Wall clock time and date at job start Mon Mar 30 2020 05:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46985 * 2 1 4 4 C 1.50696 * 109.47425 * 239.99785 * 2 1 3 5 5 H 1.07992 * 120.00044 * 240.00342 * 4 2 1 6 6 C 1.37879 * 119.99722 * 59.99733 * 4 2 1 7 7 N 1.31510 * 120.00498 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99871 * 180.27637 * 6 4 2 9 9 H 1.48504 * 109.46976 * 269.72476 * 8 6 4 10 10 H 1.48497 * 109.46843 * 29.72576 * 8 6 4 11 11 H 1.48496 * 109.47084 * 149.72609 * 8 6 4 12 12 N 1.46898 * 109.47070 * 119.99793 * 2 1 3 13 13 C 1.46903 * 111.00041 * 275.00378 * 12 2 1 14 14 C 1.53001 * 109.47222 * 179.97438 * 13 12 2 15 15 O 1.42898 * 109.47066 * 64.99929 * 14 13 12 16 16 C 1.53005 * 109.47100 * 304.99803 * 14 13 12 17 17 C 1.53001 * 109.47100 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47086 * 59.99952 * 17 16 14 19 19 C 1.53005 * 109.47190 * 299.99992 * 18 17 16 20 20 H 1.08999 * 109.46950 * 180.02562 * 19 18 17 21 21 C 1.52995 * 109.46982 * 299.99936 * 19 18 17 22 22 C 1.52998 * 109.47086 * 184.99755 * 14 13 12 23 23 H 1.09007 * 109.46899 * 60.00303 * 1 2 3 24 24 H 1.08999 * 109.46985 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47405 * 300.00057 * 1 2 3 26 26 H 0.97003 * 120.00829 * 180.02562 * 7 6 4 27 27 H 1.00895 * 110.99924 * 151.04880 * 12 2 1 28 28 H 1.09000 * 109.47145 * 299.99830 * 13 12 2 29 29 H 1.09003 * 109.46993 * 59.99915 * 13 12 2 30 30 H 0.96703 * 114.00256 * 299.99829 * 15 14 13 31 31 H 1.08996 * 109.46984 * 300.00089 * 16 14 13 32 32 H 1.08999 * 109.46950 * 59.99982 * 16 14 13 33 33 H 1.09000 * 109.46743 * 180.02562 * 17 16 14 34 34 H 1.09004 * 109.46686 * 300.00016 * 17 16 14 35 35 H 1.08996 * 109.47097 * 59.99850 * 18 17 16 36 36 H 1.08995 * 109.47039 * 180.02562 * 18 17 16 37 37 H 1.09002 * 109.47145 * 48.76376 * 21 19 18 38 38 H 1.08998 * 109.47263 * 168.76378 * 21 19 18 39 39 H 1.08996 * 109.47693 * 288.76184 * 21 19 18 40 40 H 1.09000 * 109.47464 * 299.99723 * 22 14 13 41 41 H 1.09002 * 109.46847 * 60.00204 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3157 -1.1245 -4.0079 9 1 3.6225 -0.5511 -4.4187 10 1 2.4812 -2.5696 -3.7086 11 1 1.3333 -0.9564 -5.1087 12 7 2.0197 -0.6924 1.1994 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5331 3.5746 15 8 3.9432 -0.9494 3.3490 16 6 1.7163 -1.7612 3.8210 17 6 2.2293 -2.5172 5.0483 18 6 2.1774 -1.5993 6.2712 19 6 3.0561 -0.3712 6.0248 20 1 3.0195 0.2825 6.8962 21 6 4.4994 -0.8171 5.7826 22 6 2.5426 0.3852 4.7972 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.7089 1.1613 -3.4845 27 1 2.9173 -1.1204 1.0288 28 1 2.7588 1.0463 2.1183 29 1 1.0870 0.6163 2.5525 30 1 4.0517 -1.5354 2.5874 31 1 0.6880 -1.4435 3.9931 32 1 1.7536 -2.4153 2.9499 33 1 1.6035 -3.3924 5.2235 34 1 3.2576 -2.8349 4.8757 35 1 1.1491 -1.2817 6.4437 36 1 2.5433 -2.1378 7.1454 37 1 4.5129 -1.6196 5.0451 38 1 5.0830 0.0260 5.4129 39 1 4.9307 -1.1755 6.7173 40 1 3.1686 1.2601 4.6217 41 1 1.5142 0.7028 4.9693 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219418337.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:25 Heat of formation + Delta-G solvation = -73.863165 kcal Electronic energy + Delta-G solvation = -18615.265929 eV Core-core repulsion = 15914.956156 eV Total energy + Delta-G solvation = -2700.309773 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.80310 -36.08990 -34.77304 -32.57014 -31.47113 -30.50805 -28.07945 -26.39474 -25.33652 -24.01990 -22.25634 -20.64403 -19.67566 -18.65769 -16.92486 -16.13462 -15.67930 -14.82199 -14.45041 -14.17884 -14.15393 -13.63443 -13.21637 -13.01702 -12.73578 -12.39028 -11.97887 -11.91105 -11.68275 -11.49324 -11.25782 -10.95663 -10.87046 -10.79600 -10.66098 -10.37944 -10.33586 -10.22174 -10.14881 -10.03863 -9.60191 -9.15586 -8.81716 -8.49206 -7.31369 -6.04640 -4.11453 3.28042 3.34899 3.38322 4.37951 4.48552 4.78896 4.88663 5.04551 5.20036 5.28053 5.30994 5.47558 5.54381 5.61123 5.70184 5.80126 5.87009 5.98787 6.05828 6.10047 6.16910 6.21871 6.28226 6.34133 6.43680 6.52756 6.59934 6.67451 6.85754 6.87611 7.11438 7.20689 7.46858 7.74930 7.85959 7.99436 8.23883 8.32743 8.62086 8.98327 9.54689 11.01659 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.043242 B = 0.005275 C = 0.005146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.356662 B = 5307.150098 C = 5439.644533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.212 3.788 3 H 0.000 1.000 4 C -0.519 4.519 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.684 5.684 13 C 0.034 3.966 14 C 0.140 3.860 15 O -0.553 6.553 16 C -0.131 4.131 17 C -0.120 4.120 18 C -0.114 4.114 19 C -0.085 4.085 20 H 0.059 0.941 21 C -0.146 4.146 22 C -0.100 4.100 23 H 0.080 0.920 24 H 0.031 0.969 25 H 0.003 0.997 26 H 0.261 0.739 27 H 0.325 0.675 28 H 0.025 0.975 29 H 0.068 0.932 30 H 0.369 0.631 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.090 0.910 38 H 0.048 0.952 39 H 0.032 0.968 40 H 0.064 0.936 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.917 -3.310 14.799 15.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.105 3.895 3 H 0.017 0.983 4 C -0.557 4.557 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.198 1.198 11 H -0.212 1.212 12 N -0.315 5.315 13 C -0.096 4.096 14 C 0.099 3.901 15 O -0.360 6.360 16 C -0.169 4.169 17 C -0.157 4.157 18 C -0.151 4.151 19 C -0.104 4.104 20 H 0.077 0.923 21 C -0.203 4.203 22 C -0.138 4.138 23 H 0.098 0.902 24 H 0.050 0.950 25 H 0.022 0.978 26 H 0.071 0.929 27 H 0.142 0.858 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.217 0.783 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.083 0.917 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.299 -3.060 15.340 15.811 hybrid contribution 0.801 -0.051 -1.642 1.828 sum 3.101 -3.111 13.698 14.385 Atomic orbital electron populations 1.21702 0.97880 0.99284 0.99293 1.19088 0.92578 0.92312 0.85530 0.98252 1.21244 1.31507 1.12501 0.90468 0.92253 1.24923 0.95011 0.94992 0.99078 1.69895 1.36541 1.22934 1.23483 0.86522 0.78446 0.80068 0.82502 1.20765 1.19842 1.21210 1.60797 1.31365 1.33159 1.06220 1.22576 1.00229 0.94720 0.92098 1.21192 0.81904 0.93453 0.93549 1.86632 1.27310 1.70018 1.52039 1.22014 0.99157 0.97484 0.98247 1.21568 1.01649 0.97625 0.94853 1.21562 0.99311 0.96435 0.97804 1.21013 0.96205 0.96267 0.96896 0.92257 1.22053 0.94612 1.03122 1.00480 1.21579 1.01168 0.97655 0.93419 0.90161 0.94983 0.97803 0.92914 0.85808 0.95648 0.91317 0.78312 0.91785 0.90055 0.92779 0.91280 0.92512 0.92650 0.89211 0.93250 0.94908 0.91711 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.05 9.19 37.16 0.34 -2.71 16 2 C 0.21 5.32 2.60 -68.86 -0.18 5.14 16 3 H 0.00 0.00 7.80 -51.93 -0.40 -0.41 16 4 C -0.52 -14.04 8.59 -34.44 -0.30 -14.33 16 5 H 0.06 1.57 7.62 -52.49 -0.40 1.17 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.40 11.32 55.43 0.63 -24.77 16 8 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 N -0.68 -13.84 5.32 -107.95 -0.57 -14.41 16 13 C 0.03 0.61 4.69 -3.82 -0.02 0.59 16 14 C 0.14 2.00 0.79 -90.62 -0.07 1.93 16 15 O -0.55 -7.81 8.76 -35.23 -0.31 -8.12 16 16 C -0.13 -1.81 4.70 -26.73 -0.13 -1.94 16 17 C -0.12 -1.42 5.59 -26.73 -0.15 -1.57 16 18 C -0.11 -1.26 5.45 -26.73 -0.15 -1.41 16 19 C -0.09 -1.00 3.20 -90.59 -0.29 -1.29 16 20 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 21 C -0.15 -1.77 7.81 37.16 0.29 -1.48 16 22 C -0.10 -1.31 4.59 -26.70 -0.12 -1.44 16 23 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.32 6.30 6.81 -39.29 -0.27 6.03 16 28 H 0.03 0.49 8.06 -51.93 -0.42 0.07 16 29 H 0.07 1.26 7.44 -51.93 -0.39 0.87 16 30 H 0.37 4.76 7.62 45.56 0.35 5.11 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.24 7.47 -51.93 -0.39 0.85 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.83 5.94 -51.93 -0.31 0.52 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 1.15 3.79 -51.93 -0.20 0.96 16 38 H 0.05 0.64 8.09 -51.93 -0.42 0.22 16 39 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 304.49 15.07 4.59 4.59 Total: -1.00 -27.83 304.49 -8.03 -35.86 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -6.48 Total: 7.65 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -0.86 Total: -16.90 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.05 Total: -39.18 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -0.31 Total: -8.12 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.83 -8.03 -35.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219418337.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.999 kcal (2) G-P(sol) polarization free energy of solvation -27.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds