Wall clock time and date at job start Mon Mar 30 2020 05:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.44911 * 2 1 4 4 C 1.53033 * 109.45952 * 119.97074 * 2 1 3 5 5 C 1.53121 * 109.30720 * 179.21161 * 4 2 1 6 6 O 1.42900 * 109.52599 * 182.35808 * 5 4 2 7 7 C 1.53119 * 109.16506 * 302.32959 * 5 4 2 8 8 C 1.53039 * 109.27599 * 57.65293 * 7 5 4 9 9 H 1.09002 * 109.45928 * 180.80723 * 8 7 5 10 10 C 1.52996 * 109.46384 * 60.82850 * 8 7 5 11 11 N 1.46850 * 109.52273 * 300.82225 * 8 7 5 12 12 C 1.46896 * 110.99744 * 185.84552 * 11 8 7 13 13 C 1.52991 * 109.47802 * 64.11828 * 12 11 8 14 14 C 1.53003 * 109.47669 * 174.72786 * 13 12 11 15 15 C 1.50692 * 109.47438 * 180.02562 * 14 13 12 16 16 H 1.08010 * 119.99889 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00153 * 180.02562 * 15 14 13 18 18 N 1.31507 * 120.00095 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00003 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47344 * 89.99964 * 19 17 15 21 21 H 1.48499 * 109.47035 * 209.99952 * 19 17 15 22 22 H 1.48500 * 109.47233 * 329.99768 * 19 17 15 23 23 H 1.08996 * 109.46895 * 293.12063 * 1 2 3 24 24 H 1.09000 * 109.47209 * 53.12529 * 1 2 3 25 25 H 1.08999 * 109.46712 * 173.12395 * 1 2 3 26 26 H 1.09003 * 109.50435 * 59.26119 * 4 2 1 27 27 H 1.08995 * 109.50710 * 299.17406 * 4 2 1 28 28 H 1.08998 * 109.52403 * 62.23658 * 5 4 2 29 29 H 0.96695 * 114.00941 * 180.02562 * 6 5 4 30 30 H 1.08994 * 109.50194 * 177.59247 * 7 5 4 31 31 H 1.09003 * 109.49951 * 297.67302 * 7 5 4 32 32 H 1.08996 * 109.47410 * 59.99545 * 10 8 7 33 33 H 1.09000 * 109.47250 * 179.97438 * 10 8 7 34 34 H 1.09001 * 109.47059 * 299.99786 * 10 8 7 35 35 H 1.09002 * 109.47084 * 184.12461 * 12 11 8 36 36 H 1.09006 * 109.47147 * 304.11759 * 12 11 8 37 37 H 1.09003 * 109.47249 * 294.73024 * 13 12 11 38 38 H 1.08998 * 109.47308 * 54.72736 * 13 12 11 39 39 H 1.08995 * 109.46703 * 300.00358 * 14 13 12 40 40 H 1.08998 * 109.46796 * 59.99637 * 14 13 12 41 41 H 0.96999 * 120.00884 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5710 -0.7360 1.2365 6 8 4.0514 -1.4558 2.3737 7 6 4.0557 -1.4191 -0.0453 8 6 3.4881 -0.6782 -1.2582 9 1 3.8197 -1.1707 -2.1723 10 6 3.9846 0.7689 -1.2498 11 7 2.0209 -0.6923 -1.1994 12 6 1.4397 -0.1115 -2.4171 13 6 1.8051 -0.9811 -3.6216 14 6 1.0928 -0.4516 -4.8679 15 6 1.4523 -1.3085 -6.0542 16 1 2.1222 -2.1468 -5.9316 17 6 0.9269 -1.0218 -7.2963 18 7 0.1116 -0.0008 -7.4457 19 14 1.3719 -2.0845 -8.7666 20 1 0.3968 -3.1981 -8.8859 21 1 1.3361 -1.2608 -10.0017 22 1 2.7368 -2.6395 -8.5813 23 1 -0.3633 0.4035 0.9451 24 1 -0.3633 0.6167 -0.8221 25 1 -0.3633 -1.0203 -0.1230 26 1 1.6660 -1.7447 1.2576 27 1 1.6889 -0.1985 2.1399 28 1 3.9457 0.2870 1.2682 29 1 5.0155 -1.5052 2.4295 30 1 5.1448 -1.3949 -0.0810 31 1 3.7139 -2.4541 -0.0576 32 1 5.0736 0.7797 -1.2942 33 1 3.5808 1.2966 -2.1139 34 1 3.6534 1.2614 -0.3355 35 1 0.3552 -0.0671 -2.3166 36 1 1.8325 0.8948 -2.5630 37 1 2.8833 -0.9499 -3.7786 38 1 1.4947 -2.0092 -3.4351 39 1 0.0147 -0.4828 -4.7110 40 1 1.4032 0.5765 -5.0545 41 1 -0.2584 0.2008 -8.3193 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191288199.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:44 Heat of formation + Delta-G solvation = -68.850594 kcal Electronic energy + Delta-G solvation = -18259.738180 eV Core-core repulsion = 15559.645769 eV Total energy + Delta-G solvation = -2700.092411 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -40.05355 -36.84599 -34.16253 -33.21783 -32.39948 -30.35320 -28.05539 -26.67987 -26.14804 -23.50606 -22.17483 -21.24124 -19.87838 -18.47694 -17.30037 -16.35834 -15.79218 -15.72394 -14.86398 -14.44540 -14.02529 -13.92234 -13.75144 -13.41927 -12.70864 -12.51471 -12.21741 -12.01622 -11.85299 -11.78792 -11.49390 -11.39414 -11.21746 -10.89045 -10.81213 -10.66966 -10.58620 -10.45379 -10.15420 -9.82185 -9.44428 -9.28916 -9.02462 -8.31837 -7.96409 -5.97322 -3.99143 3.33731 3.39743 3.43231 4.00837 4.10427 4.48805 4.71792 4.74536 5.02657 5.04054 5.23317 5.32589 5.38587 5.40004 5.45560 5.51508 5.57657 5.75417 5.79651 5.82428 5.91664 5.98232 6.03155 6.08958 6.16619 6.20392 6.27709 6.41929 6.46593 6.74247 6.86109 7.17120 7.44446 7.46383 7.51005 7.71469 7.87174 8.03411 8.47084 9.08090 9.64744 11.14155 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.038706 B = 0.004780 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.222751 B = 5856.465890 C = 6200.021041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.080 3.920 3 H 0.042 0.958 4 C -0.102 4.102 5 C 0.102 3.898 6 O -0.570 6.570 7 C -0.141 4.141 8 C 0.080 3.920 9 H 0.094 0.906 10 C -0.191 4.191 11 N -0.527 5.527 12 C 0.049 3.951 13 C -0.104 4.104 14 C 0.023 3.977 15 C -0.517 4.517 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.891 3.109 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.374 0.626 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.030 0.970 37 H 0.044 0.956 38 H 0.056 0.944 39 H 0.015 0.985 40 H 0.012 0.988 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.587 0.960 17.220 18.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 H 0.060 0.940 4 C -0.140 4.140 5 C 0.044 3.956 6 O -0.375 6.375 7 C -0.179 4.179 8 C -0.029 4.029 9 H 0.112 0.888 10 C -0.250 4.250 11 N -0.251 5.251 12 C -0.077 4.077 13 C -0.142 4.142 14 C -0.015 4.015 15 C -0.556 4.556 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.221 0.779 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.048 0.952 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.034 0.966 40 H 0.031 0.969 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.676 0.505 17.232 18.150 hybrid contribution 1.107 0.446 -1.152 1.659 sum 6.783 0.951 16.080 17.478 Atomic orbital electron populations 1.21900 0.94043 1.03047 1.01504 1.21553 0.95631 0.95545 0.90143 0.94010 1.21568 0.92921 1.02507 0.97013 1.21934 0.95241 0.93826 0.84644 1.86506 1.26343 1.78051 1.46619 1.22303 0.99774 1.01300 0.94548 1.21640 0.87959 0.94525 0.98736 0.88808 1.22525 1.01506 0.98722 1.02200 1.62295 1.05870 1.54794 1.02165 1.22402 0.99712 0.96516 0.89099 1.21651 0.99798 0.98842 0.93950 1.19062 0.95539 0.96166 0.90740 1.21253 1.27834 1.13271 0.93206 0.92743 1.25017 0.95210 0.95289 0.98950 1.69960 1.31995 1.28062 1.23626 0.86613 0.78857 0.80382 0.82265 1.20660 1.21283 1.19915 0.92522 0.91976 0.91460 0.90365 0.91412 0.93009 0.77891 0.91721 0.90288 0.92352 0.91719 0.92554 0.90580 0.95171 0.93698 0.92573 0.96635 0.96918 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.54 37.16 0.32 -1.48 16 2 C 0.08 1.02 2.15 -67.68 -0.15 0.87 16 3 H 0.04 0.53 6.19 -51.93 -0.32 0.21 16 4 C -0.10 -1.22 5.02 -26.65 -0.13 -1.35 16 5 C 0.10 1.13 3.23 -26.61 -0.09 1.04 16 6 O -0.57 -6.17 13.33 -35.23 -0.47 -6.63 16 7 C -0.14 -1.62 5.24 -26.65 -0.14 -1.76 16 8 C 0.08 1.08 2.75 -67.72 -0.19 0.90 16 9 H 0.09 1.41 6.26 -51.93 -0.32 1.08 16 10 C -0.19 -2.35 8.19 37.16 0.30 -2.05 16 11 N -0.53 -7.82 4.45 -218.70 -0.97 -8.80 16 12 C 0.05 0.86 4.47 -3.83 -0.02 0.84 16 13 C -0.10 -2.18 4.90 -26.73 -0.13 -2.31 16 14 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 15 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 16 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.18 13.28 55.43 0.74 -26.44 16 19 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.79 6.57 -51.93 -0.34 0.45 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.54 6.56 -51.93 -0.34 0.20 16 29 H 0.37 2.46 9.09 45.56 0.41 2.87 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.90 6.46 -51.93 -0.34 0.56 16 34 H 0.06 0.65 4.80 -51.93 -0.25 0.40 16 35 H 0.08 1.33 5.90 -51.93 -0.31 1.03 16 36 H 0.03 0.52 6.28 -51.93 -0.33 0.20 16 37 H 0.04 0.92 6.64 -51.93 -0.34 0.57 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 308.15 15.07 4.64 4.64 Total: -1.00 -30.88 308.15 -8.10 -38.98 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -6.24 Total: -0.15 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -0.77 Total: -18.44 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: -0.24 Total: -35.24 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.47 Total: -6.63 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.88 -8.10 -38.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191288199.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.872 kcal (2) G-P(sol) polarization free energy of solvation -30.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds