Wall clock time and date at job start Mon Mar 30 2020 04:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46890 * 2 1 4 4 H 1.08999 * 109.46864 * 305.32340 * 3 2 1 5 5 C 1.50697 * 109.46845 * 185.32811 * 3 2 1 6 6 H 1.08010 * 119.99707 * 245.36309 * 5 3 2 7 7 C 1.37881 * 120.00460 * 65.36613 * 5 3 2 8 8 N 1.31512 * 119.99700 * 11.07932 * 7 5 3 9 9 Si 1.86801 * 120.00119 * 191.07976 * 7 5 3 10 10 H 1.48498 * 109.46752 * 269.99905 * 9 7 5 11 11 H 1.48500 * 109.47283 * 29.99918 * 9 7 5 12 12 H 1.48497 * 109.46895 * 150.00015 * 9 7 5 13 13 N 1.46896 * 109.47270 * 65.32705 * 3 2 1 14 14 C 1.46902 * 111.00125 * 205.35531 * 13 3 2 15 15 H 1.09006 * 108.84783 * 316.38866 * 14 13 3 16 16 C 1.54065 * 108.87868 * 74.85162 * 14 13 3 17 17 C 1.54062 * 112.81661 * 162.49342 * 16 14 13 18 18 C 1.50471 * 112.49988 * 41.72277 * 17 16 14 19 19 C 1.54245 * 108.52500 * 265.85053 * 18 17 16 20 20 C 1.45551 * 112.40145 * 79.97605 * 19 18 17 21 21 C 1.50468 * 108.87564 * 197.83090 * 14 13 3 22 22 H 1.09003 * 109.62618 * 264.76925 * 21 14 13 23 23 O 1.42898 * 109.63390 * 25.16082 * 21 14 13 24 24 H 1.08997 * 109.46896 * 304.31323 * 1 2 3 25 25 H 1.08999 * 109.46942 * 64.31466 * 1 2 3 26 26 H 1.09005 * 109.46934 * 184.31579 * 1 2 3 27 27 H 1.08994 * 109.47501 * 240.00290 * 2 1 3 28 28 H 1.09003 * 109.47338 * 119.99586 * 2 1 3 29 29 H 0.97003 * 120.00193 * 358.54734 * 8 7 5 30 30 H 1.00897 * 111.00350 * 81.39536 * 13 3 2 31 31 H 1.09002 * 108.81282 * 283.35750 * 16 14 13 32 32 H 1.08997 * 108.81171 * 41.63219 * 16 14 13 33 33 H 1.08994 * 108.88201 * 280.93742 * 17 16 14 34 34 H 1.09010 * 108.79738 * 162.43997 * 17 16 14 35 35 H 1.09001 * 109.63226 * 146.14213 * 18 17 16 36 36 H 1.08998 * 109.78915 * 25.65178 * 18 17 16 37 37 H 1.08997 * 108.89722 * 319.22565 * 19 18 17 38 38 H 1.08998 * 108.89955 * 200.72622 * 19 18 17 39 39 H 1.08997 * 108.89521 * 177.30217 * 20 19 18 40 40 H 1.08995 * 108.81281 * 58.76530 * 20 19 18 41 41 H 0.96703 * 114.00032 * 180.02562 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6008 1.9831 -0.8385 5 6 3.5412 1.4446 -0.1319 6 1 4.1541 1.8088 0.6795 7 6 4.1323 0.9817 -1.2884 8 7 3.3975 0.7442 -2.3529 9 14 5.9769 0.6919 -1.3431 10 1 6.6600 1.9338 -1.7861 11 1 6.4595 0.3173 0.0104 12 1 6.2774 -0.4057 -2.2971 13 7 1.6581 2.0970 1.2585 14 6 1.5701 3.5535 1.0890 15 1 2.4265 3.8925 0.5059 16 6 0.2798 3.8885 0.3167 17 6 -0.1315 5.3669 0.4532 18 6 1.0432 6.3024 0.3587 19 6 1.5432 6.6070 1.7858 20 6 2.3768 5.5406 2.3209 21 6 1.6154 4.2050 2.4445 22 1 0.6004 4.3932 2.7944 23 8 2.2899 3.3472 3.3672 24 1 -0.3633 0.5793 0.8488 25 1 -0.3633 0.4454 -0.9261 26 1 -0.3633 -1.0248 0.0773 27 1 1.8934 -0.5137 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.4369 0.8745 -2.3181 30 1 2.2992 1.8573 1.9998 31 1 0.4329 3.6621 -0.7385 32 1 -0.5285 3.2624 0.6945 33 1 -0.6194 5.5097 1.4174 34 1 -0.8398 5.6091 -0.3392 35 1 0.7357 7.2286 -0.1269 36 1 1.8420 5.8349 -0.2170 37 1 0.6820 6.7438 2.4398 38 1 2.1208 7.5312 1.7677 39 1 2.7363 5.8347 3.3069 40 1 3.2329 5.3992 1.6613 41 1 2.3547 3.7062 4.2628 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130738085.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:42 Heat of formation + Delta-G solvation = -97.023596 kcal Electronic energy + Delta-G solvation = -19016.583206 eV Core-core repulsion = 16315.269122 eV Total energy + Delta-G solvation = -2701.314084 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.64075 -37.77916 -36.80740 -34.58728 -33.23968 -32.42315 -30.21755 -27.48131 -25.64775 -24.91555 -24.03065 -21.93378 -21.35502 -20.01583 -19.09261 -18.30701 -17.18576 -16.24390 -15.71968 -15.46315 -15.37888 -15.24619 -14.88408 -14.85241 -14.21699 -14.07308 -13.63191 -13.53604 -13.23546 -13.05119 -12.64502 -12.40772 -12.22466 -12.21917 -12.00710 -11.76459 -11.68522 -11.62046 -11.45081 -11.24008 -11.07260 -10.86990 -10.64143 -10.38788 -9.04719 -8.50006 -6.32603 1.45592 1.54271 1.72561 2.52428 3.15671 3.26939 3.47583 3.69693 3.96922 4.06514 4.15676 4.26453 4.31856 4.38855 4.46268 4.50074 4.54827 4.67023 4.77184 4.89004 4.97568 4.99686 5.06430 5.16987 5.18618 5.21257 5.23765 5.30643 5.33428 5.38643 5.46228 5.50469 5.52314 5.68279 6.00715 6.05584 6.55706 6.60860 6.83731 7.15644 7.47714 8.74278 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020988 B = 0.008252 C = 0.007408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.759349 B = 3392.193955 C = 3778.806829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.102 4.102 3 C 0.207 3.793 4 H -0.004 1.004 5 C -0.632 4.632 6 H 0.033 0.967 7 C -0.023 4.023 8 N -0.928 5.928 9 Si 1.107 2.893 10 H -0.278 1.278 11 H -0.276 1.276 12 H -0.279 1.279 13 N -0.666 5.666 14 C 0.101 3.899 15 H 0.002 0.998 16 C -0.100 4.100 17 C -0.110 4.110 18 C -0.125 4.125 19 C -0.110 4.110 20 C -0.143 4.143 21 C 0.120 3.880 22 H 0.075 0.925 23 O -0.578 6.578 24 H 0.063 0.937 25 H 0.033 0.967 26 H 0.052 0.948 27 H 0.030 0.970 28 H 0.037 0.963 29 H 0.260 0.740 30 H 0.339 0.661 31 H 0.026 0.974 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.035 0.965 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.035 0.965 41 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.118 11.019 10.174 16.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.141 4.141 3 C 0.098 3.902 4 H 0.014 0.986 5 C -0.671 4.671 6 H 0.051 0.949 7 C -0.223 4.223 8 N -0.565 5.565 9 Si 0.930 3.070 10 H -0.204 1.204 11 H -0.201 1.201 12 H -0.205 1.205 13 N -0.299 5.299 14 C -0.009 4.009 15 H 0.020 0.980 16 C -0.139 4.139 17 C -0.147 4.147 18 C -0.162 4.162 19 C -0.147 4.147 20 C -0.181 4.181 21 C 0.061 3.939 22 H 0.093 0.907 23 O -0.386 6.386 24 H 0.082 0.918 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.159 0.841 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.054 0.946 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.054 0.946 41 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -5.521 10.056 8.589 14.331 hybrid contribution -0.006 0.722 0.809 1.085 sum -5.527 10.778 9.398 15.331 Atomic orbital electron populations 1.21576 0.95311 1.00592 1.00877 1.21404 0.95554 0.98333 0.98811 1.19061 0.91899 0.91181 0.88105 0.98569 1.22939 0.94217 1.46393 1.03596 0.94877 1.27015 1.10222 0.93250 0.91787 1.70880 1.07739 1.48152 1.29722 0.83073 0.70478 0.77295 0.76195 1.20422 1.20106 1.20481 1.60792 1.54799 1.06716 1.07555 1.21160 0.96110 0.89252 0.94397 0.98020 1.21871 0.96554 0.97481 0.97978 1.21324 0.98083 0.92223 1.03103 1.21413 0.97691 0.99551 0.97550 1.20401 1.00473 0.97913 0.95910 1.21159 0.99098 0.95551 1.02321 1.21525 0.95220 0.88552 0.88616 0.90737 1.86432 1.80621 1.47630 1.23962 0.91788 0.94792 0.92876 0.95146 0.94403 0.93024 0.84112 0.95555 0.91688 0.90115 0.91295 0.90014 0.94622 0.89937 0.90786 0.89572 0.94586 0.75836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.14 9.85 71.98 0.71 -4.44 16 2 C -0.10 -5.07 5.33 30.60 0.16 -4.90 16 3 C 0.21 10.88 1.40 44.17 0.06 10.94 16 4 H 0.00 -0.21 5.88 -2.39 -0.01 -0.22 16 5 C -0.63 -37.02 8.18 25.60 0.21 -36.81 16 6 H 0.03 1.99 7.72 -2.91 -0.02 1.96 16 7 C -0.02 -1.35 5.13 84.66 0.43 -0.92 16 8 N -0.93 -57.65 12.99 21.45 0.28 -57.37 16 9 Si 1.11 52.51 29.92 68.60 2.05 54.56 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 N -0.67 -30.02 5.32 -475.66 -2.53 -32.55 16 14 C 0.10 3.98 1.86 44.46 0.08 4.06 16 15 H 0.00 0.08 6.19 -2.38 -0.01 0.07 16 16 C -0.10 -3.50 4.98 31.31 0.16 -3.35 16 17 C -0.11 -2.75 5.31 30.13 0.16 -2.59 16 18 C -0.12 -3.05 5.60 30.20 0.17 -2.88 16 19 C -0.11 -2.25 5.26 28.74 0.15 -2.10 16 20 C -0.14 -3.60 4.94 28.74 0.14 -3.46 16 21 C 0.12 3.56 3.04 30.19 0.09 3.65 16 22 H 0.07 1.92 6.98 -2.39 -0.02 1.91 16 23 O -0.58 -17.67 11.23 -148.98 -1.67 -19.35 16 24 H 0.06 2.50 7.65 -2.39 -0.02 2.49 16 25 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 27 H 0.03 1.65 6.51 -2.39 -0.02 1.64 16 28 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.26 16.33 6.24 -92.71 -0.58 15.76 16 30 H 0.34 16.05 6.35 -89.70 -0.57 15.48 16 31 H 0.03 1.06 7.19 -2.39 -0.02 1.04 16 32 H 0.06 2.24 8.12 -2.39 -0.02 2.22 16 33 H 0.08 1.68 6.63 -2.39 -0.02 1.66 16 34 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.03 1.12 6.99 -2.39 -0.02 1.10 16 37 H 0.08 1.35 7.47 -2.39 -0.02 1.33 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.09 1.70 8.09 -2.39 -0.02 1.68 16 40 H 0.04 1.14 7.47 -2.39 -0.02 1.12 16 41 H 0.39 7.46 9.06 -74.06 -0.67 6.79 16 Total: -1.00 -68.40 305.06 0.62 -67.78 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: -0.04 Total: 29.71 kcal Atomic # 6 Polarization: -45.32 SS G_CDS: 2.53 Total: -42.79 kcal Atomic # 7 Polarization: -87.67 SS G_CDS: -2.25 Total: -89.92 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -1.67 Total: -19.35 kcal Atomic # 14 Polarization: 52.51 SS G_CDS: 2.05 Total: 54.56 kcal Total: -68.40 0.62 -67.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130738085.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.242 kcal (2) G-P(sol) polarization free energy of solvation -68.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds