Wall clock time and date at job start Mon Mar 30 2020 03:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09007 * 109.50399 * 305.00472 * 3 2 1 5 5 C 1.53038 * 109.50246 * 65.07853 * 3 2 1 6 6 N 1.46840 * 109.52609 * 179.11997 * 5 3 2 7 7 C 1.46907 * 111.00316 * 174.15802 * 6 5 3 8 8 C 1.52995 * 109.47303 * 190.00130 * 7 6 5 9 9 C 1.52998 * 109.46927 * 180.02562 * 8 7 6 10 10 C 1.50705 * 109.47208 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99798 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99868 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99543 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 120.00272 * 359.97438 * 12 10 9 15 15 H 1.48505 * 109.46922 * 90.00400 * 14 12 10 16 16 H 1.48500 * 109.47286 * 209.99936 * 14 12 10 17 17 H 1.48499 * 109.47126 * 330.00094 * 14 12 10 18 18 C 1.46845 * 111.19985 * 298.26111 * 6 5 3 19 19 C 1.53029 * 109.52458 * 61.74143 * 18 6 5 20 20 C 1.53120 * 109.31004 * 300.84117 * 19 18 6 21 21 H 1.09000 * 109.49074 * 297.71175 * 20 19 18 22 22 O 1.42905 * 109.56109 * 177.51708 * 20 19 18 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 27 27 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 28 28 H 1.09007 * 109.46542 * 299.14160 * 5 3 2 29 29 H 1.08998 * 109.46282 * 59.11562 * 5 3 2 30 30 H 1.08996 * 109.47242 * 310.00672 * 7 6 5 31 31 H 1.09005 * 109.46282 * 70.00528 * 7 6 5 32 32 H 1.09003 * 109.47197 * 300.00145 * 8 7 6 33 33 H 1.08996 * 109.47210 * 60.00655 * 8 7 6 34 34 H 1.09007 * 109.47342 * 299.99815 * 9 8 7 35 35 H 1.09000 * 109.47587 * 60.00025 * 9 8 7 36 36 H 0.97004 * 119.99858 * 180.02562 * 13 12 10 37 37 H 1.09008 * 109.46470 * 181.75626 * 18 6 5 38 38 H 1.08997 * 109.46121 * 301.73151 * 18 6 5 39 39 H 1.08999 * 109.50464 * 60.75967 * 19 18 6 40 40 H 1.08998 * 109.50662 * 180.84290 * 19 18 6 41 41 H 0.96704 * 113.99464 * 60.29573 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6056 1.9821 -0.8416 5 6 1.6372 2.1268 1.3083 6 7 2.1446 3.5047 1.3178 7 6 1.6600 4.2361 2.4961 8 6 1.9963 5.7213 2.3484 9 6 1.4922 6.4828 3.5759 10 6 1.8229 7.9459 3.4302 11 1 2.3412 8.2974 2.5503 12 6 1.4637 8.8358 4.4203 13 7 1.7518 10.1126 4.2928 14 14 0.5665 8.2280 5.9418 15 1 1.5564 7.8526 6.9832 16 1 -0.3135 9.3056 6.4610 17 1 -0.2565 7.0429 5.5909 18 6 3.6112 3.5311 1.2485 19 6 4.0729 2.8888 -0.0615 20 6 3.5662 1.4452 -0.1238 21 1 3.9992 0.8721 0.6961 22 8 3.9451 0.8585 -1.3706 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 0.5505 2.1393 1.3921 29 1 2.0600 1.5785 2.1501 30 1 0.5801 4.1147 2.5803 31 1 2.1409 3.8419 3.3914 32 1 3.0763 5.8427 2.2643 33 1 1.5155 6.1155 1.4532 34 1 0.4122 6.3616 3.6605 35 1 1.9732 6.0887 4.4711 36 1 1.4995 10.7386 4.9895 37 1 3.9582 4.5637 1.2888 38 1 4.0246 2.9760 2.0905 39 1 3.6711 3.4515 -0.9042 40 1 5.1619 2.8950 -0.1059 41 1 4.9006 0.8273 -1.5163 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229836193.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:20 Heat of formation + Delta-G solvation = -76.471389 kcal Electronic energy + Delta-G solvation = -17819.129012 eV Core-core repulsion = 15118.706138 eV Total energy + Delta-G solvation = -2700.422874 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.68170 -36.75332 -34.94306 -33.66961 -32.11355 -30.76011 -29.08572 -26.85507 -24.27839 -23.77618 -21.98562 -20.98190 -19.92561 -19.71958 -17.45714 -16.68544 -15.88327 -15.37001 -14.96051 -14.45543 -14.21331 -13.87927 -13.77638 -13.73630 -13.06217 -12.96043 -12.52951 -12.18633 -12.09674 -11.74915 -11.72307 -11.38384 -11.27959 -10.95634 -10.93254 -10.69514 -10.62807 -10.23619 -9.97096 -9.88528 -9.62802 -9.51401 -9.14422 -8.51758 -8.13743 -6.02152 -3.99765 3.31384 3.38861 3.42729 3.95928 4.08037 4.46890 4.53737 4.67561 4.86733 5.04249 5.13766 5.21673 5.29884 5.31781 5.34977 5.43772 5.52243 5.60141 5.68011 5.76528 5.80229 5.83948 5.94443 5.96129 6.04696 6.13213 6.17719 6.20236 6.32265 6.56639 6.59526 6.92684 7.26906 7.27368 7.38976 7.47925 7.48404 7.82569 8.57283 9.03484 9.60592 11.11489 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.037683 B = 0.004451 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.858505 B = 6289.763778 C = 6810.752447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.076 4.076 4 H 0.086 0.914 5 C 0.060 3.940 6 N -0.539 5.539 7 C 0.054 3.946 8 C -0.098 4.098 9 C -0.014 4.014 10 C -0.518 4.518 11 H 0.071 0.929 12 C 0.065 3.935 13 N -0.905 5.905 14 Si 0.880 3.120 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.266 1.266 18 C 0.054 3.946 19 C -0.148 4.148 20 C 0.108 3.892 21 H 0.049 0.951 22 O -0.566 6.566 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.029 0.971 30 H 0.070 0.930 31 H 0.028 0.972 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.015 0.985 35 H 0.008 0.992 36 H 0.262 0.738 37 H 0.088 0.912 38 H 0.029 0.971 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.426 -20.819 -7.637 22.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.095 4.095 4 H 0.104 0.896 5 C -0.068 4.068 6 N -0.263 5.263 7 C -0.073 4.073 8 C -0.135 4.135 9 C -0.051 4.051 10 C -0.556 4.556 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.544 5.544 14 Si 0.708 3.292 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.190 1.190 18 C -0.074 4.074 19 C -0.186 4.186 20 C 0.050 3.950 21 H 0.067 0.933 22 O -0.371 6.371 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.048 0.952 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.034 0.966 35 H 0.027 0.973 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.048 0.952 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 1.568 -20.462 -8.016 22.032 hybrid contribution 0.530 -0.433 1.741 1.870 sum 2.098 -20.895 -6.276 21.918 Atomic orbital electron populations 1.21825 0.95819 1.01353 1.02119 1.21485 0.95824 0.95845 1.02126 1.21190 0.93145 0.96197 0.98930 0.89585 1.22156 1.00594 0.88546 0.95478 1.61958 1.08944 1.13322 1.42091 1.22305 0.99828 0.95849 0.89292 1.21484 1.00573 0.91043 1.00449 1.19558 0.96095 0.96220 0.93270 1.21150 1.37703 0.90347 1.06397 0.91041 1.25039 0.95513 0.94759 0.98260 1.69922 1.47783 1.02250 1.34463 0.86771 0.80246 0.78727 0.83479 1.20396 1.21403 1.19038 1.22076 0.88037 1.01727 0.95562 1.22317 1.00208 0.96580 0.99533 1.21889 0.95510 0.92225 0.85416 0.93337 1.86508 1.28060 1.83571 1.38975 0.92526 0.92990 0.92562 0.92541 0.91088 0.90040 0.95241 0.91147 0.95396 0.92894 0.91911 0.96636 0.97346 0.92791 0.89390 0.95241 0.90128 0.91527 0.77887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.67 37.16 0.36 -1.03 16 2 C -0.11 -1.13 5.34 -26.73 -0.14 -1.27 16 3 C -0.08 -0.85 2.07 -90.54 -0.19 -1.04 16 4 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 5 C 0.06 0.74 4.48 -3.84 -0.02 0.72 16 6 N -0.54 -7.86 4.66 -234.67 -1.09 -8.95 16 7 C 0.05 0.90 4.96 -3.82 -0.02 0.88 16 8 C -0.10 -1.96 5.08 -26.73 -0.14 -2.10 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 10 C -0.52 -15.00 9.66 -34.44 -0.33 -15.33 16 11 H 0.07 2.22 7.99 -52.48 -0.42 1.81 16 12 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 13 N -0.90 -28.26 13.96 55.43 0.77 -27.49 16 14 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 17 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 18 C 0.05 0.72 5.29 -3.84 -0.02 0.70 16 19 C -0.15 -1.65 5.72 -26.65 -0.15 -1.80 16 20 C 0.11 1.15 2.95 -26.61 -0.08 1.07 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 22 O -0.57 -5.72 12.68 -35.23 -0.45 -6.16 16 23 H 0.06 0.51 6.59 -51.93 -0.34 0.17 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.73 7.62 -51.93 -0.40 0.34 16 28 H 0.08 0.98 6.49 -51.93 -0.34 0.64 16 29 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 1.14 7.99 -51.93 -0.41 0.72 16 31 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 32 H 0.05 1.06 6.43 -51.93 -0.33 0.73 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 35 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.09 1.28 6.21 -51.92 -0.32 0.95 16 38 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.37 2.26 9.09 45.56 0.41 2.67 16 LS Contribution 315.28 15.07 4.75 4.75 Total: -1.00 -31.45 315.28 -8.36 -39.81 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -6.73 Total: -1.43 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -0.94 Total: -17.81 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: -0.32 Total: -36.44 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: -0.45 Total: -6.16 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.45 -8.36 -39.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229836193.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.666 kcal (2) G-P(sol) polarization free energy of solvation -31.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds