Wall clock time and date at job start Mon Mar 30 2020 03:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47342 * 2 1 4 4 C 1.53001 * 109.47349 * 120.00517 * 2 1 3 5 5 O 1.42897 * 109.47160 * 64.99542 * 4 2 1 6 6 C 1.42904 * 113.99774 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.46798 * 180.02562 * 6 5 4 8 8 N 1.46900 * 109.47559 * 65.39846 * 7 6 5 9 9 C 1.46894 * 111.00485 * 182.11310 * 8 7 6 10 10 C 1.52999 * 109.47337 * 185.58950 * 9 8 7 11 11 C 1.50704 * 115.54974 * 302.81614 * 10 9 8 12 12 H 1.07996 * 119.99598 * 273.38001 * 11 10 9 13 13 C 1.37875 * 119.99706 * 93.10131 * 11 10 9 14 14 N 1.31518 * 119.99678 * 183.13543 * 13 11 10 15 15 Si 1.86797 * 120.00272 * 3.13838 * 13 11 10 16 16 H 1.48499 * 109.47061 * 88.72094 * 15 13 11 17 17 H 1.48500 * 109.47347 * 208.71898 * 15 13 11 18 18 H 1.48495 * 109.47090 * 328.72204 * 15 13 11 19 19 C 1.53001 * 117.49891 * 88.48547 * 10 9 8 20 20 C 1.53004 * 117.49851 * 157.14677 * 10 9 8 21 21 H 1.09004 * 109.46946 * 299.99681 * 1 2 3 22 22 H 1.09003 * 109.47153 * 59.99520 * 1 2 3 23 23 H 1.08996 * 109.47465 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46946 * 240.00319 * 2 1 3 25 25 H 1.08995 * 109.46965 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.46936 * 300.00478 * 3 2 1 27 27 H 1.09004 * 109.46840 * 60.00254 * 3 2 1 28 28 H 1.09003 * 109.46651 * 304.99907 * 4 2 1 29 29 H 1.08999 * 109.46995 * 184.99999 * 4 2 1 30 30 H 1.08997 * 109.47063 * 60.00456 * 6 5 4 31 31 H 1.08998 * 109.46741 * 299.99815 * 6 5 4 32 32 H 1.09004 * 109.47448 * 305.39788 * 7 6 5 33 33 H 1.09007 * 109.46847 * 185.39902 * 7 6 5 34 34 H 1.00895 * 111.00156 * 306.07433 * 8 7 6 35 35 H 1.09002 * 109.46754 * 65.58755 * 9 8 7 36 36 H 1.09001 * 109.46891 * 305.59236 * 9 8 7 37 37 H 0.97002 * 119.99964 * 180.02562 * 14 13 11 38 38 H 1.08995 * 117.49765 * 215.00251 * 19 10 9 39 39 H 1.09000 * 117.49905 * 0.02567 * 19 10 9 40 40 H 1.08999 * 117.50037 * 359.97438 * 20 10 9 41 41 H 1.09000 * 117.49673 * 144.96884 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 8 1.6619 -2.0982 1.1919 6 6 2.0914 -2.8662 2.3179 7 6 1.6344 -4.3167 2.1501 8 7 2.3199 -4.9159 0.9972 9 6 1.8678 -6.2957 0.7746 10 6 2.6997 -6.9313 -0.3411 11 6 2.6814 -6.2035 -1.6606 12 1 1.9004 -6.4065 -2.3784 13 6 3.6584 -5.2744 -1.9490 14 7 3.6080 -4.5948 -3.0738 15 14 5.0537 -4.9810 -0.7423 16 1 6.1681 -5.9173 -1.0370 17 1 5.5350 -3.5822 -0.8724 18 1 4.5675 -5.2105 0.6419 19 6 3.9975 -7.6358 0.0591 20 6 2.7828 -8.4586 -0.3778 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6054 -0.2618 2.1369 29 1 3.1263 -0.6444 1.2950 30 1 1.6575 -2.4511 3.2276 31 1 3.1788 -2.8338 2.3863 32 1 0.5572 -4.3415 1.9854 33 1 1.8774 -4.8807 3.0507 34 1 2.1912 -4.3550 0.1685 35 1 0.8165 -6.2915 0.4867 36 1 1.9909 -6.8708 1.6923 37 1 4.2955 -3.9414 -3.2770 38 1 4.8380 -7.5729 -0.6319 39 1 4.2584 -7.6469 1.1174 40 1 2.2452 -9.0106 0.3932 41 1 2.8238 -8.9370 -1.3563 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158886457.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:11 Heat of formation + Delta-G solvation = -32.751885 kcal Electronic energy + Delta-G solvation = -18177.126262 eV Core-core repulsion = 15478.599208 eV Total energy + Delta-G solvation = -2698.527054 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.25889 -37.22124 -35.31691 -33.83730 -31.93019 -29.05893 -27.09043 -25.89798 -25.38941 -24.00219 -21.64273 -21.24329 -20.11079 -18.72915 -16.61023 -16.19986 -15.91312 -15.04309 -14.95556 -14.59952 -14.10037 -13.84626 -13.58072 -12.94455 -12.75517 -12.41142 -12.35571 -12.14889 -11.84922 -11.68885 -11.49729 -11.05513 -10.95025 -10.77935 -10.73980 -10.43633 -10.42823 -10.15586 -9.80879 -9.36574 -9.30956 -8.90521 -8.45236 -8.35774 -7.31377 -5.95155 -4.01221 3.52614 3.62871 3.88823 3.92267 4.70835 4.76754 4.93528 4.98555 5.19966 5.23631 5.36840 5.41764 5.51112 5.56322 5.59376 5.65801 5.74568 5.79024 5.88788 5.89499 6.00756 6.05745 6.13571 6.17676 6.22002 6.31504 6.41531 6.44425 6.48665 6.60670 6.61608 6.85006 7.18411 7.23336 7.47108 7.87509 7.97222 8.34594 8.62644 9.04536 9.69071 11.14855 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023339 B = 0.007264 C = 0.006418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.398442 B = 3853.859826 C = 4361.662510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 C -0.144 4.144 4 C 0.070 3.930 5 O -0.380 6.380 6 C 0.064 3.936 7 C 0.060 3.940 8 N -0.676 5.676 9 C 0.101 3.899 10 C 0.010 3.990 11 C -0.496 4.496 12 H 0.072 0.928 13 C 0.083 3.917 14 N -0.901 5.901 15 Si 0.870 3.130 16 H -0.297 1.297 17 H -0.308 1.308 18 H -0.205 1.205 19 C -0.196 4.196 20 C -0.187 4.187 21 H 0.047 0.953 22 H 0.051 0.949 23 H 0.064 0.936 24 H 0.084 0.916 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.042 0.958 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.029 0.971 33 H 0.075 0.925 34 H 0.363 0.637 35 H 0.022 0.978 36 H 0.045 0.955 37 H 0.262 0.738 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.575 7.588 11.052 13.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 C -0.201 4.201 4 C -0.007 4.007 5 O -0.299 6.299 6 C -0.013 4.013 7 C -0.070 4.070 8 N -0.311 5.311 9 C -0.028 4.028 10 C 0.008 3.992 11 C -0.533 4.533 12 H 0.090 0.910 13 C -0.120 4.120 14 N -0.538 5.538 15 Si 0.699 3.301 16 H -0.225 1.225 17 H -0.236 1.236 18 H -0.127 1.127 19 C -0.233 4.233 20 C -0.225 4.225 21 H 0.066 0.934 22 H 0.071 0.929 23 H 0.083 0.917 24 H 0.103 0.897 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.093 0.907 34 H 0.185 0.815 35 H 0.040 0.960 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.070 7.481 11.164 13.784 hybrid contribution 0.199 0.458 0.276 0.570 sum -2.872 7.938 11.439 14.217 Atomic orbital electron populations 1.21752 0.94722 1.02522 1.00832 1.21118 0.96689 0.95422 0.98601 1.21769 1.01077 0.95461 1.01804 1.22492 0.98289 0.82416 0.97501 1.87924 1.78380 1.19905 1.43708 1.22572 0.99047 0.91643 0.88044 1.21930 0.96375 0.92260 0.96443 1.60686 1.58019 1.03736 1.08624 1.21465 0.96061 0.88998 0.96262 1.19384 0.94493 0.89775 0.95505 1.20241 1.12788 1.21704 0.98606 0.91022 1.24991 0.97780 0.94366 0.94872 1.69933 1.34772 1.24855 1.24235 0.87060 0.81062 0.75205 0.86791 1.22542 1.23576 1.12713 1.22876 0.93246 1.07973 0.99194 1.22880 1.02675 0.96122 1.00854 0.93389 0.92944 0.91679 0.89718 0.92589 0.92115 0.92873 0.94001 0.93646 0.93759 0.92719 0.95289 0.90707 0.81471 0.95967 0.93703 0.92864 0.89947 0.90904 0.91305 0.89771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.09 37.16 0.34 -1.44 16 2 C -0.10 -1.35 3.16 -90.62 -0.29 -1.63 16 3 C -0.14 -1.54 9.19 37.16 0.34 -1.20 16 4 C 0.07 0.98 5.32 37.16 0.20 1.18 16 5 O -0.38 -6.51 9.38 -35.23 -0.33 -6.84 16 6 C 0.06 0.98 6.27 37.16 0.23 1.21 16 7 C 0.06 0.99 6.10 -3.82 -0.02 0.96 16 8 N -0.68 -14.05 3.84 -113.78 -0.44 -14.49 16 9 C 0.10 2.12 5.59 -3.83 -0.02 2.10 16 10 C 0.01 0.23 1.39 -155.66 -0.22 0.01 16 11 C -0.50 -14.03 8.82 -34.44 -0.30 -14.34 16 12 H 0.07 2.23 8.06 -52.49 -0.42 1.81 16 13 C 0.08 2.40 5.06 -17.82 -0.09 2.31 16 14 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 15 Si 0.87 22.36 23.14 -169.99 -3.93 18.43 16 16 H -0.30 -7.75 6.94 56.52 0.39 -7.36 16 17 H -0.31 -8.12 7.11 56.52 0.40 -7.72 16 18 H -0.21 -4.95 5.22 56.52 0.30 -4.65 16 19 C -0.20 -4.36 7.16 -26.69 -0.19 -4.55 16 20 C -0.19 -3.94 9.96 -26.69 -0.27 -4.21 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.94 7.82 -51.93 -0.41 0.53 16 24 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.36 8.58 6.71 -39.29 -0.26 8.31 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 37 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 38 H 0.08 1.97 6.19 -51.93 -0.32 1.65 16 39 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 LS Contribution 322.14 15.07 4.85 4.85 Total: -1.00 -30.60 322.14 -7.21 -37.81 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -7.85 Total: 6.90 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -0.29 Total: -19.59 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.34 Total: -41.57 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.33 Total: -6.84 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -3.93 Total: 18.43 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.60 -7.21 -37.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158886457.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.063 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds