Wall clock time and date at job start Mon Mar 30 2020 05:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 110.53943 * 2 1 4 4 C 1.54889 * 110.48776 * 237.38567 * 2 1 3 5 5 C 1.54887 * 102.74938 * 203.37880 * 4 2 1 6 6 C 1.54264 * 104.19579 * 37.94166 * 5 4 2 7 7 C 1.53004 * 110.07328 * 95.70015 * 6 5 4 8 8 O 1.42894 * 109.47174 * 67.48529 * 7 6 5 9 9 N 1.46906 * 110.03111 * 217.10543 * 6 5 4 10 10 C 1.46900 * 110.99864 * 57.54962 * 9 6 5 11 11 C 1.46897 * 110.99775 * 181.50166 * 9 6 5 12 12 C 1.53006 * 109.46954 * 161.38363 * 11 9 6 13 13 C 1.50701 * 109.46889 * 179.97438 * 12 11 9 14 14 H 1.08000 * 120.00536 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99775 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00081 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00176 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47130 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47231 * 119.99739 * 17 15 13 20 20 H 1.48494 * 109.47078 * 239.99812 * 17 15 13 21 21 C 1.53875 * 106.59794 * 336.38918 * 6 5 4 22 22 H 1.08995 * 109.46715 * 297.38844 * 1 2 3 23 23 H 1.08999 * 109.47120 * 57.39082 * 1 2 3 24 24 H 1.09007 * 109.46555 * 177.38836 * 1 2 3 25 25 H 1.09002 * 110.75346 * 321.69298 * 4 2 1 26 26 H 1.08995 * 110.75654 * 85.06170 * 4 2 1 27 27 H 1.09006 * 110.48659 * 279.26515 * 5 4 2 28 28 H 1.08995 * 110.48912 * 156.62043 * 5 4 2 29 29 H 1.08998 * 109.46825 * 187.48605 * 7 6 5 30 30 H 1.08995 * 109.46624 * 307.48270 * 7 6 5 31 31 H 0.96697 * 114.00037 * 180.02562 * 8 7 6 32 32 H 1.09004 * 109.47108 * 178.63449 * 10 9 6 33 33 H 1.09001 * 109.47183 * 58.63758 * 10 9 6 34 34 H 1.08995 * 109.47095 * 298.63445 * 10 9 6 35 35 H 1.09002 * 109.47132 * 281.38367 * 11 9 6 36 36 H 1.09001 * 109.47451 * 41.38451 * 11 9 6 37 37 H 1.08993 * 109.47245 * 299.99692 * 12 11 9 38 38 H 1.09000 * 109.46860 * 60.00338 * 12 11 9 39 39 H 0.97002 * 120.00209 * 180.02562 * 16 15 13 40 40 H 1.08999 * 110.03141 * 119.28981 * 21 6 5 41 41 H 1.09003 * 110.03202 * 240.66312 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0722 -0.7820 -1.2221 5 6 3.4907 -1.1979 -0.7599 6 6 3.3166 -1.5404 0.7341 7 6 3.1104 -3.0466 0.9070 8 8 4.3128 -3.7352 0.5578 9 7 4.4976 -1.1045 1.4913 10 6 4.7299 0.3360 1.3209 11 6 4.3696 -1.4526 2.9126 12 6 5.7500 -1.4204 3.5719 13 6 5.6185 -1.7769 5.0302 14 1 4.6477 -2.0042 5.4453 15 6 6.7377 -1.8129 5.8346 16 7 7.9200 -1.5367 5.3292 17 14 6.5751 -2.2555 7.6421 18 1 5.1491 -2.5215 7.9602 19 1 7.3814 -3.4690 7.9291 20 1 7.0652 -1.1274 8.4740 21 6 2.0700 -0.7787 1.2173 22 1 -0.3632 0.4727 0.9124 23 1 -0.3633 0.5538 -0.8657 24 1 -0.3633 -1.0267 -0.0468 25 1 1.4581 -1.6601 -1.4222 26 1 2.1252 -0.1383 -2.1001 27 1 4.1898 -0.3706 -0.8827 28 1 3.8317 -2.0722 -1.3145 29 1 2.8568 -3.2618 1.9450 30 1 2.2998 -3.3791 0.2585 31 1 4.2545 -4.6966 0.6435 32 1 5.5955 0.6368 1.9111 33 1 3.8518 0.8878 1.6565 34 1 4.9147 0.5523 0.2687 35 1 3.7148 -0.7337 3.4052 36 1 3.9461 -2.4527 3.0051 37 1 6.4047 -2.1392 3.0794 38 1 6.1734 -0.4202 3.4795 39 1 8.7074 -1.5624 5.8950 40 1 1.3177 -1.4821 1.5742 41 1 2.3411 -0.0863 2.0142 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187995356.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:15 Heat of formation + Delta-G solvation = -80.054773 kcal Electronic energy + Delta-G solvation = -18614.237689 eV Core-core repulsion = 15913.659428 eV Total energy + Delta-G solvation = -2700.578261 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.11585 -37.14183 -36.91062 -34.99941 -32.35838 -30.92630 -30.19040 -27.57930 -26.80387 -25.34150 -24.39892 -22.12455 -20.82777 -19.52419 -18.52820 -18.08603 -17.51264 -16.49297 -16.36343 -15.98926 -15.40257 -14.86955 -14.80508 -14.35795 -14.25516 -13.95570 -13.69303 -13.25873 -13.10324 -12.92418 -12.75049 -12.65401 -12.45033 -12.30840 -12.22182 -11.88430 -11.62589 -11.51824 -11.34344 -11.31558 -11.19663 -11.11324 -10.68734 -10.52247 -8.95963 -8.19175 -6.31161 1.38812 1.39884 1.53024 2.39966 3.03157 3.13717 3.40309 3.70616 3.75546 4.07256 4.20707 4.26235 4.27801 4.47270 4.48229 4.51686 4.60953 4.67443 4.70170 4.74294 4.76627 4.80825 4.95631 5.02906 5.06589 5.07894 5.16190 5.20855 5.28733 5.37133 5.45965 5.49965 5.56562 5.70171 5.82862 6.15892 6.40659 6.46149 6.86889 7.03889 7.37947 8.93476 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.033249 B = 0.005633 C = 0.005466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.919164 B = 4969.751190 C = 5121.429449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 H 0.069 0.931 4 C -0.110 4.110 5 C -0.110 4.110 6 C 0.103 3.897 7 C 0.091 3.909 8 O -0.574 6.574 9 N -0.535 5.535 10 C 0.026 3.974 11 C 0.085 3.915 12 C 0.042 3.958 13 C -0.542 4.542 14 H 0.058 0.942 15 C 0.001 3.999 16 N -0.933 5.933 17 Si 0.968 3.032 18 H -0.261 1.261 19 H -0.277 1.277 20 H -0.277 1.277 21 C -0.145 4.145 22 H 0.050 0.950 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.034 0.966 30 H 0.071 0.929 31 H 0.386 0.614 32 H 0.043 0.957 33 H 0.031 0.969 34 H 0.081 0.919 35 H 0.016 0.984 36 H 0.061 0.939 37 H -0.014 1.014 38 H -0.013 1.013 39 H 0.263 0.737 40 H 0.073 0.927 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.585 0.382 -12.543 20.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 H 0.087 0.913 4 C -0.147 4.147 5 C -0.147 4.147 6 C 0.013 3.987 7 C 0.013 3.987 8 O -0.381 6.381 9 N -0.258 5.258 10 C -0.122 4.122 11 C -0.042 4.042 12 C 0.004 3.996 13 C -0.581 4.581 14 H 0.076 0.924 15 C -0.197 4.197 16 N -0.573 5.573 17 Si 0.792 3.208 18 H -0.185 1.185 19 H -0.202 1.202 20 H -0.203 1.203 21 C -0.184 4.184 22 H 0.070 0.930 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.052 0.948 30 H 0.089 0.911 31 H 0.234 0.766 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.100 0.900 35 H 0.034 0.966 36 H 0.079 0.921 37 H 0.005 0.995 38 H 0.005 0.995 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.793 0.749 -12.797 19.574 hybrid contribution -0.229 -0.279 1.646 1.685 sum -15.022 0.470 -11.150 18.714 Atomic orbital electron populations 1.21766 0.93588 1.02266 1.01962 1.21903 0.96430 0.98674 0.93881 0.91273 1.22566 0.94604 1.00153 0.97392 1.22443 0.98063 1.01436 0.92805 1.21962 0.88254 0.93448 0.95032 1.22324 0.86945 0.91253 0.98192 1.86617 1.36837 1.23899 1.90704 1.62091 1.38275 1.15578 1.09846 1.22415 0.99788 0.87980 1.01993 1.21921 0.97288 0.98626 0.86413 1.18844 0.92582 0.94483 0.93662 1.21642 0.93802 1.46937 0.95684 0.92351 1.25989 0.94802 0.95058 1.03864 1.70137 0.99222 1.50201 1.37751 0.85365 0.78681 0.77955 0.78814 1.18492 1.20246 1.20277 1.22854 0.97345 0.99413 0.98820 0.93045 0.91457 0.92108 0.90425 0.90096 0.91474 0.91506 0.94766 0.91072 0.76629 0.93810 0.95035 0.90022 0.96626 0.92091 0.99533 0.99514 0.92790 0.90859 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.12 71.98 0.66 -1.52 16 2 C -0.09 -1.79 3.46 -9.72 -0.03 -1.83 16 3 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 4 C -0.11 -2.03 6.33 31.88 0.20 -1.83 16 5 C -0.11 -2.81 5.78 31.67 0.18 -2.62 16 6 C 0.10 3.07 0.39 4.25 0.00 3.07 16 7 C 0.09 2.58 5.04 71.98 0.36 2.94 16 8 O -0.57 -18.34 12.97 -148.98 -1.93 -20.27 16 9 N -0.53 -20.85 4.32 -868.49 -3.75 -24.60 16 10 C 0.03 0.93 8.78 127.69 1.12 2.05 16 11 C 0.08 3.84 4.17 86.31 0.36 4.20 16 12 C 0.04 2.39 5.07 29.85 0.15 2.54 16 13 C -0.54 -32.27 9.11 25.60 0.23 -32.04 16 14 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 15 C 0.00 0.03 5.46 84.66 0.46 0.50 16 16 N -0.93 -59.07 13.29 21.45 0.28 -58.79 16 17 Si 0.97 45.41 29.54 68.60 2.03 47.43 16 18 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 C -0.15 -3.74 4.67 31.32 0.15 -3.59 16 22 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.06 0.88 8.12 -2.38 -0.02 0.86 16 25 H 0.08 1.27 8.04 -2.39 -0.02 1.25 16 26 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.07 1.82 5.57 -2.38 -0.01 1.81 16 28 H 0.07 1.79 7.53 -2.39 -0.02 1.77 16 29 H 0.03 1.04 6.37 -2.39 -0.02 1.02 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.39 8.64 9.12 -74.06 -0.68 7.97 16 32 H 0.04 1.80 6.67 -2.38 -0.02 1.78 16 33 H 0.03 1.03 6.26 -2.39 -0.01 1.02 16 34 H 0.08 2.53 5.90 -2.39 -0.01 2.51 16 35 H 0.02 0.70 7.08 -2.39 -0.02 0.68 16 36 H 0.06 2.72 5.59 -2.39 -0.01 2.71 16 37 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 38 H -0.01 -0.83 6.79 -2.39 -0.02 -0.85 16 39 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 40 H 0.07 1.74 7.37 -2.39 -0.02 1.72 16 41 H 0.05 1.56 5.24 -2.39 -0.01 1.55 16 Total: -1.00 -71.04 309.35 0.80 -70.24 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.33 Total: 14.12 kcal Atomic # 6 Polarization: -31.97 SS G_CDS: 3.85 Total: -28.13 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -3.47 Total: -83.39 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -1.93 Total: -20.27 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -71.04 0.80 -70.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187995356.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.817 kcal (2) G-P(sol) polarization free energy of solvation -71.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds