Wall clock time and date at job start Mon Mar 30 2020 04:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47107 * 2 1 4 4 H 1.09007 * 109.46800 * 304.17562 * 3 2 1 5 5 C 1.50699 * 109.46886 * 184.17992 * 3 2 1 6 6 H 1.08003 * 119.99609 * 239.99310 * 5 3 2 7 7 C 1.37872 * 120.00519 * 59.99679 * 5 3 2 8 8 N 1.31515 * 120.00040 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00339 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46995 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47282 * 119.99819 * 9 7 5 12 12 H 1.48501 * 109.47011 * 239.99835 * 9 7 5 13 13 N 1.46890 * 109.47423 * 64.17520 * 3 2 1 14 14 C 1.46844 * 111.00068 * 65.63483 * 13 3 2 15 15 C 1.53044 * 109.52600 * 185.83884 * 14 13 3 16 16 C 1.53118 * 109.27784 * 300.82084 * 15 14 13 17 17 C 1.52998 * 109.57574 * 177.58920 * 16 15 14 18 18 H 1.08997 * 109.47251 * 300.28427 * 17 16 15 19 19 C 1.53001 * 109.46923 * 60.28326 * 17 16 15 20 20 O 1.42900 * 109.47249 * 180.28540 * 17 16 15 21 21 C 1.53117 * 109.16260 * 57.64964 * 16 15 14 22 22 C 1.46853 * 111.00176 * 189.84144 * 13 3 2 23 23 H 1.08996 * 109.47802 * 300.00548 * 1 2 3 24 24 H 1.09005 * 109.46999 * 60.00998 * 1 2 3 25 25 H 1.09006 * 109.47058 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47608 * 239.98985 * 2 1 3 27 27 H 1.09008 * 109.46809 * 119.99478 * 2 1 3 28 28 H 0.96999 * 120.00630 * 180.02562 * 8 7 5 29 29 H 1.09006 * 109.46519 * 305.85054 * 14 13 3 30 30 H 1.09000 * 109.46773 * 65.82109 * 14 13 3 31 31 H 1.08994 * 109.50606 * 180.87579 * 15 14 13 32 32 H 1.08996 * 109.53369 * 60.77913 * 15 14 13 33 33 H 1.09001 * 109.51768 * 297.74934 * 16 15 14 34 34 H 1.08997 * 109.47075 * 59.99993 * 19 17 16 35 35 H 1.09004 * 109.46957 * 179.97438 * 19 17 16 36 36 H 1.08996 * 109.47233 * 299.99597 * 19 17 16 37 37 H 0.96704 * 113.99872 * 299.99879 * 20 17 16 38 38 H 1.08996 * 109.50576 * 182.40625 * 21 16 15 39 39 H 1.09003 * 109.53203 * 62.30828 * 21 16 15 40 40 H 1.08999 * 109.46229 * 294.18075 * 22 13 3 41 41 H 1.09003 * 109.45872 * 54.14373 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6168 1.9774 -0.8503 5 6 3.5434 1.4437 -0.1036 6 1 4.1382 1.8921 0.6785 7 6 4.1597 0.8725 -1.1967 8 7 3.4355 0.3261 -2.1488 9 14 6.0233 0.8734 -1.3246 10 1 6.6010 1.5444 -0.1324 11 1 6.5155 -0.5260 -1.3927 12 1 6.4349 1.6031 -2.5508 13 7 1.6345 2.1053 1.2466 14 6 2.2938 1.4927 2.4069 15 6 1.7401 2.1084 3.6939 16 6 1.9901 3.6190 3.6799 17 6 1.3860 4.2503 4.9359 18 1 0.3137 4.0565 4.9601 19 6 2.0422 3.6435 6.1777 20 8 1.6148 5.6607 4.9173 21 6 1.3343 4.2255 2.4363 22 6 1.8998 3.5484 1.1858 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5140 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.8690 -0.0761 -2.9177 29 1 2.1046 0.4192 2.4073 30 1 3.3675 1.6720 2.3512 31 1 2.2408 1.6647 4.5544 32 1 0.6689 1.9175 3.7578 33 1 3.0629 3.8104 3.6559 34 1 3.1145 3.8373 6.1534 35 1 1.6121 4.0935 7.0725 36 1 1.8676 2.5677 6.1919 37 1 2.5496 5.9073 4.8954 38 1 1.5451 5.2942 2.3982 39 1 0.2565 4.0684 2.4794 40 1 2.9753 3.7181 1.1357 41 1 1.4244 3.9679 0.2991 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234030497.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:21 Heat of formation + Delta-G solvation = -89.795677 kcal Electronic energy + Delta-G solvation = -18741.556784 eV Core-core repulsion = 16040.556126 eV Total energy + Delta-G solvation = -2701.000658 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.45781 -38.42775 -35.97899 -33.92718 -32.87387 -31.50854 -30.48868 -28.29832 -25.79971 -24.28326 -23.94377 -22.21411 -21.13853 -20.63566 -18.31948 -17.55751 -16.98258 -16.27765 -16.06324 -15.67613 -15.09045 -15.07031 -14.76065 -14.53470 -14.16248 -13.83824 -13.43919 -13.22376 -13.15775 -12.91021 -12.71591 -12.60095 -12.42357 -12.26143 -12.12719 -11.94385 -11.66805 -11.59318 -11.51382 -11.31034 -10.99969 -10.89196 -10.47110 -10.42576 -8.87835 -8.02925 -6.26436 1.33805 1.36763 1.46030 2.38420 3.14101 3.43452 3.54324 3.80284 3.94413 4.09170 4.39461 4.42543 4.50277 4.54868 4.59770 4.69330 4.75844 4.78637 4.91567 4.93301 5.01178 5.04715 5.08674 5.10302 5.21006 5.28558 5.29663 5.37316 5.41153 5.44342 5.53314 5.57753 5.66634 5.80647 6.09045 6.22344 6.41576 6.74301 6.90367 6.96732 7.44602 8.91349 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026011 B = 0.006952 C = 0.006167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.204311 B = 4026.428694 C = 4539.114597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.105 4.105 3 C 0.218 3.782 4 H -0.001 1.001 5 C -0.549 4.549 6 H 0.048 0.952 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.946 3.054 10 H -0.273 1.273 11 H -0.279 1.279 12 H -0.282 1.282 13 N -0.529 5.529 14 C 0.064 3.936 15 C -0.101 4.101 16 C -0.110 4.110 17 C 0.115 3.885 18 H 0.094 0.906 19 C -0.181 4.181 20 O -0.578 6.578 21 C -0.093 4.093 22 C 0.064 3.936 23 H 0.058 0.942 24 H 0.030 0.970 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.032 0.968 28 H 0.261 0.739 29 H 0.059 0.941 30 H 0.012 0.988 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.385 0.615 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.010 0.990 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.793 4.986 13.542 14.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.143 4.143 3 C 0.110 3.890 4 H 0.017 0.983 5 C -0.588 4.588 6 H 0.066 0.934 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.772 3.228 10 H -0.197 1.197 11 H -0.205 1.205 12 H -0.208 1.208 13 N -0.253 5.253 14 C -0.064 4.064 15 C -0.138 4.138 16 C -0.129 4.129 17 C 0.056 3.944 18 H 0.112 0.888 19 C -0.238 4.238 20 O -0.385 6.385 21 C -0.131 4.131 22 C -0.065 4.065 23 H 0.077 0.923 24 H 0.049 0.951 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.030 0.970 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.234 0.766 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.028 0.972 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.938 4.847 13.442 14.822 hybrid contribution 2.685 -0.151 -0.992 2.867 sum -1.253 4.695 12.450 13.365 Atomic orbital electron populations 1.21563 0.96274 0.99767 1.00649 1.21429 0.94504 0.98116 1.00266 1.19052 0.91662 0.91591 0.86682 0.98315 1.22007 0.94127 1.37216 1.05443 0.93353 1.25619 1.01822 0.95015 0.95508 1.70010 1.36230 1.38860 1.10008 0.85701 0.81528 0.77769 0.77794 1.19739 1.20470 1.20783 1.62357 1.57071 1.02301 1.03539 1.21904 0.95299 0.98460 0.90736 1.21625 1.01762 0.94253 0.96202 1.21837 0.99726 0.95820 0.95509 1.21869 1.00099 0.79930 0.92496 0.88765 1.22496 1.01283 1.02289 0.97777 1.86530 1.31953 1.23012 1.97006 1.21458 1.00113 0.98773 0.92715 1.21873 0.97166 0.89383 0.98040 0.92333 0.95059 0.93540 0.92117 0.94891 0.92955 0.92228 0.97014 0.90035 0.91120 0.92019 0.92006 0.91568 0.90687 0.76648 0.91117 0.91786 0.97202 0.93377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.05 9.79 71.98 0.70 -4.35 16 2 C -0.10 -5.03 5.14 30.59 0.16 -4.87 16 3 C 0.22 10.97 1.71 44.17 0.08 11.04 16 4 H 0.00 -0.06 7.99 -2.38 -0.02 -0.08 16 5 C -0.55 -29.89 7.23 25.60 0.19 -29.71 16 6 H 0.05 2.66 5.84 -2.91 -0.02 2.64 16 7 C 0.02 1.10 5.29 84.65 0.45 1.55 16 8 N -0.91 -52.43 11.29 21.45 0.24 -52.19 16 9 Si 0.95 43.78 29.54 68.60 2.03 45.80 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 N -0.53 -22.16 4.02 -875.50 -3.52 -25.69 16 14 C 0.06 2.43 4.78 86.33 0.41 2.84 16 15 C -0.10 -2.78 4.96 30.65 0.15 -2.62 16 16 C -0.11 -2.83 2.02 -10.72 -0.02 -2.85 16 17 C 0.11 2.40 3.17 30.59 0.10 2.50 16 18 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 19 C -0.18 -3.05 9.19 71.98 0.66 -2.39 16 20 O -0.58 -12.54 12.72 -148.98 -1.89 -14.44 16 21 C -0.09 -2.78 5.20 30.65 0.16 -2.62 16 22 C 0.06 2.50 5.19 86.32 0.45 2.95 16 23 H 0.06 2.23 7.73 -2.39 -0.02 2.21 16 24 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 26 H 0.06 3.30 5.97 -2.39 -0.01 3.29 16 27 H 0.03 1.54 6.25 -2.38 -0.01 1.52 16 28 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 29 H 0.06 2.34 6.13 -2.38 -0.01 2.32 16 30 H 0.01 0.49 6.38 -2.39 -0.02 0.48 16 31 H 0.08 1.88 6.58 -2.39 -0.02 1.87 16 32 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.07 1.20 6.50 -2.39 -0.02 1.19 16 37 H 0.38 5.93 9.05 -74.05 -0.67 5.26 16 38 H 0.07 1.98 7.76 -2.39 -0.02 1.96 16 39 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.01 0.42 7.28 -2.39 -0.02 0.40 16 41 H 0.05 1.97 8.02 -2.39 -0.02 1.95 16 Total: -1.00 -60.64 307.50 0.66 -59.99 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.33 Total: 15.04 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: 3.48 Total: -28.52 kcal Atomic # 7 Polarization: -74.59 SS G_CDS: -3.28 Total: -77.87 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -1.89 Total: -14.44 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -60.64 0.66 -59.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234030497.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.810 kcal (2) G-P(sol) polarization free energy of solvation -60.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds