Wall clock time and date at job start Mon Mar 30 2020 04:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47107 * 2 1 4 4 H 1.09007 * 109.46800 * 304.17562 * 3 2 1 5 5 C 1.50699 * 109.46886 * 184.17992 * 3 2 1 6 6 H 1.08003 * 119.99609 * 239.99310 * 5 3 2 7 7 C 1.37872 * 120.00519 * 59.99679 * 5 3 2 8 8 N 1.31515 * 120.00040 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00339 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46995 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47282 * 119.99819 * 9 7 5 12 12 H 1.48501 * 109.47011 * 239.99835 * 9 7 5 13 13 N 1.46890 * 109.47423 * 64.17520 * 3 2 1 14 14 C 1.46844 * 111.00068 * 65.63483 * 13 3 2 15 15 C 1.53044 * 109.52600 * 185.83884 * 14 13 3 16 16 C 1.53118 * 109.27784 * 300.82084 * 15 14 13 17 17 C 1.52998 * 109.57574 * 177.58920 * 16 15 14 18 18 H 1.08997 * 109.47251 * 300.28427 * 17 16 15 19 19 C 1.53001 * 109.46923 * 60.28326 * 17 16 15 20 20 O 1.42900 * 109.47249 * 180.28540 * 17 16 15 21 21 C 1.53117 * 109.16260 * 57.64964 * 16 15 14 22 22 C 1.46853 * 111.00176 * 189.84144 * 13 3 2 23 23 H 1.08996 * 109.47802 * 300.00548 * 1 2 3 24 24 H 1.09005 * 109.46999 * 60.00998 * 1 2 3 25 25 H 1.09006 * 109.47058 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47608 * 239.98985 * 2 1 3 27 27 H 1.09008 * 109.46809 * 119.99478 * 2 1 3 28 28 H 0.96999 * 120.00630 * 180.02562 * 8 7 5 29 29 H 1.09006 * 109.46519 * 305.85054 * 14 13 3 30 30 H 1.09000 * 109.46773 * 65.82109 * 14 13 3 31 31 H 1.08994 * 109.50606 * 180.87579 * 15 14 13 32 32 H 1.08996 * 109.53369 * 60.77913 * 15 14 13 33 33 H 1.09001 * 109.51768 * 297.74934 * 16 15 14 34 34 H 1.08997 * 109.47075 * 59.99993 * 19 17 16 35 35 H 1.09004 * 109.46957 * 179.97438 * 19 17 16 36 36 H 1.08996 * 109.47233 * 299.99597 * 19 17 16 37 37 H 0.96704 * 113.99872 * 299.99879 * 20 17 16 38 38 H 1.08996 * 109.50576 * 182.40625 * 21 16 15 39 39 H 1.09003 * 109.53203 * 62.30828 * 21 16 15 40 40 H 1.08999 * 109.46229 * 294.18075 * 22 13 3 41 41 H 1.09003 * 109.45872 * 54.14373 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6168 1.9774 -0.8503 5 6 3.5434 1.4437 -0.1036 6 1 4.1382 1.8921 0.6785 7 6 4.1597 0.8725 -1.1967 8 7 3.4355 0.3261 -2.1488 9 14 6.0233 0.8734 -1.3246 10 1 6.6010 1.5444 -0.1324 11 1 6.5155 -0.5260 -1.3927 12 1 6.4349 1.6031 -2.5508 13 7 1.6345 2.1053 1.2466 14 6 2.2938 1.4927 2.4069 15 6 1.7401 2.1084 3.6939 16 6 1.9901 3.6190 3.6799 17 6 1.3860 4.2503 4.9359 18 1 0.3137 4.0565 4.9601 19 6 2.0422 3.6435 6.1777 20 8 1.6148 5.6607 4.9173 21 6 1.3343 4.2255 2.4363 22 6 1.8998 3.5484 1.1858 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5140 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.8690 -0.0761 -2.9177 29 1 2.1046 0.4192 2.4073 30 1 3.3675 1.6720 2.3512 31 1 2.2408 1.6647 4.5544 32 1 0.6689 1.9175 3.7578 33 1 3.0629 3.8104 3.6559 34 1 3.1145 3.8373 6.1534 35 1 1.6121 4.0935 7.0725 36 1 1.8676 2.5677 6.1919 37 1 2.5496 5.9073 4.8954 38 1 1.5451 5.2942 2.3982 39 1 0.2565 4.0684 2.4794 40 1 2.9753 3.7181 1.1357 41 1 1.4244 3.9679 0.2991 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234030497.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:22 Heat of formation + Delta-G solvation = -71.304442 kcal Electronic energy + Delta-G solvation = -18740.754944 eV Core-core repulsion = 16040.556126 eV Total energy + Delta-G solvation = -2700.198818 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.10766 -37.11037 -34.43281 -32.16814 -31.30563 -30.02935 -29.30266 -26.46313 -24.26389 -22.64358 -22.50125 -21.01218 -19.60670 -18.91744 -16.48787 -16.35262 -15.31965 -15.12210 -14.44640 -14.17473 -13.84775 -13.45392 -13.26459 -13.05097 -12.62719 -12.33946 -12.14516 -11.84397 -11.63062 -11.36974 -11.09521 -11.05161 -10.83324 -10.76138 -10.54085 -10.45731 -10.35096 -9.98468 -9.87347 -9.61722 -9.46347 -9.17330 -9.01807 -8.35571 -7.05781 -5.97877 -4.11425 3.24551 3.33377 3.36021 4.39130 4.41429 4.80425 5.04934 5.09794 5.20255 5.25915 5.42453 5.49750 5.64259 5.83225 5.90652 6.02054 6.09112 6.13056 6.23451 6.30752 6.36442 6.46445 6.50100 6.53070 6.62253 6.69026 6.77697 6.82360 6.96208 7.14709 7.21932 7.39928 7.63676 7.67671 7.78457 8.02425 8.19089 8.37294 8.52167 8.99812 9.56102 11.00932 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026011 B = 0.006952 C = 0.006167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.204311 B = 4026.428694 C = 4539.114597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.213 3.787 4 H 0.037 0.963 5 C -0.541 4.541 6 H 0.056 0.944 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.533 5.533 14 C 0.063 3.937 15 C -0.111 4.111 16 C -0.116 4.116 17 C 0.106 3.894 18 H 0.095 0.905 19 C -0.186 4.186 20 O -0.566 6.566 21 C -0.103 4.103 22 C 0.063 3.937 23 H 0.048 0.952 24 H 0.038 0.962 25 H 0.024 0.976 26 H 0.091 0.909 27 H 0.032 0.968 28 H 0.260 0.740 29 H 0.069 0.931 30 H 0.035 0.965 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.371 0.629 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.032 0.968 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.763 4.647 11.459 12.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.149 4.149 3 C 0.106 3.894 4 H 0.055 0.945 5 C -0.580 4.580 6 H 0.074 0.926 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.257 5.257 14 C -0.066 4.066 15 C -0.149 4.149 16 C -0.135 4.135 17 C 0.047 3.953 18 H 0.113 0.887 19 C -0.243 4.243 20 O -0.371 6.371 21 C -0.141 4.141 22 C -0.065 4.065 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.043 0.957 26 H 0.109 0.891 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.218 0.782 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.050 0.950 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.912 4.497 11.342 12.813 hybrid contribution 2.673 -0.076 -0.319 2.693 sum -1.239 4.420 11.024 11.941 Atomic orbital electron populations 1.21705 0.98878 0.98322 1.00596 1.21592 0.92220 0.99221 1.01828 1.19269 0.92857 0.91145 0.86090 0.94538 1.21789 0.92912 1.37613 1.05669 0.92587 1.24912 0.97768 0.95129 0.95671 1.69884 1.34708 1.38222 1.09598 0.86647 0.86375 0.77701 0.77909 1.20037 1.21002 1.21039 1.62382 1.57254 1.01659 1.04422 1.21872 0.96579 0.98654 0.89470 1.21693 1.01389 0.93767 0.98007 1.21880 0.99908 0.96490 0.95176 1.21997 1.00183 0.80029 0.93067 0.88672 1.22547 1.01049 1.02144 0.98578 1.86555 1.30446 1.23013 1.97056 1.21556 1.00222 0.98485 0.93875 1.21841 0.98428 0.89964 0.96297 0.93321 0.94297 0.95698 0.89080 0.94957 0.92982 0.91298 0.94673 0.92527 0.91809 0.91701 0.92572 0.92414 0.91156 0.78230 0.92241 0.91969 0.95024 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.79 37.16 0.36 -2.45 16 2 C -0.11 -2.60 5.14 -26.73 -0.14 -2.74 16 3 C 0.21 5.20 1.71 -68.87 -0.12 5.09 16 4 H 0.04 1.00 7.99 -51.93 -0.41 0.59 16 5 C -0.54 -14.35 7.23 -34.44 -0.25 -14.59 16 6 H 0.06 1.50 5.84 -52.48 -0.31 1.20 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.89 -24.85 11.29 55.43 0.63 -24.22 16 9 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.53 -11.07 4.02 -228.08 -0.92 -11.99 16 14 C 0.06 1.20 4.78 -3.83 -0.02 1.18 16 15 C -0.11 -1.65 4.96 -26.65 -0.13 -1.79 16 16 C -0.12 -1.62 2.02 -90.50 -0.18 -1.80 16 17 C 0.11 1.27 3.17 -26.73 -0.08 1.19 16 18 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 19 C -0.19 -1.89 9.19 37.16 0.34 -1.55 16 20 O -0.57 -6.96 12.72 -35.23 -0.45 -7.41 16 21 C -0.10 -1.62 5.20 -26.65 -0.14 -1.76 16 22 C 0.06 1.22 5.19 -3.83 -0.02 1.20 16 23 H 0.05 0.96 7.73 -51.93 -0.40 0.55 16 24 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.09 2.41 5.97 -51.93 -0.31 2.10 16 27 H 0.03 0.75 6.25 -51.92 -0.32 0.42 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.07 1.37 6.13 -51.93 -0.32 1.05 16 30 H 0.04 0.74 6.38 -51.93 -0.33 0.41 16 31 H 0.06 0.75 6.58 -51.93 -0.34 0.41 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.70 6.50 -51.93 -0.34 0.36 16 37 H 0.37 3.39 9.05 45.56 0.41 3.80 16 38 H 0.06 0.88 7.76 -51.93 -0.40 0.48 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.03 0.66 7.28 -51.93 -0.38 0.28 16 41 H 0.06 1.22 8.02 -51.93 -0.42 0.80 16 LS Contribution 307.50 15.07 4.63 4.63 Total: -1.00 -27.92 307.50 -7.98 -35.91 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.39 Total: 3.32 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -0.47 Total: -16.29 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: -0.29 Total: -36.21 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.45 Total: -7.41 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.92 -7.98 -35.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234030497.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.396 kcal (2) G-P(sol) polarization free energy of solvation -27.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds