476 * 112.49590 * 318.17651 * 19 18 17 21 21 H 1.08998 * 109.63152 * 334.43841 * 20 19 18 22 22 O 1.42897 * 109.62735 * 213.85825 * 20 19 18 23 23 H 1.08999 * 109.47545 * 300.00284 * 1 2 3 24 24 H 1.08997 * 109.47169 * 60.00381 * 1 2 3 25 25 H 1.09007 * 109.47391 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47260 * 239.99343 * 2 1 3 27 27 H 1.09002 * 109.47393 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.47233 * 299.99865 * 3 2 1 29 29 H 1.08999 * 109.47078 * 59.99430 * 3 2 1 30 30 H 0.97002 * 119.99949 * 179.97438 * 8 7 5 31 31 H 1.09000 * 108.89541 * 61.93688 * 15 13 4 32 32 H 1.09004 * 108.82167 * 303.39143 * 15 13 4 33 33 H 1.09003 * 109.62492 * 39.71675 * 16 15 13 34 34 H 1.08996 * 109.63023 * 160.10309 * 16 15 13 35 35 H 1.08995 * 108.87044 * 215.02120 * 17 16 15 36 36 H 1.08991 * 108.87530 * 333.46599 * 17 16 15 37 37 H 1.09001 * 108.82819 * 197.61541 * 18 17 16 38 38 H 1.08999 * 108.65878 * 79.41544 * 18 17 16 39 39 H 1.09000 * 108.87840 * 197.40101 * 19 18 17 40 40 H 1.08996 * 108.79373 * 78.89645 * 19 18 17 41 41 H 0.96691 * 114.00224 * 60.96494 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.7572 -1.8367 1.0715 6 1 3.4858 -2.0942 1.8260 7 6 2.5698 -2.6674 -0.0247 8 7 1.4710 -2.5716 -0.7428 9 14 3.8773 -3.9213 -0.4806 10 1 5.0074 -3.8291 0.4783 11 1 3.2941 -5.2860 -0.4278 12 1 4.3694 -3.6460 -1.8544 13 6 1.7160 -0.1550 2.5260 14 1 1.1019 0.7384 2.4132 15 6 0.9656 -1.1513 3.2759 16 6 0.5459 -0.6440 4.6708 17 6 1.7218 -0.7657 5.6018 18 6 2.5424 0.5378 5.6853 19 6 2.7313 1.2176 4.3157 20 6 3.0376 0.2317 3.2209 21 1 3.5004 -0.6579 3.6482 22 8 3.9227 0.8287 2.2711 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.3403 -3.1519 -1.5090 31 1 1.5826 -2.0419 3.3951 32 1 0.0707 -1.4152 2.7124 33 1 0.2386 0.3996 4.6037 34 1 -0.2818 -1.2461 5.0456 35 1 1.3587 -1.0247 6.5964 36 1 2.3716 -1.5653 5.2464 37 1 3.5232 0.3100 6.1029 38 1 2.0304 1.2300 6.3537 39 1 3.5516 1.9319 4.3866 40 1 1.8176 1.7546 4.0612 41 1 4.7746 1.0965 2.6417 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088762271.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:02 Heat of formation + Delta-G solvation = -57.897322 kcal Electronic energy + Delta-G solvation = -19607.233052 eV Core-core repulsion = 16907.615610 eV Total energy + Delta-G solvation = -2699.617442 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.54253 -37.47527 -36.51278 -33.69915 -33.29205 -31.72488 -29.90810 -27.59430 -26.07875 -25.03306 -24.44806 -21.57946 -20.88479 -20.27515 -18.33649 -17.73847 -16.84252 -16.21653 -16.01271 -15.56866 -15.18778 -14.77372 -14.42111 -14.13031 -13.91608 -13.89904 -13.46025 -13.29383 -13.08028 -12.82731 -12.74144 -12.59493 -12.21278 -12.06166 -11.95250 -11.69128 -11.63700 -11.49113 -11.33869 -11.23406 -11.00034 -10.88452 -10.39438 -10.28252 -8.41367 -7.71261 -5.11391 1.44835 1.48485 1.56479 2.58552 3.39860 3.54038 3.59217 4.00156 4.13683 4.19827 4.36948 4.39016 4.45969 4.53556 4.61250 4.66607 4.82673 4.89558 4.97617 5.01037 5.04717 5.08238 5.14513 5.19164 5.28990 5.30816 5.34857 5.41845 5.46444 5.50513 5.57738 5.61976 5.73169 5.82423 5.89858 6.11975 6.58993 7.24241 7.34757 8.09828 8.57530 9.32964 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022327 B = 0.009785 C = 0.008909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.780749 B = 2860.851434 C = 3141.968078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.179 3.821 3 C -0.136 4.136 4 N -0.581 5.581 5 C -0.220 4.220 6 H 0.049 0.951 7 C -0.052 4.052 8 N -0.922 5.922 9 Si 0.947 3.053 10 H -0.275 1.275 11 H -0.297 1.297 12 H -0.297 1.297 13 C 0.187 3.813 14 H 0.048 0.952 15 C -0.111 4.111 16 C -0.109 4.109 17 C -0.119 4.119 18 C -0.107 4.107 19 C -0.141 4.141 20 C 0.105 3.895 21 H 0.030 0.970 22 O -0.560 6.560 23 H 0.033 0.967 24 H 0.040 0.960 25 H 0.038 0.962 26 H 0.056 0.944 27 H 0.041 0.959 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.242 0.758 31 H 0.040 0.960 32 H 0.033 0.967 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.043 0.957 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.843 7.967 11.595 14.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.073 3.927 3 C -0.195 4.195 4 N -0.301 5.301 5 C -0.352 4.352 6 H 0.067 0.933 7 C -0.247 4.247 8 N -0.569 5.569 9 Si 0.777 3.223 10 H -0.199 1.199 11 H -0.225 1.225 12 H -0.224 1.224 13 C 0.080 3.920 14 H 0.067 0.933 15 C -0.150 4.150 16 C -0.147 4.147 17 C -0.156 4.156 18 C -0.145 4.145 19 C -0.179 4.179 20 C 0.045 3.955 21 H 0.048 0.952 22 O -0.365 6.365 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 0.302 7.766 11.059 13.516 hybrid contribution 1.014 -1.024 -0.419 1.501 sum 1.316 6.741 10.640 12.664 Atomic orbital electron populations 1.21960 0.98475 1.00047 0.98397 1.20156 0.91677 0.90114 0.90780 1.22082 1.00460 0.97496 0.99427 1.44002 1.61097 1.25225 0.99744 1.19089 1.11480 0.97934 1.06668 0.93306 1.25497 0.98068 0.99651 1.01497 1.70176 1.24841 1.41370 1.20552 0.85509 0.80164 0.79168 0.77417 1.19946 1.22506 1.22436 1.19265 0.92319 0.94778 0.85589 0.93342 1.20783 0.98940 0.99165 0.96092 1.21305 0.98162 1.01530 0.93731 1.21376 0.96605 0.97889 0.99741 1.21854 1.00240 0.96538 0.95851 1.22043 1.02467 0.98451 0.94980 1.21809 0.91812 0.93547 0.88381 0.95204 1.86729 1.29076 1.81885 1.38767 0.94812 0.94048 0.94311 0.92634 0.93940 0.93569 0.93879 0.94851 0.94080 0.94781 0.91238 0.91480 0.90541 0.93793 0.91694 0.90521 0.90652 0.92236 0.78280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.91 9.05 71.98 0.65 -5.26 16 2 C 0.18 8.74 2.32 44.99 0.10 8.84 16 3 C -0.14 -5.64 8.38 71.98 0.60 -5.03 16 4 N -0.58 -28.56 1.69 -664.62 -1.12 -29.68 16 5 C -0.22 -12.10 8.14 84.03 0.68 -11.42 16 6 H 0.05 2.73 7.46 -2.91 -0.02 2.70 16 7 C -0.05 -2.96 4.85 84.86 0.41 -2.55 16 8 N -0.92 -54.31 10.28 21.65 0.22 -54.09 16 9 Si 0.95 46.49 29.59 68.60 2.03 48.52 16 10 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 12 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 13 C 0.19 7.56 1.09 43.13 0.05 7.61 16 14 H 0.05 1.95 5.30 -2.39 -0.01 1.94 16 15 C -0.11 -4.30 4.44 28.74 0.13 -4.17 16 16 C -0.11 -3.07 5.59 30.20 0.17 -2.90 16 17 C -0.12 -2.90 5.34 30.21 0.16 -2.74 16 18 C -0.11 -2.31 5.85 31.38 0.18 -2.12 16 19 C -0.14 -3.64 5.06 30.14 0.15 -3.49 16 20 C 0.11 3.65 2.32 30.20 0.07 3.72 16 21 H 0.03 1.12 6.77 -2.39 -0.02 1.11 16 22 O -0.56 -20.43 11.01 -148.98 -1.64 -22.07 16 23 H 0.03 1.39 7.16 -2.39 -0.02 1.37 16 24 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.04 1.99 7.32 -2.38 -0.02 1.98 16 26 H 0.06 3.16 5.85 -2.39 -0.01 3.15 16 27 H 0.04 1.84 7.35 -2.39 -0.02 1.82 16 28 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.04 1.67 6.91 -2.39 -0.02 1.66 16 30 H 0.24 14.03 8.31 -92.71 -0.77 13.26 16 31 H 0.04 1.78 6.85 -2.39 -0.02 1.76 16 32 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.07 1.82 6.97 -2.39 -0.02 1.80 16 34 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.04 1.25 6.65 -2.39 -0.02 1.23 16 37 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.07 1.68 7.86 -2.39 -0.02 1.66 16 40 H 0.06 1.58 6.63 -2.39 -0.02 1.57 16 41 H 0.37 9.97 8.96 -74.06 -0.66 9.30 16 Total: -1.00 -63.30 299.67 3.19 -60.11 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.33 Total: 16.71 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: 3.37 Total: -19.50 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -0.90 Total: -83.77 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -1.64 Total: -22.07 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -63.30 3.19 -60.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088762271.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.213 kcal (2) G-P(sol) polarization free energy of solvation -63.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds