Wall clock time and date at job start Mon Mar 30 2020 04:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46749 * 2 1 4 4 N 1.46900 * 109.47475 * 119.99459 * 2 1 3 5 5 C 1.46905 * 110.99791 * 94.29079 * 4 2 1 6 6 C 1.50701 * 109.46561 * 66.05054 * 5 4 2 7 7 H 1.07995 * 120.00253 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99794 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99885 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99965 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47166 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47273 * 120.00164 * 10 8 6 13 13 H 1.48498 * 109.46919 * 239.99599 * 10 8 6 14 14 C 1.46903 * 110.99956 * 330.34221 * 4 2 1 15 15 C 1.52998 * 109.47081 * 296.81991 * 14 4 2 16 16 C 1.53006 * 109.47044 * 179.97438 * 15 14 4 17 17 C 1.53000 * 109.46803 * 60.00329 * 16 15 14 18 18 O 1.42895 * 109.46688 * 179.97438 * 17 16 15 19 19 C 1.53005 * 109.46939 * 299.99419 * 17 16 15 20 20 C 1.52997 * 109.46798 * 60.00572 * 19 17 16 21 21 H 1.08998 * 109.47241 * 306.56103 * 1 2 3 22 22 H 1.08993 * 109.47122 * 66.56467 * 1 2 3 23 23 H 1.08998 * 109.46681 * 186.56236 * 1 2 3 24 24 H 1.08999 * 109.47572 * 239.99981 * 2 1 3 25 25 H 1.09001 * 109.47081 * 175.87610 * 3 2 1 26 26 H 1.09002 * 109.46963 * 295.87577 * 3 2 1 27 27 H 1.09000 * 109.47277 * 55.87415 * 3 2 1 28 28 H 1.08997 * 109.47089 * 186.04714 * 5 4 2 29 29 H 1.08995 * 109.47189 * 306.05457 * 5 4 2 30 30 H 0.97000 * 120.00479 * 179.97438 * 9 8 6 31 31 H 1.09005 * 109.46892 * 56.81820 * 14 4 2 32 32 H 1.08993 * 109.47159 * 300.00103 * 15 14 4 33 33 H 1.08999 * 109.47039 * 60.00376 * 15 14 4 34 34 H 1.08996 * 109.47157 * 299.99678 * 16 15 14 35 35 H 1.09006 * 109.46859 * 179.97438 * 16 15 14 36 36 H 1.08993 * 109.47297 * 59.99776 * 17 16 15 37 37 H 0.96707 * 114.00337 * 299.99503 * 18 17 16 38 38 H 1.08996 * 109.47139 * 300.00723 * 19 17 16 39 39 H 1.08999 * 109.46926 * 179.97438 * 19 17 16 40 40 H 1.09004 * 109.47387 * 179.97438 * 20 19 17 41 41 H 1.09005 * 109.47744 * 59.99628 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0198 -0.6924 1.1995 5 6 2.2920 -2.1079 0.9160 6 6 3.4410 -2.2139 -0.0535 7 1 3.9206 -1.3194 -0.4223 8 6 3.8798 -3.4530 -0.4694 9 7 3.2960 -4.5424 -0.0198 10 14 5.3044 -3.5846 -1.6705 11 1 5.7834 -2.2235 -2.0212 12 1 6.4103 -4.3531 -1.0446 13 1 4.8517 -4.2819 -2.9009 14 6 1.0717 -0.5514 2.3127 15 6 0.9494 0.9251 2.6946 16 6 -0.0385 1.0720 3.8536 17 6 0.4656 0.2739 5.0577 18 8 -0.4568 0.4116 6.1403 19 6 0.5878 -1.2027 4.6758 20 6 1.5757 -1.3495 3.5168 21 1 -0.3633 0.6121 0.8254 22 1 -0.3633 0.4087 -0.9428 23 1 -0.3632 -1.0209 0.1174 24 1 1.8934 -0.5138 -0.8899 25 1 3.1275 1.4435 0.0739 26 1 1.7382 1.9346 -0.9247 27 1 1.6175 1.9773 0.8507 28 1 2.5498 -2.6209 1.8424 29 1 1.4054 -2.5682 0.4802 30 1 3.6045 -5.4142 -0.3127 31 1 0.0957 -0.9301 2.0089 32 1 1.9253 1.3038 2.9983 33 1 0.5899 1.4936 1.8369 34 1 -1.0143 0.6935 3.5495 35 1 -0.1253 2.1239 4.1260 36 1 1.4414 0.6525 5.3618 37 1 -0.5836 1.3237 6.4355 38 1 -0.3880 -1.5812 4.3716 39 1 0.9474 -1.7712 5.5334 40 1 1.6632 -2.4015 3.2449 41 1 2.5516 -0.9709 3.8208 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157294064.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:36 Heat of formation + Delta-G solvation = -75.448907 kcal Electronic energy + Delta-G solvation = -18824.119153 eV Core-core repulsion = 16123.740617 eV Total energy + Delta-G solvation = -2700.378536 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.89458 -38.49579 -35.68787 -34.94482 -32.95660 -31.28699 -29.89540 -28.04037 -27.52866 -24.54756 -23.22690 -22.86666 -20.95961 -20.17151 -18.38350 -18.09939 -17.06904 -16.57306 -16.31146 -15.79938 -15.43302 -14.96344 -14.79492 -14.33998 -14.16619 -13.78855 -13.41309 -13.39177 -13.22377 -12.85361 -12.80089 -12.59414 -12.56075 -12.27174 -12.16993 -12.02482 -11.91629 -11.79630 -11.57458 -11.26909 -11.02105 -10.91955 -10.59897 -10.38729 -8.85237 -8.18594 -6.27360 1.39195 1.39893 1.53338 2.40280 3.13314 3.16121 3.45639 3.75158 3.82132 4.16520 4.22174 4.28453 4.30199 4.37282 4.47427 4.51108 4.57723 4.60891 4.76052 4.84494 4.90532 5.00900 5.04305 5.07018 5.07878 5.09717 5.23534 5.25885 5.27270 5.31221 5.37002 5.47444 5.63340 5.65488 5.71894 6.13584 6.49249 6.78922 6.91526 6.96633 7.41817 8.92311 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029170 B = 0.006696 C = 0.005860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.656105 B = 4180.632794 C = 4776.790915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.072 3.928 3 C -0.136 4.136 4 N -0.531 5.531 5 C 0.204 3.796 6 C -0.516 4.516 7 H 0.060 0.940 8 C 0.000 4.000 9 N -0.936 5.936 10 Si 0.966 3.034 11 H -0.263 1.263 12 H -0.279 1.279 13 H -0.280 1.280 14 C 0.080 3.920 15 C -0.111 4.111 16 C -0.140 4.140 17 C 0.110 3.890 18 O -0.584 6.584 19 C -0.105 4.105 20 C -0.109 4.109 21 H 0.081 0.919 22 H 0.068 0.932 23 H 0.025 0.975 24 H 0.050 0.950 25 H 0.043 0.957 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.016 0.984 29 H -0.049 1.049 30 H 0.263 0.737 31 H 0.027 0.973 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.394 0.606 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.043 0.957 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.434 13.925 6.741 16.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.037 4.037 3 C -0.193 4.193 4 N -0.255 5.255 5 C 0.078 3.922 6 C -0.554 4.554 7 H 0.078 0.922 8 C -0.198 4.198 9 N -0.577 5.577 10 Si 0.791 3.209 11 H -0.187 1.187 12 H -0.205 1.205 13 H -0.206 1.206 14 C -0.028 4.028 15 C -0.148 4.148 16 C -0.178 4.178 17 C 0.052 3.948 18 O -0.393 6.393 19 C -0.143 4.143 20 C -0.146 4.146 21 H 0.100 0.900 22 H 0.087 0.913 23 H 0.044 0.956 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.034 0.966 29 H -0.031 1.031 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.244 0.756 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.006 13.323 6.796 16.117 hybrid contribution 0.039 -0.893 -0.951 1.305 sum -5.966 12.430 5.845 14.976 Atomic orbital electron populations 1.22466 0.96852 1.00496 1.03154 1.21658 0.93028 0.96086 0.92941 1.22026 1.00932 0.94015 1.02357 1.62315 1.43388 1.13889 1.05871 1.19463 0.93231 0.84511 0.95020 1.21514 1.16058 0.92272 1.25567 0.92173 1.25884 0.99858 0.95383 0.98630 1.70098 1.43357 0.98189 1.46089 0.85386 0.78805 0.78394 0.78357 1.18732 1.20470 1.20588 1.21731 0.93319 0.96904 0.90895 1.21905 1.00044 0.94274 0.98576 1.22212 0.99083 1.01408 0.95119 1.21736 0.91958 0.94953 0.86181 1.86469 1.65942 1.34479 1.52404 1.21397 0.99171 0.96310 0.97441 1.21549 0.99032 0.99502 0.94559 0.90005 0.91311 0.95596 0.93165 0.93736 0.91707 0.90221 0.96591 1.03120 0.92869 0.95510 0.91201 0.89209 0.91936 0.88799 0.91902 0.75565 0.92422 0.91508 0.93831 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.52 7.81 71.98 0.56 -4.96 16 2 C 0.07 2.71 2.57 44.92 0.12 2.82 16 3 C -0.14 -4.05 9.12 71.98 0.66 -3.40 16 4 N -0.53 -22.59 4.26 -850.38 -3.62 -26.22 16 5 C 0.20 11.01 4.36 85.56 0.37 11.38 16 6 C -0.52 -29.65 8.12 25.60 0.21 -29.45 16 7 H 0.06 3.41 7.54 -2.91 -0.02 3.39 16 8 C 0.00 -0.01 5.46 84.66 0.46 0.46 16 9 N -0.94 -57.46 13.29 21.45 0.28 -57.17 16 10 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 11 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 14 C 0.08 2.81 1.42 44.91 0.06 2.87 16 15 C -0.11 -2.87 3.60 30.60 0.11 -2.76 16 16 C -0.14 -2.91 5.54 30.60 0.17 -2.74 16 17 C 0.11 2.55 3.47 30.60 0.11 2.66 16 18 O -0.58 -12.60 13.32 -148.98 -1.98 -14.58 16 19 C -0.11 -3.07 5.57 30.59 0.17 -2.90 16 20 C -0.11 -3.86 4.76 30.59 0.15 -3.72 16 21 H 0.08 2.23 4.87 -2.39 -0.01 2.22 16 22 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.02 0.95 7.41 -2.39 -0.02 0.93 16 24 H 0.05 2.27 6.68 -2.39 -0.02 2.25 16 25 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.08 2.00 4.73 -2.39 -0.01 1.99 16 28 H 0.02 0.93 5.63 -2.39 -0.01 0.92 16 29 H -0.05 -2.93 8.04 -2.39 -0.02 -2.95 16 30 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 31 H 0.03 1.01 6.00 -2.38 -0.01 0.99 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.09 2.15 3.47 -2.39 -0.01 2.14 16 34 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.39 4.55 9.08 -74.05 -0.67 3.87 16 38 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.04 1.84 6.11 -2.38 -0.01 1.83 16 41 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 Total: -1.00 -67.17 302.83 0.18 -66.99 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.33 Total: 13.58 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: 3.14 Total: -29.73 kcal Atomic # 7 Polarization: -80.05 SS G_CDS: -3.34 Total: -83.39 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -1.98 Total: -14.58 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -67.17 0.18 -66.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157294064.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.458 kcal (2) G-P(sol) polarization free energy of solvation -67.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds