Wall clock time and date at job start Mon Mar 30 2020 04:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47253 * 2 1 4 4 H 1.09001 * 109.47145 * 55.00403 * 3 2 1 5 5 C 1.50700 * 109.47095 * 174.99950 * 3 2 1 6 6 H 1.07997 * 120.00316 * 120.00404 * 5 3 2 7 7 C 1.37876 * 119.99947 * 300.00240 * 5 3 2 8 8 N 1.31521 * 119.99894 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 120.00294 * 0.02562 * 7 5 3 10 10 H 1.48501 * 109.47109 * 89.99972 * 9 7 5 11 11 H 1.48499 * 109.47480 * 209.99982 * 9 7 5 12 12 H 1.48506 * 109.46880 * 329.99972 * 9 7 5 13 13 N 1.46895 * 109.47405 * 294.99942 * 3 2 1 14 14 C 1.46847 * 110.99982 * 174.99705 * 13 3 2 15 15 C 1.53034 * 109.51345 * 185.84805 * 14 13 3 16 16 C 1.53123 * 109.27992 * 300.80438 * 15 14 13 17 17 C 1.52996 * 109.57495 * 177.60435 * 16 15 14 18 18 H 1.09002 * 109.47171 * 185.30123 * 17 16 15 19 19 C 1.52992 * 109.47303 * 65.29668 * 17 16 15 20 20 O 1.42908 * 109.47240 * 305.29508 * 17 16 15 21 21 C 1.53127 * 109.15019 * 57.67185 * 16 15 14 22 22 C 1.46843 * 110.99970 * 299.21070 * 13 3 2 23 23 H 1.09005 * 109.47127 * 299.99690 * 1 2 3 24 24 H 1.09004 * 109.47211 * 59.99879 * 1 2 3 25 25 H 1.09004 * 109.47443 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46641 * 239.99716 * 2 1 3 27 27 H 1.08996 * 109.47064 * 120.00769 * 2 1 3 28 28 H 0.97001 * 120.00229 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.46481 * 305.85957 * 14 13 3 30 30 H 1.08994 * 109.46283 * 65.83811 * 14 13 3 31 31 H 1.08997 * 109.50952 * 60.75924 * 15 14 13 32 32 H 1.08998 * 109.50459 * 180.87821 * 15 14 13 33 33 H 1.09003 * 109.53012 * 297.76758 * 16 15 14 34 34 H 1.09002 * 109.47178 * 60.00148 * 19 17 16 35 35 H 1.09008 * 109.47094 * 179.97438 * 19 17 16 36 36 H 1.08991 * 109.47165 * 299.99880 * 19 17 16 37 37 H 0.96696 * 113.99714 * 59.99835 * 20 17 16 38 38 H 1.08997 * 109.49981 * 182.39822 * 21 16 15 39 39 H 1.08998 * 109.53089 * 62.30397 * 21 16 15 40 40 H 1.08993 * 109.46313 * 294.17341 * 22 13 3 41 41 H 1.09000 * 109.46480 * 54.15451 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6522 7 6 4.1432 0.8782 1.2280 8 7 5.4540 0.8793 1.3358 9 14 3.0964 0.1086 2.5700 10 1 2.8756 -1.3275 2.2632 11 1 3.7936 0.2344 3.8751 12 1 1.7876 0.8071 2.6386 13 7 1.6514 2.0992 -1.2552 14 6 2.0207 3.5205 -1.2417 15 6 1.4733 4.2028 -2.4973 16 6 2.0526 3.5177 -3.7383 17 6 1.4636 4.1558 -4.9979 18 1 1.8035 3.6069 -5.8762 19 6 1.9252 5.6112 -5.0960 20 8 0.0368 4.1120 -4.9316 21 6 1.6948 2.0293 -3.7034 22 6 2.2355 1.4098 -2.4126 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 5.8771 0.4815 2.1127 29 1 1.5993 3.9969 -0.3565 30 1 3.1065 3.6134 -1.2219 31 1 0.3864 4.1222 -2.5110 32 1 1.7608 5.2542 -2.4949 33 1 3.1366 3.6318 -3.7449 34 1 3.0135 5.6446 -5.1466 35 1 1.5059 6.0656 -5.9937 36 1 1.5853 6.1600 -4.2178 37 1 -0.3363 4.5813 -4.1729 38 1 2.1404 1.5277 -4.5624 39 1 0.6114 1.9140 -3.7364 40 1 3.3203 1.5126 -2.3872 41 1 1.9699 0.3532 -2.3781 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233866290.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:18 Heat of formation + Delta-G solvation = -61.816884 kcal Electronic energy + Delta-G solvation = -18885.616359 eV Core-core repulsion = 16185.828953 eV Total energy + Delta-G solvation = -2699.787407 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.31127 -37.22907 -34.38120 -32.10594 -31.54963 -30.40230 -29.44326 -26.97196 -24.40561 -22.97777 -22.05660 -21.31804 -19.60382 -18.95997 -16.65381 -16.51027 -15.63349 -15.25454 -14.46581 -14.21900 -14.11928 -13.68166 -13.39992 -12.96152 -12.74056 -12.52667 -12.08166 -12.01946 -11.85697 -11.73658 -11.39601 -11.04478 -11.01866 -10.83013 -10.58469 -10.53079 -10.24393 -10.11500 -9.91060 -9.57806 -9.54113 -9.28591 -9.17596 -8.56710 -7.11482 -6.12456 -4.12796 3.25308 3.36305 3.38580 4.36956 4.45458 4.82769 4.92247 5.02522 5.14313 5.19545 5.35059 5.47995 5.61983 5.81296 5.85680 5.95134 5.99373 6.01241 6.04714 6.08916 6.17918 6.23225 6.30566 6.42585 6.46649 6.51297 6.61038 6.70234 6.75102 6.84350 6.92830 6.98045 7.12764 7.27076 7.58094 7.72333 8.13607 8.21082 8.45283 8.89924 9.51508 11.00397 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034828 B = 0.006882 C = 0.006284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.768583 B = 4067.805296 C = 4454.701715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.123 4.123 3 C 0.181 3.819 4 H 0.037 0.963 5 C -0.543 4.543 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.899 5.899 9 Si 0.888 3.112 10 H -0.279 1.279 11 H -0.299 1.299 12 H -0.264 1.264 13 N -0.524 5.524 14 C 0.064 3.936 15 C -0.113 4.113 16 C -0.118 4.118 17 C 0.107 3.893 18 H 0.093 0.907 19 C -0.186 4.186 20 O -0.564 6.564 21 C -0.106 4.106 22 C 0.058 3.942 23 H 0.041 0.959 24 H 0.062 0.938 25 H 0.032 0.968 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.263 0.737 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.372 0.628 38 H 0.053 0.947 39 H 0.069 0.931 40 H 0.040 0.960 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.425 5.565 -8.882 13.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.160 4.160 3 C 0.073 3.927 4 H 0.055 0.945 5 C -0.582 4.582 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.227 1.227 12 H -0.189 1.189 13 N -0.248 5.248 14 C -0.064 4.064 15 C -0.151 4.151 16 C -0.137 4.137 17 C 0.048 3.952 18 H 0.111 0.889 19 C -0.244 4.244 20 O -0.370 6.370 21 C -0.144 4.144 22 C -0.070 4.070 23 H 0.060 0.940 24 H 0.081 0.919 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.220 0.780 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.059 0.941 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.705 5.143 -9.353 13.774 hybrid contribution 0.686 -0.148 1.468 1.627 sum -8.020 4.995 -7.885 12.306 Atomic orbital electron populations 1.21735 0.97358 0.99324 1.01661 1.21955 0.94074 0.99398 1.00613 1.19699 0.94427 0.90485 0.88109 0.94493 1.21633 0.90715 1.38824 1.06987 0.90694 1.24993 0.94722 0.95360 0.97890 1.69920 1.08848 1.45200 1.29731 0.86846 0.80700 0.79843 0.80805 1.20561 1.22658 1.18873 1.62305 1.57981 1.01307 1.03196 1.21808 0.98877 0.89764 0.95978 1.21683 1.00559 0.98121 0.94754 1.21871 1.00482 0.96647 0.94727 1.21919 0.80625 0.94722 0.97920 0.88938 1.22536 1.02064 0.97585 1.02171 1.86532 1.20096 1.78768 1.51635 1.21593 1.01706 0.93788 0.97291 1.21959 0.97646 0.97987 0.89457 0.93991 0.91897 0.94848 0.92198 0.93608 0.92703 0.91928 0.94069 0.91736 0.92380 0.90909 0.91725 0.92381 0.92052 0.77953 0.92806 0.91247 0.94134 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.80 37.16 0.36 -2.26 16 2 C -0.12 -2.66 4.72 -26.74 -0.13 -2.78 16 3 C 0.18 4.16 1.34 -68.87 -0.09 4.07 16 4 H 0.04 0.90 7.14 -51.93 -0.37 0.53 16 5 C -0.54 -14.71 7.77 -34.44 -0.27 -14.98 16 6 H 0.08 2.22 6.08 -52.49 -0.32 1.90 16 7 C 0.07 2.06 5.45 -17.82 -0.10 1.97 16 8 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 9 Si 0.89 21.88 24.41 -169.99 -4.15 17.73 16 10 H -0.28 -6.74 6.83 56.52 0.39 -6.35 16 11 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 12 H -0.26 -6.25 6.53 56.52 0.37 -5.88 16 13 N -0.52 -10.38 4.10 -228.09 -0.93 -11.31 16 14 C 0.06 1.18 5.12 -3.84 -0.02 1.16 16 15 C -0.11 -1.59 4.72 -26.65 -0.13 -1.72 16 16 C -0.12 -1.63 2.09 -90.49 -0.19 -1.82 16 17 C 0.11 1.26 3.34 -26.74 -0.09 1.17 16 18 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 19 C -0.19 -1.87 9.30 37.15 0.35 -1.53 16 20 O -0.56 -7.08 12.74 -35.23 -0.45 -7.53 16 21 C -0.11 -1.63 5.30 -26.64 -0.14 -1.77 16 22 C 0.06 1.09 4.80 -3.83 -0.02 1.07 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.06 1.11 7.75 -51.93 -0.40 0.71 16 25 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 1.28 6.05 -51.93 -0.31 0.97 16 27 H 0.05 1.06 3.21 -51.93 -0.17 0.89 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 29 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 30 H 0.04 0.86 6.96 -51.93 -0.36 0.50 16 31 H 0.06 0.86 6.60 -51.93 -0.34 0.52 16 32 H 0.06 0.72 6.71 -51.93 -0.35 0.37 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 36 H 0.06 0.59 6.64 -51.93 -0.34 0.25 16 37 H 0.37 3.80 7.14 45.56 0.33 4.13 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.07 1.10 7.77 -51.93 -0.40 0.69 16 40 H 0.04 0.87 6.62 -51.93 -0.34 0.53 16 41 H 0.07 1.32 5.93 -51.93 -0.31 1.02 16 LS Contribution 297.40 15.07 4.48 4.48 Total: -1.00 -29.36 297.40 -7.00 -36.36 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.26 Total: 4.08 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -0.46 Total: -17.41 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: -0.16 Total: -37.72 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -0.45 Total: -7.53 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.15 Total: 17.73 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.36 -7.00 -36.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233866290.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.456 kcal (2) G-P(sol) polarization free energy of solvation -29.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds