Wall clock time and date at job start Mon Mar 30 2020 05:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.45580 * 2 1 4 4 C 1.53043 * 109.46422 * 240.03184 * 2 1 3 5 5 C 1.53119 * 109.27502 * 299.16449 * 4 2 1 6 6 O 1.42901 * 109.52091 * 182.44127 * 5 4 2 7 7 C 1.53117 * 109.15994 * 302.33989 * 5 4 2 8 8 C 1.53042 * 109.27641 * 57.66105 * 7 5 4 9 9 H 1.08996 * 109.45207 * 60.82860 * 8 7 5 10 10 C 1.52999 * 109.46223 * 180.80282 * 8 7 5 11 11 N 1.46847 * 109.52158 * 300.81531 * 8 7 5 12 12 C 1.46893 * 111.00088 * 185.83696 * 11 8 7 13 13 C 1.53002 * 109.47336 * 168.47725 * 12 11 8 14 14 C 1.52998 * 109.47338 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47006 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00459 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99992 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00113 * 179.97438 * 17 15 14 19 19 Si 1.86807 * 119.99979 * 0.02562 * 17 15 14 20 20 H 1.48490 * 109.47256 * 89.99536 * 19 17 15 21 21 H 1.48496 * 109.46747 * 209.99932 * 19 17 15 22 22 H 1.48505 * 109.46844 * 329.99692 * 19 17 15 23 23 H 1.08998 * 109.47137 * 300.02258 * 1 2 3 24 24 H 1.09005 * 109.47012 * 60.02773 * 1 2 3 25 25 H 1.09004 * 109.47233 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.50402 * 179.22024 * 4 2 1 27 27 H 1.09004 * 109.50212 * 59.10148 * 4 2 1 28 28 H 1.08998 * 109.52469 * 62.25227 * 5 4 2 29 29 H 0.96700 * 114.00057 * 299.67796 * 6 5 4 30 30 H 1.08999 * 109.50929 * 297.71906 * 7 5 4 31 31 H 1.09007 * 109.50398 * 177.59273 * 7 5 4 32 32 H 1.09000 * 109.47091 * 187.01035 * 10 8 7 33 33 H 1.08998 * 109.47143 * 307.01033 * 10 8 7 34 34 H 1.08998 * 109.47218 * 67.01228 * 10 8 7 35 35 H 1.08998 * 109.46908 * 48.47891 * 12 11 8 36 36 H 1.09006 * 109.47419 * 288.47668 * 12 11 8 37 37 H 1.08998 * 109.46987 * 60.00214 * 13 12 11 38 38 H 1.09006 * 109.46820 * 300.00310 * 13 12 11 39 39 H 1.08996 * 109.47167 * 299.99811 * 14 13 12 40 40 H 1.08998 * 109.47171 * 60.00004 * 14 13 12 41 41 H 0.97003 * 119.99890 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 1.5443 -2.1695 -1.2358 6 8 2.0643 -2.8633 -2.3717 7 6 2.0270 -2.8531 0.0464 8 6 1.5174 -2.0706 1.2589 9 1 0.4275 -2.0609 1.2528 10 6 2.0141 -2.7388 2.5425 11 7 2.0193 -0.6918 1.1993 12 6 1.6651 0.0504 2.4165 13 6 2.4369 1.3711 2.4513 14 6 2.0684 2.1439 3.7193 15 6 2.8291 3.4443 3.7538 16 1 3.5077 3.6945 2.9519 17 6 2.6586 4.3149 4.8094 18 7 3.3227 5.4496 4.8398 19 14 1.4852 3.8820 6.1970 20 1 2.2192 3.1384 7.2521 21 1 0.9184 5.1280 6.7726 22 1 0.3851 3.0356 5.6690 23 1 -0.3633 0.5142 0.8898 24 1 -0.3633 0.5134 -0.8903 25 1 -0.3634 -1.0277 0.0005 26 1 3.1298 -0.7091 -1.2577 27 1 1.6637 -0.2162 -2.1400 28 1 0.4548 -2.1820 -1.2674 29 1 1.7980 -2.4837 -3.2202 30 1 3.1167 -2.8750 0.0592 31 1 1.6414 -3.8721 0.0829 32 1 1.5517 -2.2583 3.4047 33 1 1.7469 -3.7955 2.5288 34 1 3.0975 -2.6388 2.6084 35 1 1.9231 -0.5443 3.2927 36 1 0.5944 0.2551 2.4186 37 1 2.1789 1.9658 1.5751 38 1 3.5075 1.1663 2.4491 39 1 0.9978 2.3485 3.7219 40 1 2.3267 1.5489 4.5953 41 1 3.2025 6.0622 5.5822 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191288210.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:52 Heat of formation + Delta-G solvation = -64.616241 kcal Electronic energy + Delta-G solvation = -18309.688100 eV Core-core repulsion = 15609.779304 eV Total energy + Delta-G solvation = -2699.908796 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 2.76 seconds Orbital eigenvalues (eV) -40.12047 -36.89705 -34.26389 -33.28108 -32.39590 -30.65367 -28.18551 -26.73675 -26.49669 -23.48255 -22.05183 -21.21886 -19.88204 -18.56983 -17.33481 -16.67783 -15.92966 -15.87687 -14.92606 -14.29647 -14.01283 -13.94174 -13.81463 -13.53166 -12.84254 -12.64371 -12.45678 -12.10543 -11.94781 -11.83772 -11.63229 -11.56752 -11.29957 -11.03430 -10.92492 -10.77215 -10.60138 -10.33107 -9.90510 -9.80519 -9.57166 -9.47096 -9.13860 -8.51252 -8.04070 -6.01702 -3.99154 3.31754 3.38899 3.42368 3.95017 4.05052 4.47126 4.66949 4.69950 4.96475 4.99540 5.17602 5.27059 5.32318 5.33885 5.39449 5.44782 5.51340 5.67410 5.69872 5.76612 5.84246 5.91319 5.97367 6.00890 6.10957 6.14374 6.19651 6.29373 6.40472 6.59423 6.65164 6.95760 7.30975 7.33404 7.41708 7.48245 7.50867 7.83404 8.58031 9.04206 9.61153 11.11964 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.038788 B = 0.005067 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.703347 B = 5524.336099 C = 5828.760486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.080 3.920 3 H 0.095 0.905 4 C -0.141 4.141 5 C 0.102 3.898 6 O -0.570 6.570 7 C -0.102 4.102 8 C 0.080 3.920 9 H 0.042 0.958 10 C -0.148 4.148 11 N -0.526 5.526 12 C 0.045 3.955 13 C -0.096 4.096 14 C -0.013 4.013 15 C -0.517 4.517 16 H 0.071 0.929 17 C 0.065 3.935 18 N -0.905 5.905 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.267 1.267 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.375 0.625 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.032 0.968 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.012 0.988 40 H 0.010 0.990 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.393 -16.351 -10.970 20.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.029 4.029 3 H 0.113 0.887 4 C -0.179 4.179 5 C 0.044 3.956 6 O -0.375 6.375 7 C -0.140 4.140 8 C -0.029 4.029 9 H 0.060 0.940 10 C -0.205 4.205 11 N -0.250 5.250 12 C -0.082 4.082 13 C -0.134 4.134 14 C -0.051 4.051 15 C -0.555 4.555 16 H 0.089 0.911 17 C -0.136 4.136 18 N -0.544 5.544 19 Si 0.707 3.293 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.191 1.191 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.222 0.778 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.030 0.970 40 H 0.029 0.971 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.583 -16.593 -10.411 20.369 hybrid contribution -1.765 0.433 0.422 1.866 sum -7.349 -16.160 -9.989 20.369 Atomic orbital electron populations 1.22531 0.98020 1.01765 1.02673 1.21654 0.92429 0.99108 0.89706 0.88714 1.22305 1.02736 0.95456 0.97448 1.21929 0.96244 0.91103 0.86363 1.86508 1.77011 1.57659 1.16319 1.21567 1.02721 0.98211 0.91504 1.21544 0.97033 0.89321 0.94989 0.93998 1.21910 1.02664 0.99540 0.96413 1.62236 1.59230 1.01035 1.02516 1.22451 0.98017 0.96275 0.91426 1.21460 0.99703 0.92698 0.99536 1.19546 0.96526 0.95817 0.93187 1.21152 1.25246 1.01241 1.07881 0.91061 1.25039 0.95637 0.94840 0.98043 1.69920 1.42331 1.10109 1.32084 0.86776 0.81984 0.77832 0.82660 1.20300 1.21465 1.19130 0.91799 0.92224 0.92537 0.90199 0.91626 0.93012 0.77840 0.90304 0.91385 0.92100 0.92461 0.91380 0.90641 0.95025 0.92994 0.92060 0.96976 0.97146 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.25 8.19 37.16 0.30 -1.94 16 2 C 0.08 1.04 2.78 -67.72 -0.19 0.85 16 3 H 0.09 1.38 6.28 -51.93 -0.33 1.06 16 4 C -0.14 -1.57 5.24 -26.65 -0.14 -1.71 16 5 C 0.10 1.09 3.23 -26.61 -0.09 1.01 16 6 O -0.57 -6.01 13.32 -35.23 -0.47 -6.48 16 7 C -0.10 -1.17 5.02 -26.65 -0.13 -1.30 16 8 C 0.08 0.96 2.15 -67.72 -0.15 0.82 16 9 H 0.04 0.50 6.19 -51.93 -0.32 0.18 16 10 C -0.15 -1.68 8.55 37.16 0.32 -1.36 16 11 N -0.53 -7.45 4.43 -218.76 -0.97 -8.42 16 12 C 0.05 0.73 4.56 -3.83 -0.02 0.72 16 13 C -0.10 -1.92 5.12 -26.73 -0.14 -2.06 16 14 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 15 C -0.52 -14.94 9.66 -34.44 -0.33 -15.27 16 16 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 17 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 18 N -0.91 -28.25 13.96 55.43 0.77 -27.48 16 19 Si 0.88 21.93 27.47 -169.99 -4.67 17.27 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 23 H 0.06 0.84 6.40 -51.93 -0.33 0.51 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.62 4.80 -51.93 -0.25 0.37 16 26 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.52 6.56 -51.93 -0.34 0.18 16 29 H 0.37 2.38 9.09 45.56 0.41 2.79 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.71 6.50 -51.93 -0.34 0.37 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.20 5.74 -51.93 -0.30 0.90 16 36 H 0.03 0.51 6.16 -51.93 -0.32 0.19 16 37 H 0.05 1.04 6.48 -51.93 -0.34 0.70 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 40 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 41 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 304.34 15.07 4.59 4.59 Total: -1.00 -31.45 304.34 -7.70 -39.14 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -6.18 Total: 0.24 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -0.77 Total: -18.86 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: -0.20 Total: -35.90 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.47 Total: -6.48 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.45 -7.70 -39.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191288210.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.472 kcal (2) G-P(sol) polarization free energy of solvation -31.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.76 seconds