Wall clock time and date at job start Mon Mar 30 2020 04:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47253 * 2 1 4 4 H 1.09001 * 109.47145 * 55.00403 * 3 2 1 5 5 C 1.50700 * 109.47095 * 174.99950 * 3 2 1 6 6 H 1.07997 * 120.00316 * 120.00404 * 5 3 2 7 7 C 1.37876 * 119.99947 * 300.00240 * 5 3 2 8 8 N 1.31521 * 119.99894 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 120.00294 * 0.02562 * 7 5 3 10 10 H 1.48501 * 109.47109 * 89.99972 * 9 7 5 11 11 H 1.48499 * 109.47480 * 209.99982 * 9 7 5 12 12 H 1.48506 * 109.46880 * 329.99972 * 9 7 5 13 13 N 1.46895 * 109.47405 * 294.99942 * 3 2 1 14 14 C 1.46847 * 110.99982 * 174.99705 * 13 3 2 15 15 C 1.53034 * 109.51345 * 185.84805 * 14 13 3 16 16 C 1.53123 * 109.27992 * 300.80438 * 15 14 13 17 17 C 1.52996 * 109.57495 * 177.60435 * 16 15 14 18 18 H 1.09002 * 109.47171 * 185.30123 * 17 16 15 19 19 C 1.52992 * 109.47303 * 65.29668 * 17 16 15 20 20 O 1.42908 * 109.47240 * 305.29508 * 17 16 15 21 21 C 1.53127 * 109.15019 * 57.67185 * 16 15 14 22 22 C 1.46843 * 110.99970 * 299.21070 * 13 3 2 23 23 H 1.09005 * 109.47127 * 299.99690 * 1 2 3 24 24 H 1.09004 * 109.47211 * 59.99879 * 1 2 3 25 25 H 1.09004 * 109.47443 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46641 * 239.99716 * 2 1 3 27 27 H 1.08996 * 109.47064 * 120.00769 * 2 1 3 28 28 H 0.97001 * 120.00229 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.46481 * 305.85957 * 14 13 3 30 30 H 1.08994 * 109.46283 * 65.83811 * 14 13 3 31 31 H 1.08997 * 109.50952 * 60.75924 * 15 14 13 32 32 H 1.08998 * 109.50459 * 180.87821 * 15 14 13 33 33 H 1.09003 * 109.53012 * 297.76758 * 16 15 14 34 34 H 1.09002 * 109.47178 * 60.00148 * 19 17 16 35 35 H 1.09008 * 109.47094 * 179.97438 * 19 17 16 36 36 H 1.08991 * 109.47165 * 299.99880 * 19 17 16 37 37 H 0.96696 * 113.99714 * 59.99835 * 20 17 16 38 38 H 1.08997 * 109.49981 * 182.39822 * 21 16 15 39 39 H 1.08998 * 109.53089 * 62.30397 * 21 16 15 40 40 H 1.08993 * 109.46313 * 294.17341 * 22 13 3 41 41 H 1.09000 * 109.46480 * 54.15451 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6522 7 6 4.1432 0.8782 1.2280 8 7 5.4540 0.8793 1.3358 9 14 3.0964 0.1086 2.5700 10 1 2.8756 -1.3275 2.2632 11 1 3.7936 0.2344 3.8751 12 1 1.7876 0.8071 2.6386 13 7 1.6514 2.0992 -1.2552 14 6 2.0207 3.5205 -1.2417 15 6 1.4733 4.2028 -2.4973 16 6 2.0526 3.5177 -3.7383 17 6 1.4636 4.1558 -4.9979 18 1 1.8035 3.6069 -5.8762 19 6 1.9252 5.6112 -5.0960 20 8 0.0368 4.1120 -4.9316 21 6 1.6948 2.0293 -3.7034 22 6 2.2355 1.4098 -2.4126 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 5.8771 0.4815 2.1127 29 1 1.5993 3.9969 -0.3565 30 1 3.1065 3.6134 -1.2219 31 1 0.3864 4.1222 -2.5110 32 1 1.7608 5.2542 -2.4949 33 1 3.1366 3.6318 -3.7449 34 1 3.0135 5.6446 -5.1466 35 1 1.5059 6.0656 -5.9937 36 1 1.5853 6.1600 -4.2178 37 1 -0.3363 4.5813 -4.1729 38 1 2.1404 1.5277 -4.5624 39 1 0.6114 1.9140 -3.7364 40 1 3.3203 1.5126 -2.3872 41 1 1.9699 0.3532 -2.3781 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233866290.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:18 Heat of formation + Delta-G solvation = -83.297209 kcal Electronic energy + Delta-G solvation = -18886.547816 eV Core-core repulsion = 16185.828953 eV Total energy + Delta-G solvation = -2700.718864 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.63589 -38.57474 -35.85524 -34.12493 -32.88636 -31.75768 -30.63961 -28.76876 -25.79565 -24.57123 -23.57890 -22.59847 -21.14075 -20.50046 -18.61315 -17.70294 -17.20636 -16.30791 -16.15865 -15.76449 -15.30745 -15.09171 -14.99004 -14.57838 -14.32483 -13.96852 -13.58999 -13.47317 -13.14609 -12.93802 -12.85154 -12.62930 -12.50927 -12.19941 -12.07658 -11.95638 -11.77418 -11.52898 -11.41870 -11.34986 -11.19078 -10.89815 -10.70938 -10.46935 -8.88179 -8.33393 -6.37194 1.28150 1.33305 1.43994 2.28886 3.02173 3.30934 3.55641 3.81401 3.89816 4.02281 4.27977 4.36000 4.41431 4.46741 4.49875 4.57229 4.63369 4.67412 4.75608 4.85385 4.95396 5.02117 5.03660 5.05536 5.09645 5.13740 5.20739 5.25291 5.30498 5.35403 5.42372 5.47462 5.49575 5.59604 5.65676 6.16097 6.41543 6.55707 6.72009 6.91027 7.31261 8.83150 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034828 B = 0.006882 C = 0.006284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.768583 B = 4067.805296 C = 4454.701715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.124 4.124 3 C 0.183 3.817 4 H 0.030 0.970 5 C -0.536 4.536 6 H 0.033 0.967 7 C 0.014 3.986 8 N -0.949 5.949 9 Si 0.948 3.052 10 H -0.268 1.268 11 H -0.301 1.301 12 H -0.245 1.245 13 N -0.512 5.512 14 C 0.061 3.939 15 C -0.102 4.102 16 C -0.116 4.116 17 C 0.116 3.884 18 H 0.095 0.905 19 C -0.182 4.182 20 O -0.574 6.574 21 C -0.097 4.097 22 C 0.061 3.939 23 H 0.045 0.955 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.033 0.967 28 H 0.264 0.736 29 H 0.062 0.938 30 H 0.003 0.997 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.383 0.617 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.002 0.998 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.241 5.916 -9.577 15.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.161 4.161 3 C 0.074 3.926 4 H 0.048 0.952 5 C -0.575 4.575 6 H 0.051 0.949 7 C -0.184 4.184 8 N -0.590 5.590 9 Si 0.776 3.224 10 H -0.194 1.194 11 H -0.229 1.229 12 H -0.169 1.169 13 N -0.236 5.236 14 C -0.067 4.067 15 C -0.139 4.139 16 C -0.135 4.135 17 C 0.057 3.943 18 H 0.113 0.887 19 C -0.240 4.240 20 O -0.382 6.382 21 C -0.134 4.134 22 C -0.067 4.067 23 H 0.064 0.936 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.022 0.978 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.233 0.767 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.020 0.980 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.549 5.507 -10.066 16.280 hybrid contribution 1.633 -0.212 1.619 2.309 sum -9.916 5.295 -8.447 14.061 Atomic orbital electron populations 1.21641 0.94150 1.01114 1.02195 1.21885 0.96878 0.97535 0.99831 1.19605 0.91342 0.92085 0.89568 0.95220 1.21895 0.92964 1.37181 1.05468 0.94891 1.25843 0.95756 0.96235 1.00528 1.70072 1.10879 1.47186 1.30815 0.85848 0.79627 0.79540 0.77403 1.19418 1.22930 1.16855 1.62372 1.57133 1.01920 1.02140 1.21902 0.96807 0.89369 0.98648 1.21613 1.01336 0.98748 0.92232 1.21846 0.99865 0.95739 0.96033 1.21811 0.80371 0.95680 0.96415 0.88700 1.22491 1.02202 0.96277 1.02988 1.86522 1.20138 1.79132 1.52368 1.21517 1.01768 0.94837 0.95312 1.21954 0.95399 0.98261 0.91082 0.93593 0.91197 0.92474 0.92574 0.94882 0.92715 0.91962 0.97845 0.89917 0.90165 0.92313 0.91623 0.91408 0.91390 0.76713 0.91608 0.90604 0.98011 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.47 9.80 71.98 0.71 -3.76 16 2 C -0.12 -5.18 4.72 30.59 0.14 -5.04 16 3 C 0.18 8.42 1.34 44.17 0.06 8.48 16 4 H 0.03 1.43 7.14 -2.39 -0.02 1.41 16 5 C -0.54 -30.22 7.77 25.60 0.20 -30.02 16 6 H 0.03 2.09 6.08 -2.91 -0.02 2.07 16 7 C 0.01 0.81 5.45 84.65 0.46 1.27 16 8 N -0.95 -59.73 13.96 21.45 0.30 -59.43 16 9 Si 0.95 45.37 24.41 68.60 1.67 47.05 16 10 H -0.27 -12.29 6.83 99.48 0.68 -11.61 16 11 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 12 H -0.24 -10.85 6.53 99.48 0.65 -10.20 16 13 N -0.51 -20.17 4.10 -875.56 -3.59 -23.76 16 14 C 0.06 2.25 5.12 86.32 0.44 2.70 16 15 C -0.10 -2.65 4.72 30.65 0.14 -2.51 16 16 C -0.12 -3.01 2.09 -10.71 -0.02 -3.04 16 17 C 0.12 2.42 3.34 30.59 0.10 2.53 16 18 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 19 C -0.18 -3.14 9.30 71.98 0.67 -2.47 16 20 O -0.57 -12.43 12.74 -148.98 -1.90 -14.33 16 21 C -0.10 -2.84 5.30 30.65 0.16 -2.68 16 22 C 0.06 2.35 4.80 86.33 0.41 2.76 16 23 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 24 H 0.07 2.23 7.75 -2.38 -0.02 2.22 16 25 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 26 H 0.06 2.36 6.05 -2.38 -0.01 2.35 16 27 H 0.03 1.47 3.21 -2.39 -0.01 1.46 16 28 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 29 H 0.06 2.26 8.08 -2.39 -0.02 2.24 16 30 H 0.00 0.14 6.96 -2.39 -0.02 0.12 16 31 H 0.08 1.91 6.60 -2.39 -0.02 1.89 16 32 H 0.08 1.77 6.71 -2.39 -0.02 1.76 16 33 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.07 1.08 6.64 -2.39 -0.02 1.07 16 37 H 0.38 6.34 7.14 -74.06 -0.53 5.81 16 38 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.08 2.18 7.77 -2.39 -0.02 2.17 16 40 H 0.00 0.07 6.62 -2.39 -0.02 0.06 16 41 H 0.06 2.50 5.93 -2.39 -0.01 2.48 16 Total: -1.00 -65.51 297.40 0.36 -65.14 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.39 Total: 17.11 kcal Atomic # 6 Polarization: -35.26 SS G_CDS: 3.48 Total: -31.78 kcal Atomic # 7 Polarization: -79.90 SS G_CDS: -3.29 Total: -83.19 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -1.90 Total: -14.33 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.67 Total: 47.05 kcal Total: -65.51 0.36 -65.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233866290.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.153 kcal (2) G-P(sol) polarization free energy of solvation -65.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds