Wall clock time and date at job start Mon Mar 30 2020 04:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53004 * 109.47574 * 2 1 4 4 H 1.08997 * 109.47223 * 53.91342 * 3 2 1 5 5 C 1.50696 * 109.47408 * 173.91918 * 3 2 1 6 6 H 1.08003 * 120.00009 * 114.55492 * 5 3 2 7 7 C 1.37878 * 119.99918 * 294.55579 * 5 3 2 8 8 N 1.31506 * 119.99942 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99806 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47479 * 59.99943 * 9 7 5 11 11 H 1.48501 * 109.47170 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47130 * 299.99571 * 9 7 5 13 13 N 1.46903 * 109.46638 * 293.91670 * 3 2 1 14 14 C 1.39775 * 111.00283 * 314.51737 * 13 3 2 15 15 C 1.54427 * 111.77384 * 189.13073 * 14 13 3 16 16 C 1.50765 * 109.02306 * 282.59369 * 15 14 13 17 17 C 1.54168 * 112.60398 * 93.01454 * 16 15 14 18 18 C 1.53811 * 111.97482 * 318.48423 * 17 16 15 19 19 C 1.47640 * 110.99695 * 83.41535 * 13 3 2 20 20 H 1.09000 * 109.74356 * 269.98145 * 19 13 3 21 21 C 1.53001 * 109.74827 * 30.65933 * 19 13 3 22 22 O 1.42900 * 109.47092 * 62.66916 * 21 19 13 23 23 H 1.08993 * 109.47660 * 186.43755 * 1 2 3 24 24 H 1.09002 * 109.47183 * 306.44212 * 1 2 3 25 25 H 1.09000 * 109.47276 * 66.44038 * 1 2 3 26 26 H 1.09004 * 109.47644 * 239.99627 * 2 1 3 27 27 H 1.09008 * 109.47300 * 119.99560 * 2 1 3 28 28 H 0.97003 * 119.99861 * 180.02562 * 8 7 5 29 29 H 1.08995 * 109.02214 * 309.72361 * 14 13 3 30 30 H 1.09005 * 109.01966 * 68.54068 * 14 13 3 31 31 H 1.08995 * 109.55027 * 42.45220 * 15 14 13 32 32 H 1.09001 * 109.55095 * 162.64052 * 15 14 13 33 33 H 1.08996 * 108.85177 * 213.82212 * 16 15 14 34 34 H 1.09000 * 108.85254 * 332.20894 * 16 15 14 35 35 H 1.09000 * 108.97868 * 79.12965 * 17 16 15 36 36 H 1.08999 * 108.97805 * 197.83974 * 17 16 15 37 37 H 1.09008 * 109.04956 * 198.48582 * 18 17 16 38 38 H 1.09005 * 109.05209 * 79.59591 * 18 17 16 39 39 H 1.08993 * 109.46576 * 182.67087 * 21 19 13 40 40 H 1.09003 * 109.46646 * 302.67308 * 21 19 13 41 41 H 0.96700 * 113.99344 * 184.98864 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5905 1.9869 0.8305 5 6 3.5394 1.4451 0.1505 6 1 4.1624 1.8045 -0.6552 7 6 4.1160 0.9888 1.3168 8 7 3.3574 0.5517 2.2981 9 14 5.9746 0.9927 1.5036 10 1 6.4824 2.3819 1.3721 11 1 6.3390 0.4564 2.8396 12 1 6.5800 0.1422 0.4476 13 7 1.6739 2.0913 -1.2661 14 6 1.9467 1.2569 -2.3538 15 6 1.7836 1.9975 -3.6990 16 6 0.3153 2.1147 -4.0206 17 6 -0.2971 3.4382 -3.5206 18 6 0.2110 3.8139 -2.1183 19 6 0.2921 2.6088 -1.2151 20 1 -0.4013 1.8422 -1.5609 21 6 -0.0563 3.0120 0.2191 22 8 0.8061 4.0713 0.6390 23 1 -0.3634 -1.0211 0.1152 24 1 -0.3634 0.6105 0.8267 25 1 -0.3634 0.4108 -0.9420 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 3.7630 0.2310 3.1188 29 1 2.9698 0.8899 -2.2722 30 1 1.2634 0.4080 -2.3306 31 1 2.2206 2.9931 -3.6226 32 1 2.2873 1.4378 -4.4871 33 1 0.1853 2.0523 -5.1010 34 1 -0.2145 1.2834 -3.5555 35 1 -0.0366 4.2349 -4.2174 36 1 -1.3820 3.3373 -3.4894 37 1 -0.4681 4.5438 -1.6775 38 1 1.2018 4.2598 -2.2064 39 1 -1.0921 3.3487 0.2603 40 1 0.0736 2.1544 0.8793 41 1 0.6933 4.3265 1.5648 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124630015.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:29 Heat of formation + Delta-G solvation = -33.295407 kcal Electronic energy + Delta-G solvation = -19654.116281 eV Core-core repulsion = 16955.565659 eV Total energy + Delta-G solvation = -2698.550623 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.68274 -35.85879 -35.15647 -32.26900 -31.81046 -30.67368 -27.74127 -26.31512 -24.93524 -22.84267 -22.47134 -20.80783 -18.84928 -18.52667 -16.69738 -16.37478 -15.69127 -14.71359 -14.50442 -14.24861 -14.17189 -13.36473 -13.17102 -12.91037 -12.59584 -12.26932 -11.92312 -11.53416 -11.30884 -11.25228 -11.10803 -10.83554 -10.62792 -10.60464 -10.29698 -10.20432 -9.97759 -9.96679 -9.67122 -9.53751 -9.44040 -9.04128 -8.68675 -8.17105 -6.77595 -5.91688 -3.90941 3.38903 3.42377 3.46718 4.49991 4.85359 5.08316 5.23143 5.26178 5.37156 5.41333 5.60513 5.70927 5.84362 5.87493 5.96466 6.05326 6.12425 6.18714 6.21102 6.32399 6.36742 6.39930 6.48531 6.53005 6.62861 6.64909 6.82247 6.90694 6.93203 7.05741 7.07229 7.31978 7.63748 7.82099 7.97157 8.31928 8.40402 8.70324 8.83405 9.15256 9.72016 11.16431 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025545 B = 0.008962 C = 0.008373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.839029 B = 3123.596528 C = 3343.172324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.153 4.153 3 C 0.211 3.789 4 H 0.064 0.936 5 C -0.486 4.486 6 H 0.058 0.942 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.892 3.108 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.280 1.280 13 N -0.532 5.532 14 C 0.083 3.917 15 C -0.123 4.123 16 C -0.117 4.117 17 C -0.116 4.116 18 C -0.105 4.105 19 C 0.095 3.905 20 H 0.052 0.948 21 C 0.065 3.935 22 O -0.548 6.548 23 H 0.031 0.969 24 H 0.049 0.951 25 H 0.044 0.956 26 H 0.039 0.961 27 H 0.086 0.914 28 H 0.258 0.742 29 H 0.075 0.925 30 H 0.010 0.990 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.027 0.973 40 H 0.071 0.929 41 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.976 2.806 -6.724 10.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.192 4.192 3 C 0.106 3.894 4 H 0.082 0.918 5 C -0.524 4.524 6 H 0.076 0.924 7 C -0.143 4.143 8 N -0.540 5.540 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.206 1.206 13 N -0.255 5.255 14 C -0.048 4.048 15 C -0.161 4.161 16 C -0.154 4.154 17 C -0.154 4.154 18 C -0.143 4.143 19 C -0.012 4.012 20 H 0.069 0.931 21 C -0.012 4.012 22 O -0.351 6.351 23 H 0.051 0.949 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.105 0.895 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.027 0.973 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.045 0.955 40 H 0.089 0.911 41 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -7.479 3.068 -7.244 10.855 hybrid contribution 0.246 -0.804 0.806 1.165 sum -7.233 2.263 -6.438 9.944 Atomic orbital electron populations 1.22289 0.99798 0.99534 1.00136 1.22272 0.91622 1.03052 1.02272 1.19589 0.95664 0.87903 0.86287 0.91828 1.21111 0.91265 1.39769 1.00300 0.92404 1.24880 0.97710 0.95853 0.95904 1.69892 1.34554 1.43989 1.05526 0.86660 0.86214 0.78257 0.76813 1.20370 1.21616 1.20584 1.59041 1.19282 1.42578 1.04630 1.20876 1.01138 0.92936 0.89802 1.21572 0.95276 1.01746 0.97494 1.21400 0.97007 0.97604 0.99414 1.21931 0.99005 0.97047 0.97378 1.21359 1.02190 0.97619 0.93178 1.21428 0.91136 0.95722 0.92952 0.93059 1.22709 0.90853 0.91098 0.96561 1.86649 1.63259 1.54321 1.30858 0.94942 0.93260 0.93755 0.94273 0.89523 0.93235 0.90651 0.97261 0.91115 0.92715 0.93321 0.92829 0.92866 0.93278 0.92960 0.90426 0.95501 0.91135 0.78928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 8.40 37.15 0.31 -2.78 16 2 C -0.15 -3.52 4.77 -26.73 -0.13 -3.65 16 3 C 0.21 5.10 1.49 -68.86 -0.10 5.00 16 4 H 0.06 1.65 4.29 -51.93 -0.22 1.43 16 5 C -0.49 -13.30 7.91 -34.44 -0.27 -13.58 16 6 H 0.06 1.63 7.47 -52.48 -0.39 1.23 16 7 C 0.06 1.56 5.29 -17.82 -0.09 1.46 16 8 N -0.90 -25.35 11.72 55.43 0.65 -24.70 16 9 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.53 -11.24 3.71 -225.41 -0.84 -12.07 16 14 C 0.08 1.62 3.70 -6.75 -0.02 1.60 16 15 C -0.12 -2.00 5.65 -27.10 -0.15 -2.16 16 16 C -0.12 -1.68 5.31 -27.24 -0.14 -1.82 16 17 C -0.12 -1.62 5.91 -25.70 -0.15 -1.78 16 18 C -0.11 -1.75 4.54 -27.40 -0.12 -1.87 16 19 C 0.10 1.74 1.27 -68.40 -0.09 1.65 16 20 H 0.05 0.92 4.19 -51.93 -0.22 0.70 16 21 C 0.07 1.17 5.22 37.16 0.19 1.37 16 22 O -0.55 -10.45 12.28 -35.23 -0.43 -10.88 16 23 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.93 5.80 -51.93 -0.30 0.63 16 25 H 0.04 0.80 4.34 -51.93 -0.23 0.57 16 26 H 0.04 0.90 6.16 -51.93 -0.32 0.58 16 27 H 0.09 2.26 6.40 -51.92 -0.33 1.93 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.08 1.64 6.93 -51.93 -0.36 1.28 16 30 H 0.01 0.19 5.08 -51.93 -0.26 -0.07 16 31 H 0.07 1.22 7.11 -51.93 -0.37 0.85 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.80 6.58 -51.93 -0.34 0.46 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.82 7.72 -51.92 -0.40 0.42 16 38 H 0.08 1.46 7.26 -51.93 -0.38 1.09 16 39 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 1.38 3.32 -51.93 -0.17 1.21 16 41 H 0.37 5.51 9.12 45.56 0.42 5.93 16 LS Contribution 286.97 15.07 4.32 4.32 Total: -1.00 -28.80 286.97 -7.64 -36.45 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -5.55 Total: 6.78 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -0.78 Total: -16.55 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.19 Total: -36.77 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -0.43 Total: -10.88 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.80 -7.64 -36.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124630015.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.150 kcal (2) G-P(sol) polarization free energy of solvation -28.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds