Wall clock time and date at job start Mon Mar 30 2020 04:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47257 * 2 1 4 4 H 1.09005 * 109.47276 * 305.67901 * 3 2 1 5 5 C 1.50692 * 109.47252 * 185.67793 * 3 2 1 6 6 H 1.07999 * 120.00485 * 240.00089 * 5 3 2 7 7 C 1.37883 * 120.00173 * 59.99999 * 5 3 2 8 8 N 1.31516 * 120.00409 * 179.97438 * 7 5 3 9 9 Si 1.86806 * 119.99849 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47258 * 270.00190 * 9 7 5 11 11 H 1.48503 * 109.46990 * 30.00373 * 9 7 5 12 12 H 1.48503 * 109.46958 * 149.99622 * 9 7 5 13 13 N 1.46897 * 109.47287 * 65.67788 * 3 2 1 14 14 C 1.46897 * 111.00121 * 202.50040 * 13 3 2 15 15 C 1.53002 * 109.47030 * 185.95219 * 14 13 3 16 16 C 1.52998 * 109.46947 * 294.99449 * 15 14 13 17 17 C 1.53002 * 109.46947 * 179.97438 * 16 15 14 18 18 C 1.52995 * 109.47291 * 60.00510 * 17 16 15 19 19 O 1.42901 * 109.47080 * 59.99790 * 18 17 16 20 20 C 1.53000 * 109.46837 * 300.00001 * 18 17 16 21 21 C 1.53001 * 109.47551 * 59.99980 * 20 18 17 22 22 H 1.09003 * 109.47043 * 54.06652 * 1 2 3 23 23 H 1.09001 * 109.47309 * 174.06495 * 1 2 3 24 24 H 1.09004 * 109.47350 * 294.06888 * 1 2 3 25 25 H 1.08997 * 109.46834 * 240.00159 * 2 1 3 26 26 H 1.08994 * 109.47130 * 119.99821 * 2 1 3 27 27 H 0.96996 * 119.99891 * 179.97438 * 8 7 5 28 28 H 1.00904 * 110.99590 * 326.45106 * 13 3 2 29 29 H 1.09001 * 109.47034 * 305.95010 * 14 13 3 30 30 H 1.09003 * 109.47584 * 65.94919 * 14 13 3 31 31 H 1.08999 * 109.47245 * 54.99896 * 15 14 13 32 32 H 1.08999 * 109.47513 * 300.00283 * 16 15 14 33 33 H 1.08998 * 109.47082 * 60.00689 * 16 15 14 34 34 H 1.08999 * 109.47245 * 300.00447 * 17 16 15 35 35 H 1.09003 * 109.47109 * 180.02562 * 17 16 15 36 36 H 1.08994 * 109.47596 * 179.97438 * 18 17 16 37 37 H 0.96698 * 114.00187 * 59.99990 * 19 18 17 38 38 H 1.08999 * 109.47151 * 299.99726 * 20 18 17 39 39 H 1.09011 * 109.47250 * 179.97438 * 20 18 17 40 40 H 1.08990 * 109.47355 * 179.97438 * 21 20 18 41 41 H 1.08999 * 109.47100 * 59.99716 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5960 1.9849 -0.8348 5 6 3.5404 1.4448 -0.1406 6 1 4.1543 1.8863 0.6305 7 6 4.1294 0.8833 -1.2536 8 7 5.4388 0.8857 -1.3766 9 14 3.0676 0.1190 -2.5870 10 1 2.8501 -1.3183 -2.2835 11 1 1.7582 0.8177 -2.6382 12 1 3.7502 0.2501 -3.8993 13 7 1.6655 2.0943 1.2620 14 6 1.6426 3.5556 1.1133 15 6 1.3955 4.2032 2.4773 16 6 -0.0007 3.8253 2.9758 17 6 -0.2476 4.4724 4.3401 18 6 -0.1475 5.9934 4.2087 19 8 -1.1274 6.4566 3.2775 20 6 1.2487 6.3714 3.7101 21 6 1.4956 5.7243 2.3458 22 1 -0.3633 0.6031 -0.8321 23 1 -0.3634 -1.0221 -0.1063 24 1 -0.3634 0.4191 0.9383 25 1 1.8932 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 5.8531 0.4904 -2.1594 28 1 0.7776 1.7510 1.5967 29 1 2.5997 3.8956 0.7177 30 1 0.8445 3.8385 0.4268 31 1 2.1429 3.8504 3.1878 32 1 -0.7482 4.1782 2.2653 33 1 -0.0719 2.7417 3.0700 34 1 0.4999 4.1191 5.0504 35 1 -1.2421 4.2028 4.6956 36 1 -0.3238 6.4545 5.1805 37 1 -2.0380 6.2513 3.5301 38 1 1.9962 6.0181 4.4204 39 1 1.3200 7.4551 3.6160 40 1 2.4901 5.9940 1.9904 41 1 0.7482 6.0776 1.6355 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227772178.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:59 Heat of formation + Delta-G solvation = -74.029244 kcal Electronic energy + Delta-G solvation = -18289.739463 eV Core-core repulsion = 15589.422489 eV Total energy + Delta-G solvation = -2700.316975 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.25959 -36.80299 -35.14811 -32.40591 -31.75372 -30.70319 -29.41696 -26.99950 -24.25682 -22.66191 -22.35314 -20.66342 -19.77037 -19.45248 -16.92883 -16.68822 -15.79590 -15.25649 -14.77318 -14.56242 -14.02568 -13.56215 -13.32883 -13.14341 -12.83246 -12.53592 -12.35289 -12.13712 -12.05852 -11.71492 -11.46400 -11.17468 -11.13073 -10.83840 -10.74209 -10.35927 -10.26656 -10.11705 -9.93441 -9.73991 -9.59786 -9.32400 -9.13576 -8.48220 -7.28302 -6.00168 -3.96521 3.28305 3.39186 3.40951 4.20436 4.44344 4.76192 4.78137 4.91563 5.04954 5.28387 5.31991 5.46286 5.53862 5.61235 5.63658 5.66515 5.76217 5.84706 5.92861 5.99246 6.02594 6.08493 6.19841 6.30384 6.35644 6.40438 6.48843 6.51668 6.66493 6.68917 6.78355 6.85266 6.91231 7.25446 7.58593 7.76661 8.06190 8.34932 8.82618 9.12094 9.63421 11.13365 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034522 B = 0.005694 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.877500 B = 4916.347030 C = 5365.374875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.134 4.134 3 C 0.189 3.811 4 H -0.002 1.002 5 C -0.494 4.494 6 H 0.080 0.920 7 C 0.065 3.935 8 N -0.902 5.902 9 Si 0.882 3.118 10 H -0.279 1.279 11 H -0.268 1.268 12 H -0.298 1.298 13 N -0.675 5.675 14 C 0.073 3.927 15 C -0.082 4.082 16 C -0.109 4.109 17 C -0.150 4.150 18 C 0.105 3.895 19 O -0.563 6.563 20 C -0.110 4.110 21 C -0.110 4.110 22 H 0.045 0.955 23 H 0.044 0.956 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.262 0.738 28 H 0.316 0.684 29 H 0.078 0.922 30 H 0.013 0.987 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.372 0.628 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.254 7.477 9.932 18.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.172 4.172 3 C 0.080 3.920 4 H 0.015 0.985 5 C -0.532 4.532 6 H 0.098 0.902 7 C -0.135 4.135 8 N -0.542 5.542 9 Si 0.713 3.287 10 H -0.206 1.206 11 H -0.193 1.193 12 H -0.225 1.225 13 N -0.306 5.306 14 C -0.057 4.057 15 C -0.101 4.101 16 C -0.147 4.147 17 C -0.188 4.188 18 C 0.047 3.953 19 O -0.368 6.368 20 C -0.148 4.148 21 C -0.148 4.148 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.134 0.866 29 H 0.096 0.904 30 H 0.031 0.969 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.218 0.782 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.911 7.622 9.745 17.173 hybrid contribution -1.760 -0.694 -1.003 2.141 sum -13.671 6.928 8.741 17.644 Atomic orbital electron populations 1.21909 0.98273 1.00473 1.00709 1.22090 0.92889 1.00491 1.01708 1.19606 0.96830 0.89257 0.86322 0.98474 1.21041 0.89189 1.37272 1.05718 0.90170 1.24965 0.94753 0.96052 0.97765 1.69889 1.08931 1.46039 1.29295 0.86941 0.80784 0.79747 0.81230 1.20625 1.19346 1.22545 1.60508 1.34197 1.03655 1.32256 1.21856 1.00646 0.88987 0.94225 1.21170 0.96641 0.94159 0.98160 1.21485 0.97624 0.99851 0.95715 1.22230 1.01604 0.96002 0.98946 1.21794 0.89544 0.92962 0.91046 1.86545 1.18103 1.81760 1.50360 1.21532 0.94214 1.00629 0.98414 1.21458 1.01723 0.95079 0.96560 0.93629 0.93668 0.93181 0.92911 0.91360 0.92795 0.86638 0.90373 0.96908 0.90641 0.92023 0.91875 0.91063 0.92340 0.93453 0.78223 0.90765 0.91777 0.91922 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.63 37.16 0.36 -2.37 16 2 C -0.13 -2.92 5.03 -26.73 -0.13 -3.06 16 3 C 0.19 4.51 1.61 -68.87 -0.11 4.39 16 4 H 0.00 -0.06 6.96 -51.93 -0.36 -0.42 16 5 C -0.49 -14.12 8.99 -34.44 -0.31 -14.43 16 6 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 7 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 8 N -0.90 -28.05 13.96 55.43 0.77 -27.27 16 9 Si 0.88 22.28 24.41 -169.99 -4.15 18.13 16 10 H -0.28 -6.85 6.82 56.52 0.39 -6.46 16 11 H -0.27 -6.53 6.53 56.52 0.37 -6.16 16 12 H -0.30 -7.55 7.11 56.52 0.40 -7.14 16 13 N -0.68 -13.88 6.23 -107.95 -0.67 -14.55 16 14 C 0.07 1.36 4.92 -3.82 -0.02 1.34 16 15 C -0.08 -1.24 2.40 -90.62 -0.22 -1.46 16 16 C -0.11 -1.41 4.82 -26.73 -0.13 -1.54 16 17 C -0.15 -1.56 5.64 -26.73 -0.15 -1.71 16 18 C 0.11 1.09 3.77 -26.73 -0.10 0.99 16 19 O -0.56 -6.13 11.97 -35.23 -0.42 -6.55 16 20 C -0.11 -1.26 5.66 -26.73 -0.15 -1.41 16 21 C -0.11 -1.51 5.06 -26.73 -0.14 -1.65 16 22 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.77 6.66 -51.93 -0.35 0.43 16 25 H 0.05 1.23 3.21 -51.93 -0.17 1.07 16 26 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 27 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 28 H 0.32 5.73 5.10 -39.29 -0.20 5.53 16 29 H 0.08 1.67 7.80 -51.93 -0.40 1.26 16 30 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 0.82 7.68 -51.93 -0.40 0.43 16 33 H 0.06 0.84 6.82 -51.93 -0.35 0.49 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.37 2.56 9.08 45.56 0.41 2.98 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.98 7.68 -51.93 -0.40 0.58 16 LS Contribution 306.94 15.07 4.63 4.63 Total: -1.00 -31.36 306.94 -7.52 -38.87 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -6.47 Total: 5.83 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: -1.20 Total: -19.09 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.10 Total: -41.82 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.42 Total: -6.55 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.15 Total: 18.13 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.36 -7.52 -38.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227772178.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.155 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds