Wall clock time and date at job start Mon Mar 30 2020 05:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.45118 * 2 1 4 4 C 1.53030 * 109.46566 * 119.97594 * 2 1 3 5 5 C 1.53121 * 109.27755 * 60.83171 * 4 2 1 6 6 C 1.53120 * 109.15694 * 57.65802 * 5 4 2 7 7 H 1.09001 * 109.53880 * 62.30925 * 6 5 4 8 8 C 1.52999 * 109.50084 * 182.40247 * 6 5 4 9 9 O 1.42898 * 109.47565 * 294.80204 * 8 6 5 10 10 C 1.53030 * 109.28052 * 302.34176 * 6 5 4 11 11 N 1.46845 * 109.52191 * 59.17775 * 10 6 5 12 12 C 1.46900 * 111.00011 * 174.16256 * 11 10 6 13 13 C 1.53008 * 109.47118 * 176.06423 * 12 11 10 14 14 C 1.52998 * 109.46969 * 174.43021 * 13 12 11 15 15 C 1.50705 * 109.47017 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99758 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99810 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00469 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99660 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47237 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47104 * 119.99968 * 19 17 15 22 22 H 1.48505 * 109.46943 * 239.99695 * 19 17 15 23 23 H 1.09001 * 109.47384 * 184.39880 * 1 2 3 24 24 H 1.09012 * 109.46754 * 304.39733 * 1 2 3 25 25 H 1.08995 * 109.47721 * 64.39188 * 1 2 3 26 26 H 1.09001 * 109.50566 * 300.89326 * 4 2 1 27 27 H 1.08999 * 109.54047 * 180.79187 * 4 2 1 28 28 H 1.08993 * 109.52495 * 297.75186 * 5 4 2 29 29 H 1.09006 * 109.57628 * 177.58923 * 5 4 2 30 30 H 1.08999 * 109.47095 * 54.80380 * 8 6 5 31 31 H 1.09003 * 109.46988 * 174.80213 * 8 6 5 32 32 H 0.96694 * 114.00828 * 179.97438 * 9 8 6 33 33 H 1.09002 * 109.46426 * 299.17053 * 10 6 5 34 34 H 1.08996 * 109.45758 * 179.19355 * 10 6 5 35 35 H 1.09007 * 109.47338 * 296.06012 * 12 11 10 36 36 H 1.08993 * 109.47374 * 56.06446 * 12 11 10 37 37 H 1.08994 * 109.47020 * 294.42881 * 13 12 11 38 38 H 1.09002 * 109.47279 * 54.43071 * 13 12 11 39 39 H 1.09006 * 109.47435 * 299.99610 * 14 13 12 40 40 H 1.08998 * 109.47688 * 59.99538 * 14 13 12 41 41 H 0.97001 * 120.00467 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0400 -0.7209 1.2498 5 6 1.5443 -2.1696 1.2355 6 6 2.0269 -2.8531 -0.0469 7 1 3.1166 -2.8757 -0.0600 8 6 1.4858 -4.2833 -0.0980 9 8 2.0539 -5.0460 0.9685 10 6 1.5173 -2.0704 -1.2592 11 7 2.0192 -0.6917 -1.1994 12 6 1.6649 0.0507 -2.4165 13 6 2.1173 1.5056 -2.2763 14 6 1.8747 2.2443 -3.5940 15 6 2.3196 3.6775 -3.4557 16 1 2.7336 4.0266 -2.5213 17 6 2.1982 4.5430 -4.5221 18 7 1.6945 4.1178 -5.6601 19 14 2.7491 6.3197 -4.3504 20 1 3.2752 6.5446 -2.9801 21 1 3.8153 6.6055 -5.3437 22 1 1.5940 7.2215 -4.5908 23 1 -0.3634 -1.0246 0.0788 24 1 -0.3633 0.5806 0.8481 25 1 -0.3634 0.4441 -0.9266 26 1 1.6639 -0.2164 2.1399 27 1 3.1299 -0.7093 1.2582 28 1 0.4549 -2.1821 1.2671 29 1 1.9400 -2.6996 2.1019 30 1 0.4009 -4.2653 0.0059 31 1 1.7519 -4.7385 -1.0521 32 1 1.7545 -5.9650 0.9979 33 1 0.4274 -2.0607 -1.2532 34 1 1.8712 -2.5465 -2.1736 35 1 2.1599 -0.4025 -3.2756 36 1 0.5850 0.0183 -2.5606 37 1 1.5500 1.9873 -1.4800 38 1 3.1797 1.5341 -2.0341 39 1 2.4420 1.7626 -4.3905 40 1 0.8123 2.2158 -3.8363 41 1 1.6094 4.7266 -6.4104 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135751449.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:58 Heat of formation + Delta-G solvation = -94.825034 kcal Electronic energy + Delta-G solvation = -17998.505942 eV Core-core repulsion = 15297.287194 eV Total energy + Delta-G solvation = -2701.218748 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 4.89 seconds Orbital eigenvalues (eV) -40.91282 -37.91546 -36.24083 -34.72657 -33.21902 -32.53506 -29.05118 -28.32850 -25.95398 -25.37755 -23.60783 -22.84240 -21.07931 -19.52371 -18.48653 -18.13105 -17.14326 -16.66802 -16.44219 -16.06154 -15.60577 -15.28947 -14.72885 -14.50828 -14.17652 -13.95796 -13.71557 -13.49516 -13.41596 -13.09078 -13.01972 -12.68875 -12.50847 -12.27875 -12.16069 -11.93476 -11.62735 -11.45781 -11.39028 -11.24830 -11.10046 -10.89473 -10.76815 -10.55282 -9.14918 -8.20381 -6.31257 1.39590 1.39963 1.53579 2.40675 2.85930 3.12768 3.50343 3.75697 3.89893 4.00194 4.19446 4.25888 4.29199 4.32902 4.45965 4.56270 4.57531 4.62756 4.63755 4.70859 4.71937 4.89748 4.91244 4.93841 5.07200 5.10546 5.18127 5.19444 5.22690 5.26738 5.44167 5.51177 5.57526 5.74365 5.85511 6.16121 6.27103 6.30372 6.85522 6.95863 7.37974 8.91796 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.050009 B = 0.004243 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.770393 B = 6596.897783 C = 6849.989324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.070 3.930 3 H 0.073 0.927 4 C -0.107 4.107 5 C -0.104 4.104 6 C -0.081 4.081 7 H 0.067 0.933 8 C 0.086 3.914 9 O -0.590 6.590 10 C 0.059 3.941 11 N -0.539 5.539 12 C 0.068 3.932 13 C -0.091 4.091 14 C 0.026 3.974 15 C -0.541 4.541 16 H 0.058 0.942 17 C -0.001 4.001 18 N -0.934 5.934 19 Si 0.965 3.035 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.277 1.277 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.040 0.960 26 H 0.079 0.921 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.397 0.603 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.029 0.971 37 H 0.051 0.949 38 H 0.049 0.951 39 H -0.009 1.009 40 H -0.009 1.009 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.724 -16.338 13.581 21.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.038 4.038 3 H 0.091 0.909 4 C -0.144 4.144 5 C -0.142 4.142 6 C -0.100 4.100 7 H 0.085 0.915 8 C 0.007 3.993 9 O -0.398 6.398 10 C -0.068 4.068 11 N -0.263 5.263 12 C -0.059 4.059 13 C -0.129 4.129 14 C -0.011 4.011 15 C -0.579 4.579 16 H 0.076 0.924 17 C -0.198 4.198 18 N -0.574 5.574 19 Si 0.789 3.211 20 H -0.187 1.187 21 H -0.203 1.203 22 H -0.203 1.203 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.059 0.941 26 H 0.097 0.903 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.246 0.754 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.047 0.953 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.010 0.990 40 H 0.009 0.991 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.957 -15.752 13.566 20.880 hybrid contribution -0.927 0.587 -0.774 1.342 sum -2.884 -15.165 12.792 20.048 Atomic orbital electron populations 1.22425 0.97092 1.02527 1.01937 1.21801 0.93329 0.98263 0.90414 0.90926 1.21570 1.00837 0.95821 0.96213 1.21534 1.00640 0.94739 0.97270 1.21079 1.00929 0.93225 0.94792 0.91498 1.22095 0.96745 0.90708 0.89710 1.86424 1.72460 1.28232 1.52663 1.22017 0.97834 0.88568 0.98414 1.62130 1.59854 1.02236 1.02035 1.21991 0.97768 0.93992 0.92182 1.21450 1.00086 0.93444 0.97875 1.18969 0.94750 0.94356 0.93047 1.21707 1.41211 0.96642 0.98362 0.92396 1.25979 0.95265 1.03698 0.94899 1.70100 1.46588 1.37248 1.03461 0.85399 0.78077 0.79000 0.78579 1.18659 1.20301 1.20256 0.91179 0.91163 0.94080 0.90290 0.92199 0.91489 0.91362 0.92553 0.92725 0.75369 0.93921 0.90793 0.91728 0.95313 0.93005 0.93199 0.99038 0.99105 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.56 8.25 71.98 0.59 -3.96 16 2 C 0.07 1.94 2.50 44.94 0.11 2.06 16 3 H 0.07 2.30 5.97 -2.39 -0.01 2.28 16 4 C -0.11 -2.45 5.61 30.64 0.17 -2.28 16 5 C -0.10 -2.15 4.85 30.67 0.15 -2.00 16 6 C -0.08 -1.74 2.59 -10.74 -0.03 -1.77 16 7 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 8 C 0.09 1.40 6.43 71.98 0.46 1.86 16 9 O -0.59 -9.84 13.25 -148.98 -1.97 -11.81 16 10 C 0.06 1.44 4.45 86.32 0.38 1.83 16 11 N -0.54 -16.25 4.71 -871.14 -4.10 -20.36 16 12 C 0.07 2.44 4.65 86.31 0.40 2.85 16 13 C -0.09 -3.90 4.44 30.60 0.14 -3.76 16 14 C 0.03 1.43 4.97 29.85 0.15 1.58 16 15 C -0.54 -31.63 9.11 25.60 0.23 -31.40 16 16 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 17 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 18 N -0.93 -57.67 13.29 21.44 0.28 -57.39 16 19 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 20 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 H 0.07 1.55 4.82 -2.39 -0.01 1.54 16 24 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 25 H 0.04 1.19 6.53 -2.39 -0.02 1.18 16 26 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.07 1.27 6.46 -2.39 -0.02 1.26 16 29 H 0.07 1.41 7.90 -2.38 -0.02 1.39 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.40 2.80 9.12 -74.06 -0.68 2.12 16 33 H 0.04 0.99 6.29 -2.39 -0.02 0.97 16 34 H 0.07 1.75 8.12 -2.39 -0.02 1.73 16 35 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 36 H 0.03 1.03 6.77 -2.39 -0.02 1.01 16 37 H 0.05 2.17 6.54 -2.39 -0.02 2.16 16 38 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 39 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 40 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 41 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -67.07 311.40 -0.22 -67.29 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 0.32 Total: 9.82 kcal Atomic # 6 Polarization: -37.82 SS G_CDS: 3.23 Total: -34.59 kcal Atomic # 7 Polarization: -73.93 SS G_CDS: -3.82 Total: -77.75 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -1.97 Total: -11.81 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -67.07 -0.22 -67.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135751449.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.534 kcal (2) G-P(sol) polarization free energy of solvation -67.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.89 seconds