Wall clock time and date at job start Mon Mar 30 2020 04:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47158 * 2 1 4 4 H 1.09003 * 109.47299 * 55.85893 * 3 2 1 5 5 C 1.50700 * 109.47176 * 175.85402 * 3 2 1 6 6 H 1.07997 * 120.00549 * 114.08793 * 5 3 2 7 7 C 1.37886 * 120.00015 * 294.09168 * 5 3 2 8 8 N 1.31512 * 119.99703 * 351.16647 * 7 5 3 9 9 Si 1.86796 * 119.99944 * 171.17518 * 7 5 3 10 10 H 1.48502 * 109.46984 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.46934 * 299.99356 * 9 7 5 12 12 H 1.48492 * 109.47501 * 59.99758 * 9 7 5 13 13 N 1.46902 * 109.47403 * 295.85445 * 3 2 1 14 14 C 1.46907 * 110.99657 * 317.71797 * 13 3 2 15 15 C 1.46896 * 110.99976 * 81.66835 * 13 3 2 16 16 C 1.52998 * 109.47172 * 160.62332 * 15 13 3 17 17 O 1.42899 * 110.01961 * 61.68384 * 16 15 13 18 18 C 1.54268 * 110.03027 * 300.24497 * 16 15 13 19 19 C 1.54897 * 104.19604 * 217.10396 * 18 16 15 20 20 C 1.54886 * 102.74311 * 37.94110 * 19 18 16 21 21 C 1.53869 * 110.03492 * 183.07924 * 16 15 13 22 22 H 1.09002 * 109.46911 * 76.04384 * 1 2 3 23 23 H 1.08995 * 109.47289 * 196.04685 * 1 2 3 24 24 H 1.09003 * 109.46737 * 316.05019 * 1 2 3 25 25 H 1.08999 * 109.47082 * 240.00014 * 2 1 3 26 26 H 1.08998 * 109.47195 * 120.00122 * 2 1 3 27 27 H 0.97004 * 120.00101 * 354.81511 * 8 7 5 28 28 H 1.08996 * 109.47031 * 70.66260 * 14 13 3 29 29 H 1.08995 * 109.47115 * 190.66396 * 14 13 3 30 30 H 1.09007 * 109.46866 * 310.66101 * 14 13 3 31 31 H 1.09001 * 109.47348 * 280.62475 * 15 13 3 32 32 H 1.08999 * 109.47284 * 40.62022 * 15 13 3 33 33 H 0.96700 * 114.00498 * 180.02562 * 17 16 15 34 34 H 1.08997 * 110.48644 * 335.78400 * 18 16 15 35 35 H 1.09006 * 110.48712 * 98.42618 * 18 16 15 36 36 H 1.09005 * 110.75231 * 279.62974 * 19 18 16 37 37 H 1.08998 * 110.75342 * 156.25661 * 19 18 16 38 38 H 1.09002 * 110.48105 * 203.37496 * 20 19 18 39 39 H 1.09000 * 110.48659 * 80.73763 * 20 19 18 40 40 H 1.08999 * 110.03204 * 238.56973 * 21 16 15 41 41 H 1.08998 * 110.03596 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6174 1.9773 0.8506 5 6 3.5435 1.4437 0.1027 6 1 4.1408 1.8052 -0.7212 7 6 4.1566 0.9833 1.2487 8 7 3.4367 0.7070 2.3140 9 14 6.0098 0.7522 1.2881 10 1 6.4179 0.2516 2.6254 11 1 6.4083 -0.2306 0.2485 12 1 6.6766 2.0520 1.0221 13 7 1.6338 2.1055 -1.2464 14 6 1.8132 1.2136 -2.3998 15 6 0.2473 2.5832 -1.1609 16 6 0.0108 3.6558 -2.2259 17 8 0.2031 3.1020 -3.5291 18 6 0.9749 4.8400 -2.0064 19 6 0.1310 6.0884 -2.3650 20 6 -1.2675 5.7277 -1.8055 21 6 -1.4149 4.2203 -2.0981 22 1 -0.3633 0.2479 -0.9974 23 1 -0.3633 -0.9876 0.2841 24 1 -0.3633 0.7399 0.7133 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.4856 0.8977 2.3194 28 1 1.0712 0.4161 -2.3612 29 1 1.6883 1.7818 -3.3214 30 1 2.8134 0.7809 -2.3724 31 1 -0.4351 1.7496 -1.3269 32 1 0.0693 3.0070 -0.1725 33 1 0.0678 3.7335 -4.2488 34 1 1.2960 4.8826 -0.9657 35 1 1.8364 4.7585 -2.6694 36 1 0.0902 6.2298 -3.4451 37 1 0.5268 6.9766 -1.8726 38 1 -2.0425 6.2942 -2.3217 39 1 -1.3085 5.9137 -0.7323 40 1 -1.9599 4.0724 -3.0304 41 1 -1.9385 3.7298 -1.2776 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167163121.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:16 Heat of formation + Delta-G solvation = -57.164555 kcal Electronic energy + Delta-G solvation = -19035.539984 eV Core-core repulsion = 16335.954318 eV Total energy + Delta-G solvation = -2699.585667 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.39528 -37.18412 -34.44659 -32.84828 -30.84749 -29.17078 -28.50064 -26.65597 -25.29855 -23.32307 -21.83336 -20.63775 -19.50773 -19.31096 -16.68802 -16.55976 -15.68499 -15.25311 -14.45402 -13.98312 -13.71873 -13.62159 -13.43569 -13.10974 -12.69410 -12.34542 -11.75798 -11.60638 -11.41032 -11.13584 -11.02266 -10.89299 -10.88796 -10.81734 -10.68604 -10.52937 -10.43059 -10.16923 -10.06704 -9.97144 -9.65517 -9.39940 -8.49539 -8.19606 -7.00834 -6.26356 -3.94435 3.49386 3.50627 3.69327 4.48511 4.55755 4.66070 4.79712 4.98704 5.17543 5.39314 5.46073 5.52703 5.69021 5.72520 5.72982 5.86572 5.92103 5.97247 6.00689 6.11361 6.12114 6.20366 6.27720 6.36421 6.47773 6.50825 6.61032 6.66909 6.74562 6.80265 6.99372 7.11940 7.23317 7.45310 7.96276 8.04796 8.25260 8.47349 8.73074 8.98277 9.73797 11.10021 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028378 B = 0.007042 C = 0.006512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.440564 B = 3975.191805 C = 4298.870045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.154 4.154 3 C 0.204 3.796 4 H 0.024 0.976 5 C -0.574 4.574 6 H 0.055 0.945 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 1.064 2.936 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.517 5.517 14 C 0.035 3.965 15 C 0.061 3.939 16 C 0.136 3.864 17 O -0.548 6.548 18 C -0.131 4.131 19 C -0.132 4.132 20 C -0.124 4.124 21 C -0.152 4.152 22 H 0.050 0.950 23 H 0.036 0.964 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.268 0.732 28 H 0.010 0.990 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.361 0.639 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.829 7.082 -9.057 14.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.193 4.193 3 C 0.097 3.903 4 H 0.042 0.958 5 C -0.613 4.613 6 H 0.073 0.927 7 C -0.185 4.185 8 N -0.552 5.552 9 Si 0.893 3.107 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.216 1.216 13 N -0.240 5.240 14 C -0.113 4.113 15 C -0.068 4.068 16 C 0.095 3.905 17 O -0.353 6.353 18 C -0.168 4.168 19 C -0.170 4.170 20 C -0.162 4.162 21 C -0.190 4.190 22 H 0.068 0.932 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.028 0.972 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.207 0.793 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.133 6.403 -7.804 12.361 hybrid contribution -2.012 0.317 -1.061 2.297 sum -9.145 6.720 -8.865 14.401 Atomic orbital electron populations 1.22188 0.99014 0.99894 1.00265 1.22332 0.92284 1.02673 1.02042 1.19507 0.96302 0.87815 0.86629 0.95792 1.21906 0.90555 1.45421 1.03394 0.92705 1.25715 1.06477 0.94157 0.92177 1.70786 1.09214 1.45658 1.29562 0.83617 0.74851 0.76437 0.75782 1.21016 1.21606 1.21557 1.62159 1.17567 1.39541 1.04687 1.22401 0.99936 0.94729 0.94213 1.22471 0.92325 0.96126 0.95880 1.21978 0.91619 0.93429 0.83494 1.86672 1.92947 1.40697 1.15020 1.22846 0.97882 0.92594 1.03514 1.22594 0.95561 0.98709 1.00122 1.22344 0.97193 0.95550 1.01067 1.22902 0.97910 0.96012 1.02215 0.93167 0.94534 0.93700 0.92991 0.91475 0.92086 0.97171 0.91118 0.92191 0.93974 0.90989 0.79303 0.90221 0.90691 0.92087 0.91706 0.92104 0.91582 0.91363 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 8.29 37.16 0.31 -2.77 16 2 C -0.15 -3.61 4.62 -26.73 -0.12 -3.74 16 3 C 0.20 5.10 1.54 -68.86 -0.11 4.99 16 4 H 0.02 0.66 6.73 -51.93 -0.35 0.31 16 5 C -0.57 -16.10 8.05 -34.44 -0.28 -16.38 16 6 H 0.05 1.58 7.76 -52.49 -0.41 1.17 16 7 C 0.02 0.52 5.18 -17.82 -0.09 0.42 16 8 N -0.92 -27.33 12.84 55.43 0.71 -26.62 16 9 Si 1.06 25.46 29.91 -169.99 -5.08 20.38 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.52 -11.18 4.16 -236.28 -0.98 -12.16 16 14 C 0.04 0.73 7.67 60.07 0.46 1.19 16 15 C 0.06 1.11 2.78 -3.83 -0.01 1.10 16 16 C 0.14 2.03 1.08 -89.51 -0.10 1.94 16 17 O -0.55 -8.09 9.93 -35.23 -0.35 -8.44 16 18 C -0.13 -1.94 5.70 -25.07 -0.14 -2.08 16 19 C -0.13 -1.52 6.91 -24.74 -0.17 -1.69 16 20 C -0.12 -1.36 6.83 -25.08 -0.17 -1.53 16 21 C -0.15 -1.87 6.24 -25.62 -0.16 -2.03 16 22 H 0.05 0.94 4.55 -51.93 -0.24 0.71 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.04 0.87 7.75 -51.93 -0.40 0.46 16 25 H 0.05 1.23 6.21 -51.93 -0.32 0.90 16 26 H 0.07 1.75 6.54 -51.93 -0.34 1.41 16 27 H 0.27 7.98 6.37 -40.82 -0.26 7.72 16 28 H 0.01 0.20 5.52 -51.93 -0.29 -0.08 16 29 H 0.07 1.37 5.64 -51.93 -0.29 1.08 16 30 H 0.06 1.34 7.31 -51.92 -0.38 0.96 16 31 H 0.04 0.78 4.77 -51.93 -0.25 0.54 16 32 H 0.07 1.35 7.58 -51.93 -0.39 0.96 16 33 H 0.36 3.88 9.05 45.56 0.41 4.29 16 34 H 0.08 1.36 7.85 -51.93 -0.41 0.96 16 35 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.77 7.95 -51.93 -0.41 0.35 16 41 H 0.07 0.86 7.67 -51.93 -0.40 0.47 16 LS Contribution 301.07 15.07 4.54 4.54 Total: -1.00 -29.90 301.07 -7.80 -37.70 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.05 Total: 5.18 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: -0.58 Total: -20.57 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: -0.27 Total: -38.78 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -0.35 Total: -8.44 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.08 Total: 20.38 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.90 -7.80 -37.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167163121.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.464 kcal (2) G-P(sol) polarization free energy of solvation -29.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds