Wall clock time and date at job start Mon Mar 30 2020 04:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47158 * 2 1 4 4 H 1.09003 * 109.47299 * 55.85893 * 3 2 1 5 5 C 1.50700 * 109.47176 * 175.85402 * 3 2 1 6 6 H 1.07997 * 120.00549 * 114.08793 * 5 3 2 7 7 C 1.37886 * 120.00015 * 294.09168 * 5 3 2 8 8 N 1.31512 * 119.99703 * 351.16647 * 7 5 3 9 9 Si 1.86796 * 119.99944 * 171.17518 * 7 5 3 10 10 H 1.48502 * 109.46984 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.46934 * 299.99356 * 9 7 5 12 12 H 1.48492 * 109.47501 * 59.99758 * 9 7 5 13 13 N 1.46902 * 109.47403 * 295.85445 * 3 2 1 14 14 C 1.46907 * 110.99657 * 317.71797 * 13 3 2 15 15 C 1.46896 * 110.99976 * 81.66835 * 13 3 2 16 16 C 1.52998 * 109.47172 * 160.62332 * 15 13 3 17 17 O 1.42899 * 110.01961 * 61.68384 * 16 15 13 18 18 C 1.54268 * 110.03027 * 300.24497 * 16 15 13 19 19 C 1.54897 * 104.19604 * 217.10396 * 18 16 15 20 20 C 1.54886 * 102.74311 * 37.94110 * 19 18 16 21 21 C 1.53869 * 110.03492 * 183.07924 * 16 15 13 22 22 H 1.09002 * 109.46911 * 76.04384 * 1 2 3 23 23 H 1.08995 * 109.47289 * 196.04685 * 1 2 3 24 24 H 1.09003 * 109.46737 * 316.05019 * 1 2 3 25 25 H 1.08999 * 109.47082 * 240.00014 * 2 1 3 26 26 H 1.08998 * 109.47195 * 120.00122 * 2 1 3 27 27 H 0.97004 * 120.00101 * 354.81511 * 8 7 5 28 28 H 1.08996 * 109.47031 * 70.66260 * 14 13 3 29 29 H 1.08995 * 109.47115 * 190.66396 * 14 13 3 30 30 H 1.09007 * 109.46866 * 310.66101 * 14 13 3 31 31 H 1.09001 * 109.47348 * 280.62475 * 15 13 3 32 32 H 1.08999 * 109.47284 * 40.62022 * 15 13 3 33 33 H 0.96700 * 114.00498 * 180.02562 * 17 16 15 34 34 H 1.08997 * 110.48644 * 335.78400 * 18 16 15 35 35 H 1.09006 * 110.48712 * 98.42618 * 18 16 15 36 36 H 1.09005 * 110.75231 * 279.62974 * 19 18 16 37 37 H 1.08998 * 110.75342 * 156.25661 * 19 18 16 38 38 H 1.09002 * 110.48105 * 203.37496 * 20 19 18 39 39 H 1.09000 * 110.48659 * 80.73763 * 20 19 18 40 40 H 1.08999 * 110.03204 * 238.56973 * 21 16 15 41 41 H 1.08998 * 110.03596 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6174 1.9773 0.8506 5 6 3.5435 1.4437 0.1027 6 1 4.1408 1.8052 -0.7212 7 6 4.1566 0.9833 1.2487 8 7 3.4367 0.7070 2.3140 9 14 6.0098 0.7522 1.2881 10 1 6.4179 0.2516 2.6254 11 1 6.4083 -0.2306 0.2485 12 1 6.6766 2.0520 1.0221 13 7 1.6338 2.1055 -1.2464 14 6 1.8132 1.2136 -2.3998 15 6 0.2473 2.5832 -1.1609 16 6 0.0108 3.6558 -2.2259 17 8 0.2031 3.1020 -3.5291 18 6 0.9749 4.8400 -2.0064 19 6 0.1310 6.0884 -2.3650 20 6 -1.2675 5.7277 -1.8055 21 6 -1.4149 4.2203 -2.0981 22 1 -0.3633 0.2479 -0.9974 23 1 -0.3633 -0.9876 0.2841 24 1 -0.3633 0.7399 0.7133 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.4856 0.8977 2.3194 28 1 1.0712 0.4161 -2.3612 29 1 1.6883 1.7818 -3.3214 30 1 2.8134 0.7809 -2.3724 31 1 -0.4351 1.7496 -1.3269 32 1 0.0693 3.0070 -0.1725 33 1 0.0678 3.7335 -4.2488 34 1 1.2960 4.8826 -0.9657 35 1 1.8364 4.7585 -2.6694 36 1 0.0902 6.2298 -3.4451 37 1 0.5268 6.9766 -1.8726 38 1 -2.0425 6.2942 -2.3217 39 1 -1.3085 5.9137 -0.7323 40 1 -1.9599 4.0724 -3.0304 41 1 -1.9385 3.7298 -1.2776 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167163121.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:16 Heat of formation + Delta-G solvation = -77.515172 kcal Electronic energy + Delta-G solvation = -19036.422453 eV Core-core repulsion = 16335.954318 eV Total energy + Delta-G solvation = -2700.468136 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.70398 -38.82343 -35.53467 -34.87638 -32.63832 -30.55076 -29.58779 -28.57343 -26.79077 -25.29381 -23.40091 -21.65124 -21.19147 -20.75005 -18.72272 -17.77987 -17.05184 -16.80677 -15.94094 -15.67336 -15.42037 -14.88726 -14.70191 -14.52589 -14.33668 -13.80971 -13.54081 -13.35167 -12.95452 -12.73702 -12.52068 -12.46673 -12.36102 -12.19448 -12.00218 -11.94589 -11.89554 -11.85898 -11.69134 -11.43561 -11.30764 -10.63694 -10.52379 -10.33893 -8.76639 -8.53937 -6.23152 1.53349 1.60638 1.80147 2.58826 3.20576 3.28424 3.39046 3.74182 3.82642 3.95913 4.11782 4.26389 4.31517 4.43645 4.50520 4.56876 4.62397 4.64573 4.69037 4.74484 4.81992 4.84527 4.97903 4.98569 5.05778 5.09066 5.14336 5.20717 5.26597 5.30966 5.45287 5.47591 5.52028 5.54131 6.02180 6.16038 6.57178 6.60223 6.82359 7.03108 7.52832 8.81794 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028378 B = 0.007042 C = 0.006512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.440564 B = 3975.191805 C = 4298.870045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.145 4.145 3 C 0.209 3.791 4 H -0.005 1.005 5 C -0.587 4.587 6 H 0.042 0.958 7 C -0.029 4.029 8 N -0.936 5.936 9 Si 1.109 2.891 10 H -0.285 1.285 11 H -0.274 1.274 12 H -0.275 1.275 13 N -0.526 5.526 14 C 0.046 3.954 15 C 0.060 3.940 16 C 0.141 3.859 17 O -0.561 6.561 18 C -0.131 4.131 19 C -0.122 4.122 20 C -0.119 4.119 21 C -0.145 4.145 22 H 0.063 0.937 23 H 0.054 0.946 24 H 0.043 0.957 25 H 0.048 0.952 26 H 0.035 0.965 27 H 0.257 0.743 28 H 0.014 0.986 29 H 0.088 0.912 30 H 0.036 0.964 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.382 0.618 34 H 0.046 0.954 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.059 0.941 40 H 0.088 0.912 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.897 7.911 -10.781 16.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.184 4.184 3 C 0.101 3.899 4 H 0.013 0.987 5 C -0.625 4.625 6 H 0.060 0.940 7 C -0.227 4.227 8 N -0.574 5.574 9 Si 0.932 3.068 10 H -0.210 1.210 11 H -0.200 1.200 12 H -0.200 1.200 13 N -0.248 5.248 14 C -0.102 4.102 15 C -0.068 4.068 16 C 0.100 3.900 17 O -0.369 6.369 18 C -0.169 4.169 19 C -0.160 4.160 20 C -0.157 4.157 21 C -0.184 4.184 22 H 0.082 0.918 23 H 0.073 0.927 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.032 0.968 29 H 0.106 0.894 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.231 0.769 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.106 0.894 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.225 7.252 -9.560 14.548 hybrid contribution -1.698 0.082 -0.569 1.793 sum -9.924 7.335 -10.129 15.965 Atomic orbital electron populations 1.22044 0.95829 1.01077 1.01143 1.22141 0.95090 1.01019 1.00196 1.19278 0.94687 0.88603 0.87308 0.98696 1.22209 0.92402 1.45031 1.02880 0.94003 1.27045 1.10211 0.93578 0.91833 1.70897 1.08772 1.47304 1.30407 0.83032 0.70336 0.77350 0.76090 1.21020 1.20008 1.20028 1.62094 1.20106 1.39200 1.03440 1.22320 0.98641 0.94842 0.94439 1.22517 0.90177 0.97152 0.96963 1.21805 0.93528 0.91863 0.82841 1.86567 1.93171 1.41847 1.15361 1.22764 0.98114 0.94915 1.01143 1.22554 0.94943 0.96870 1.01594 1.22339 0.97514 0.94772 1.01072 1.22835 0.95748 0.96672 1.03121 0.91800 0.92671 0.93757 0.93374 0.94595 0.93325 0.96763 0.89388 0.94502 0.93733 0.92264 0.76860 0.93492 0.92143 0.89862 0.91261 0.89475 0.92232 0.89375 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.58 8.29 71.98 0.60 -4.99 16 2 C -0.14 -6.94 4.62 30.59 0.14 -6.80 16 3 C 0.21 10.77 1.54 44.17 0.07 10.84 16 4 H 0.00 -0.27 6.73 -2.39 -0.02 -0.29 16 5 C -0.59 -33.89 8.05 25.60 0.21 -33.68 16 6 H 0.04 2.47 7.76 -2.91 -0.02 2.45 16 7 C -0.03 -1.67 5.18 84.66 0.44 -1.23 16 8 N -0.94 -57.49 12.84 21.45 0.28 -57.21 16 9 Si 1.11 51.76 29.91 68.60 2.05 53.81 16 10 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 13 N -0.53 -23.06 4.16 -901.46 -3.75 -26.81 16 14 C 0.05 1.87 7.67 127.69 0.98 2.85 16 15 C 0.06 2.19 2.78 86.30 0.24 2.43 16 16 C 0.14 3.99 1.08 -10.07 -0.01 3.98 16 17 O -0.56 -15.13 9.93 -148.98 -1.48 -16.61 16 18 C -0.13 -3.81 5.70 31.67 0.18 -3.63 16 19 C -0.12 -2.48 6.91 31.89 0.22 -2.26 16 20 C -0.12 -2.25 6.83 31.67 0.22 -2.03 16 21 C -0.15 -3.17 6.24 31.31 0.20 -2.97 16 22 H 0.06 2.30 4.55 -2.39 -0.01 2.29 16 23 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.04 1.70 7.75 -2.39 -0.02 1.68 16 25 H 0.05 2.30 6.21 -2.39 -0.01 2.28 16 26 H 0.04 1.92 6.54 -2.39 -0.02 1.91 16 27 H 0.26 15.94 6.37 -92.71 -0.59 15.35 16 28 H 0.01 0.56 5.52 -2.39 -0.01 0.55 16 29 H 0.09 3.31 5.64 -2.39 -0.01 3.30 16 30 H 0.04 1.65 7.31 -2.38 -0.02 1.64 16 31 H 0.04 1.60 4.77 -2.39 -0.01 1.59 16 32 H 0.06 2.28 7.58 -2.39 -0.02 2.27 16 33 H 0.38 6.89 9.05 -74.06 -0.67 6.22 16 34 H 0.05 1.65 7.85 -2.39 -0.02 1.63 16 35 H 0.06 1.90 8.07 -2.38 -0.02 1.88 16 36 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.09 1.24 8.14 -2.39 -0.02 1.23 16 39 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.09 1.61 7.95 -2.39 -0.02 1.59 16 41 H 0.06 1.48 7.67 -2.39 -0.02 1.46 16 Total: -1.00 -65.89 301.07 1.09 -64.80 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.52 Total: 19.50 kcal Atomic # 6 Polarization: -40.96 SS G_CDS: 3.47 Total: -37.49 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: -3.47 Total: -84.02 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -1.48 Total: -16.61 kcal Atomic # 14 Polarization: 51.76 SS G_CDS: 2.05 Total: 53.81 kcal Total: -65.89 1.09 -64.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167163121.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.711 kcal (2) G-P(sol) polarization free energy of solvation -65.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds