Wall clock time and date at job start Mon Mar 30 2020 05:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.45118 * 2 1 4 4 C 1.53030 * 109.46566 * 119.97594 * 2 1 3 5 5 C 1.53121 * 109.27755 * 60.83171 * 4 2 1 6 6 C 1.53120 * 109.15694 * 57.65802 * 5 4 2 7 7 H 1.09001 * 109.53880 * 62.30925 * 6 5 4 8 8 C 1.52999 * 109.50084 * 182.40247 * 6 5 4 9 9 O 1.42898 * 109.47565 * 294.80204 * 8 6 5 10 10 C 1.53030 * 109.28052 * 302.34176 * 6 5 4 11 11 N 1.46845 * 109.52191 * 59.17775 * 10 6 5 12 12 C 1.46900 * 111.00011 * 174.16256 * 11 10 6 13 13 C 1.53008 * 109.47118 * 176.06423 * 12 11 10 14 14 C 1.52998 * 109.46969 * 174.43021 * 13 12 11 15 15 C 1.50705 * 109.47017 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99758 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99810 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00469 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99660 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47237 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47104 * 119.99968 * 19 17 15 22 22 H 1.48505 * 109.46943 * 239.99695 * 19 17 15 23 23 H 1.09001 * 109.47384 * 184.39880 * 1 2 3 24 24 H 1.09012 * 109.46754 * 304.39733 * 1 2 3 25 25 H 1.08995 * 109.47721 * 64.39188 * 1 2 3 26 26 H 1.09001 * 109.50566 * 300.89326 * 4 2 1 27 27 H 1.08999 * 109.54047 * 180.79187 * 4 2 1 28 28 H 1.08993 * 109.52495 * 297.75186 * 5 4 2 29 29 H 1.09006 * 109.57628 * 177.58923 * 5 4 2 30 30 H 1.08999 * 109.47095 * 54.80380 * 8 6 5 31 31 H 1.09003 * 109.46988 * 174.80213 * 8 6 5 32 32 H 0.96694 * 114.00828 * 179.97438 * 9 8 6 33 33 H 1.09002 * 109.46426 * 299.17053 * 10 6 5 34 34 H 1.08996 * 109.45758 * 179.19355 * 10 6 5 35 35 H 1.09007 * 109.47338 * 296.06012 * 12 11 10 36 36 H 1.08993 * 109.47374 * 56.06446 * 12 11 10 37 37 H 1.08994 * 109.47020 * 294.42881 * 13 12 11 38 38 H 1.09002 * 109.47279 * 54.43071 * 13 12 11 39 39 H 1.09006 * 109.47435 * 299.99610 * 14 13 12 40 40 H 1.08998 * 109.47688 * 59.99538 * 14 13 12 41 41 H 0.97001 * 120.00467 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0400 -0.7209 1.2498 5 6 1.5443 -2.1696 1.2355 6 6 2.0269 -2.8531 -0.0469 7 1 3.1166 -2.8757 -0.0600 8 6 1.4858 -4.2833 -0.0980 9 8 2.0539 -5.0460 0.9685 10 6 1.5173 -2.0704 -1.2592 11 7 2.0192 -0.6917 -1.1994 12 6 1.6649 0.0507 -2.4165 13 6 2.1173 1.5056 -2.2763 14 6 1.8747 2.2443 -3.5940 15 6 2.3196 3.6775 -3.4557 16 1 2.7336 4.0266 -2.5213 17 6 2.1982 4.5430 -4.5221 18 7 1.6945 4.1178 -5.6601 19 14 2.7491 6.3197 -4.3504 20 1 3.2752 6.5446 -2.9801 21 1 3.8153 6.6055 -5.3437 22 1 1.5940 7.2215 -4.5908 23 1 -0.3634 -1.0246 0.0788 24 1 -0.3633 0.5806 0.8481 25 1 -0.3634 0.4441 -0.9266 26 1 1.6639 -0.2164 2.1399 27 1 3.1299 -0.7093 1.2582 28 1 0.4549 -2.1821 1.2671 29 1 1.9400 -2.6996 2.1019 30 1 0.4009 -4.2653 0.0059 31 1 1.7519 -4.7385 -1.0521 32 1 1.7545 -5.9650 0.9979 33 1 0.4274 -2.0607 -1.2532 34 1 1.8712 -2.5465 -2.1736 35 1 2.1599 -0.4025 -3.2756 36 1 0.5850 0.0183 -2.5606 37 1 1.5500 1.9873 -1.4800 38 1 3.1797 1.5341 -2.0341 39 1 2.4420 1.7626 -4.3905 40 1 0.8123 2.2158 -3.8363 41 1 1.6094 4.7266 -6.4104 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135751449.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:01 Heat of formation + Delta-G solvation = -72.772901 kcal Electronic energy + Delta-G solvation = -17997.549690 eV Core-core repulsion = 15297.287194 eV Total energy + Delta-G solvation = -2700.262495 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 4.19 seconds Orbital eigenvalues (eV) -39.81681 -37.08227 -34.67857 -32.97297 -32.18242 -30.79722 -27.95963 -26.62633 -24.96066 -23.79917 -22.39203 -21.33501 -19.69929 -18.41105 -17.39539 -16.42552 -15.80048 -15.34457 -15.20218 -14.69531 -14.42087 -13.96600 -13.36340 -13.29394 -12.98645 -12.59316 -12.54276 -12.27335 -11.93912 -11.56406 -11.38884 -11.32068 -10.96824 -10.83384 -10.65547 -10.51756 -10.40903 -10.28225 -10.07131 -9.99271 -9.54737 -9.29161 -9.00084 -8.31983 -7.93243 -5.97185 -3.99003 3.32955 3.40316 3.44900 3.85412 4.38335 4.49372 4.68510 4.84499 4.95506 5.17072 5.25017 5.33385 5.37941 5.38823 5.46740 5.59068 5.64697 5.67428 5.77248 5.85001 5.87548 5.96636 6.06696 6.15850 6.17610 6.26370 6.36652 6.37960 6.56788 6.74762 6.85281 7.15856 7.39105 7.48405 7.49201 7.71663 7.86944 8.03507 8.46994 9.08433 9.64963 11.14325 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.050009 B = 0.004243 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.770393 B = 6596.897783 C = 6849.989324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.074 3.926 3 H 0.094 0.906 4 C -0.111 4.111 5 C -0.110 4.110 6 C -0.084 4.084 7 H 0.084 0.916 8 C 0.081 3.919 9 O -0.572 6.572 10 C 0.059 3.941 11 N -0.530 5.530 12 C 0.056 3.944 13 C -0.108 4.108 14 C 0.022 3.978 15 C -0.517 4.517 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.285 1.285 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.043 0.957 31 H 0.045 0.955 32 H 0.376 0.624 33 H 0.035 0.965 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.029 0.971 37 H 0.048 0.952 38 H 0.056 0.944 39 H 0.016 0.984 40 H 0.013 0.987 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.486 -15.898 12.167 20.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.034 4.034 3 H 0.111 0.889 4 C -0.149 4.149 5 C -0.148 4.148 6 C -0.102 4.102 7 H 0.103 0.897 8 C 0.003 3.997 9 O -0.377 6.377 10 C -0.069 4.069 11 N -0.254 5.254 12 C -0.071 4.071 13 C -0.146 4.146 14 C -0.016 4.016 15 C -0.555 4.555 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.211 1.211 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.222 0.778 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.047 0.953 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.034 0.966 40 H 0.031 0.969 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.716 -15.281 12.133 19.587 hybrid contribution -1.004 0.498 -0.336 1.170 sum -2.720 -14.783 11.797 19.107 Atomic orbital electron populations 1.22490 0.98048 1.01601 1.02474 1.21769 0.92547 0.99115 0.90013 0.88853 1.21604 1.01417 0.95105 0.96801 1.21577 1.00196 0.95660 0.97350 1.21136 1.01984 0.91698 0.95425 0.89723 1.22194 0.96214 0.92099 0.89206 1.86485 1.71990 1.26511 1.52692 1.21966 0.97416 0.90130 0.97432 1.62176 1.59224 1.01143 1.02833 1.22285 0.98047 0.95872 0.90917 1.21724 1.00459 0.91624 1.00811 1.19075 0.96831 0.94497 0.91175 1.21293 1.40897 0.95284 0.98030 0.92660 1.25025 0.95420 0.98701 0.95383 1.69975 1.45709 1.35362 1.02590 0.86555 0.78327 0.85119 0.78127 1.19722 1.21022 1.21083 0.92597 0.92439 0.92038 0.91845 0.91242 0.92403 0.91608 0.93913 0.93631 0.77764 0.94687 0.91037 0.91162 0.95300 0.93347 0.92518 0.96575 0.96872 0.93126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.49 8.25 37.16 0.31 -2.19 16 2 C 0.07 1.05 2.50 -67.73 -0.17 0.89 16 3 H 0.09 1.48 5.97 -51.93 -0.31 1.17 16 4 C -0.11 -1.37 5.61 -26.65 -0.15 -1.52 16 5 C -0.11 -1.26 4.85 -26.61 -0.13 -1.39 16 6 C -0.08 -0.97 2.59 -90.54 -0.23 -1.20 16 7 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 8 C 0.08 0.77 6.43 37.16 0.24 1.01 16 9 O -0.57 -5.49 13.25 -35.23 -0.47 -5.95 16 10 C 0.06 0.76 4.45 -3.84 -0.02 0.74 16 11 N -0.53 -8.13 4.71 -226.70 -1.07 -9.19 16 12 C 0.06 0.99 4.65 -3.82 -0.02 0.97 16 13 C -0.11 -2.28 4.44 -26.73 -0.12 -2.39 16 14 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 15 C -0.52 -14.85 9.11 -34.44 -0.31 -15.17 16 16 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.27 13.29 55.43 0.74 -26.54 16 19 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H 0.06 0.68 4.82 -51.93 -0.25 0.43 16 24 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16 25 H 0.06 0.92 6.53 -51.93 -0.34 0.58 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.64 6.46 -51.93 -0.34 0.30 16 29 H 0.07 0.76 7.90 -51.93 -0.41 0.35 16 30 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.38 1.83 9.12 45.56 0.42 2.24 16 33 H 0.04 0.44 6.29 -51.93 -0.33 0.11 16 34 H 0.07 0.89 8.12 -51.93 -0.42 0.47 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.03 0.51 6.77 -51.93 -0.35 0.16 16 37 H 0.05 1.00 6.54 -51.93 -0.34 0.66 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 311.40 15.07 4.69 4.69 Total: -1.00 -31.28 311.40 -8.40 -39.69 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -6.44 Total: -1.28 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -0.84 Total: -18.32 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: -0.33 Total: -35.73 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -0.47 Total: -5.95 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.28 -8.40 -39.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135751449.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.085 kcal (2) G-P(sol) polarization free energy of solvation -31.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.19 seconds