Wall clock time and date at job start Mon Mar 30 2020 04:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46890 * 2 1 4 4 H 1.08999 * 109.46864 * 305.32340 * 3 2 1 5 5 C 1.50697 * 109.46845 * 185.32811 * 3 2 1 6 6 H 1.08010 * 119.99707 * 245.36309 * 5 3 2 7 7 C 1.37881 * 120.00460 * 65.36613 * 5 3 2 8 8 N 1.31512 * 119.99700 * 11.07932 * 7 5 3 9 9 Si 1.86801 * 120.00119 * 191.07976 * 7 5 3 10 10 H 1.48498 * 109.46752 * 269.99905 * 9 7 5 11 11 H 1.48500 * 109.47283 * 29.99918 * 9 7 5 12 12 H 1.48497 * 109.46895 * 150.00015 * 9 7 5 13 13 N 1.46896 * 109.47270 * 65.32705 * 3 2 1 14 14 C 1.46902 * 111.00125 * 205.35531 * 13 3 2 15 15 H 1.09006 * 108.84783 * 316.38866 * 14 13 3 16 16 C 1.54065 * 108.87868 * 74.85162 * 14 13 3 17 17 C 1.54062 * 112.81661 * 162.49342 * 16 14 13 18 18 C 1.50471 * 112.49988 * 41.72277 * 17 16 14 19 19 C 1.54245 * 108.52500 * 265.85053 * 18 17 16 20 20 C 1.45551 * 112.40145 * 79.97605 * 19 18 17 21 21 C 1.50468 * 108.87564 * 197.83090 * 14 13 3 22 22 H 1.09003 * 109.62618 * 264.76925 * 21 14 13 23 23 O 1.42898 * 109.63390 * 25.16082 * 21 14 13 24 24 H 1.08997 * 109.46896 * 304.31323 * 1 2 3 25 25 H 1.08999 * 109.46942 * 64.31466 * 1 2 3 26 26 H 1.09005 * 109.46934 * 184.31579 * 1 2 3 27 27 H 1.08994 * 109.47501 * 240.00290 * 2 1 3 28 28 H 1.09003 * 109.47338 * 119.99586 * 2 1 3 29 29 H 0.97003 * 120.00193 * 358.54734 * 8 7 5 30 30 H 1.00897 * 111.00350 * 81.39536 * 13 3 2 31 31 H 1.09002 * 108.81282 * 283.35750 * 16 14 13 32 32 H 1.08997 * 108.81171 * 41.63219 * 16 14 13 33 33 H 1.08994 * 108.88201 * 280.93742 * 17 16 14 34 34 H 1.09010 * 108.79738 * 162.43997 * 17 16 14 35 35 H 1.09001 * 109.63226 * 146.14213 * 18 17 16 36 36 H 1.08998 * 109.78915 * 25.65178 * 18 17 16 37 37 H 1.08997 * 108.89722 * 319.22565 * 19 18 17 38 38 H 1.08998 * 108.89955 * 200.72622 * 19 18 17 39 39 H 1.08997 * 108.89521 * 177.30217 * 20 19 18 40 40 H 1.08995 * 108.81281 * 58.76530 * 20 19 18 41 41 H 0.96703 * 114.00032 * 180.02562 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6008 1.9831 -0.8385 5 6 3.5412 1.4446 -0.1319 6 1 4.1541 1.8088 0.6795 7 6 4.1323 0.9817 -1.2884 8 7 3.3975 0.7442 -2.3529 9 14 5.9769 0.6919 -1.3431 10 1 6.6600 1.9338 -1.7861 11 1 6.4595 0.3173 0.0104 12 1 6.2774 -0.4057 -2.2971 13 7 1.6581 2.0970 1.2585 14 6 1.5701 3.5535 1.0890 15 1 2.4265 3.8925 0.5059 16 6 0.2798 3.8885 0.3167 17 6 -0.1315 5.3669 0.4532 18 6 1.0432 6.3024 0.3587 19 6 1.5432 6.6070 1.7858 20 6 2.3768 5.5406 2.3209 21 6 1.6154 4.2050 2.4445 22 1 0.6004 4.3932 2.7944 23 8 2.2899 3.3472 3.3672 24 1 -0.3633 0.5793 0.8488 25 1 -0.3633 0.4454 -0.9261 26 1 -0.3633 -1.0248 0.0773 27 1 1.8934 -0.5137 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.4369 0.8745 -2.3181 30 1 2.2992 1.8573 1.9998 31 1 0.4329 3.6621 -0.7385 32 1 -0.5285 3.2624 0.6945 33 1 -0.6194 5.5097 1.4174 34 1 -0.8398 5.6091 -0.3392 35 1 0.7357 7.2286 -0.1269 36 1 1.8420 5.8349 -0.2170 37 1 0.6820 6.7438 2.4398 38 1 2.1208 7.5312 1.7677 39 1 2.7363 5.8347 3.3069 40 1 3.2329 5.3992 1.6613 41 1 2.3547 3.7062 4.2628 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130738085.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:43 Heat of formation + Delta-G solvation = -75.878096 kcal Electronic energy + Delta-G solvation = -19015.666268 eV Core-core repulsion = 16315.269122 eV Total energy + Delta-G solvation = -2700.397147 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.33013 -35.94693 -35.61716 -32.81893 -31.45630 -31.03540 -28.67625 -25.57403 -24.27139 -23.21906 -22.44868 -20.62876 -19.60220 -18.59225 -17.34188 -16.71160 -15.69878 -14.71355 -14.22660 -14.12618 -13.75176 -13.70941 -13.59344 -13.00061 -12.90386 -12.28391 -12.19332 -11.94157 -11.69017 -11.39641 -11.01040 -10.84963 -10.67354 -10.48557 -10.47098 -10.33015 -10.22207 -10.08820 -9.98466 -9.58702 -9.50917 -9.44491 -8.79116 -8.18086 -7.07124 -6.25803 -4.00637 3.43957 3.49010 3.64411 4.49262 4.56748 4.76120 4.76759 5.14172 5.24132 5.38957 5.40750 5.47179 5.55660 5.62107 5.68832 5.92863 6.09702 6.15154 6.23929 6.25157 6.29482 6.34072 6.36450 6.40293 6.42901 6.53550 6.59093 6.75962 6.90176 6.98106 7.01304 7.29501 7.45266 7.66171 7.92822 8.14572 8.25164 8.64178 8.86274 8.94750 9.71524 11.06286 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020988 B = 0.008252 C = 0.007408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.759349 B = 3392.193955 C = 3778.806829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C 0.200 3.800 4 H 0.024 0.976 5 C -0.623 4.623 6 H 0.047 0.953 7 C 0.025 3.975 8 N -0.909 5.909 9 Si 1.062 2.938 10 H -0.291 1.291 11 H -0.289 1.289 12 H -0.284 1.284 13 N -0.675 5.675 14 C 0.102 3.898 15 H 0.045 0.955 16 C -0.106 4.106 17 C -0.117 4.117 18 C -0.122 4.122 19 C -0.112 4.112 20 C -0.151 4.151 21 C 0.115 3.885 22 H 0.053 0.947 23 O -0.555 6.555 24 H 0.056 0.944 25 H 0.035 0.965 26 H 0.027 0.973 27 H 0.058 0.942 28 H 0.041 0.959 29 H 0.271 0.729 30 H 0.346 0.654 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.410 9.666 8.366 13.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.146 4.146 3 C 0.091 3.909 4 H 0.042 0.958 5 C -0.662 4.662 6 H 0.065 0.935 7 C -0.180 4.180 8 N -0.545 5.545 9 Si 0.891 3.109 10 H -0.218 1.218 11 H -0.215 1.215 12 H -0.210 1.210 13 N -0.309 5.309 14 C -0.009 4.009 15 H 0.063 0.937 16 C -0.145 4.145 17 C -0.155 4.155 18 C -0.160 4.160 19 C -0.149 4.149 20 C -0.189 4.189 21 C 0.056 3.944 22 H 0.071 0.929 23 O -0.359 6.359 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.047 0.953 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.167 0.833 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -4.794 8.681 6.753 11.998 hybrid contribution -0.220 1.131 1.349 1.774 sum -5.014 9.812 8.103 13.678 Atomic orbital electron populations 1.21724 0.98394 0.98875 1.00718 1.21532 0.92819 0.99713 1.00491 1.19257 0.93607 0.90485 0.87505 0.95818 1.22655 0.92540 1.46878 1.04104 0.93465 1.25669 1.06422 0.93826 0.92093 1.70767 1.08234 1.46487 1.28971 0.83658 0.74994 0.76799 0.75432 1.21771 1.21535 1.20990 1.60799 1.55816 1.04798 1.09485 1.21031 0.96791 0.91019 0.92037 0.93670 1.21943 0.97716 0.94298 1.00525 1.21350 0.97587 0.95309 1.01252 1.21392 0.98981 0.99031 0.96581 1.20393 0.99629 0.98104 0.96781 1.21219 1.00185 0.96102 1.01409 1.21604 0.93701 0.88278 0.90840 0.92918 1.86508 1.80477 1.46692 1.22231 0.92498 0.94559 0.95343 0.92336 0.94026 0.91740 0.83325 0.92148 0.91651 0.92570 0.92560 0.92277 0.91082 0.92468 0.92466 0.92359 0.91249 0.78633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.85 37.16 0.37 -2.50 16 2 C -0.11 -2.58 5.33 -26.73 -0.14 -2.72 16 3 C 0.20 5.05 1.40 -68.86 -0.10 4.95 16 4 H 0.02 0.65 5.88 -51.93 -0.31 0.35 16 5 C -0.62 -17.55 8.18 -34.44 -0.28 -17.83 16 6 H 0.05 1.37 7.72 -52.48 -0.41 0.96 16 7 C 0.03 0.72 5.13 -17.82 -0.09 0.63 16 8 N -0.91 -27.30 12.99 55.43 0.72 -26.58 16 9 Si 1.06 25.72 29.92 -169.99 -5.09 20.64 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.68 -14.86 5.32 -101.70 -0.54 -15.40 16 14 C 0.10 1.96 1.86 -68.42 -0.13 1.83 16 15 H 0.05 1.01 6.19 -51.93 -0.32 0.69 16 16 C -0.11 -1.83 4.98 -25.62 -0.13 -1.96 16 17 C -0.12 -1.58 5.31 -27.44 -0.15 -1.73 16 18 C -0.12 -1.59 5.60 -27.34 -0.15 -1.74 16 19 C -0.11 -1.32 5.26 -29.59 -0.16 -1.47 16 20 C -0.15 -2.03 4.94 -29.60 -0.15 -2.18 16 21 C 0.12 1.79 3.04 -27.35 -0.08 1.71 16 22 H 0.05 0.77 6.98 -51.93 -0.36 0.41 16 23 O -0.55 -8.87 11.23 -35.23 -0.40 -9.26 16 24 H 0.06 1.14 7.65 -51.93 -0.40 0.74 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 1.55 6.51 -51.93 -0.34 1.21 16 28 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.27 8.13 6.24 -40.82 -0.25 7.88 16 30 H 0.35 8.04 6.35 -39.29 -0.25 7.79 16 31 H 0.06 1.16 7.19 -51.93 -0.37 0.79 16 32 H 0.06 1.14 8.12 -51.93 -0.42 0.72 16 33 H 0.06 0.70 6.63 -51.93 -0.34 0.35 16 34 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 1.08 6.99 -51.93 -0.36 0.72 16 37 H 0.06 0.61 7.47 -51.93 -0.39 0.22 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 40 H 0.07 1.09 7.47 -51.93 -0.39 0.70 16 41 H 0.37 3.98 9.06 45.56 0.41 4.39 16 LS Contribution 305.06 15.07 4.60 4.60 Total: -1.00 -30.28 305.06 -8.14 -38.42 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -6.25 Total: 10.62 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: -1.18 Total: -23.03 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.18 Total: -41.98 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: -0.40 Total: -9.26 kcal Atomic # 14 Polarization: 25.72 SS G_CDS: -5.09 Total: 20.64 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.28 -8.14 -38.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130738085.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.459 kcal (2) G-P(sol) polarization free energy of solvation -30.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds