Wall clock time and date at job start Mon Mar 30 2020 04:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47316 * 2 1 4 4 H 1.08999 * 109.47649 * 305.25043 * 3 2 1 5 5 C 1.50704 * 109.47155 * 185.25165 * 3 2 1 6 6 H 1.07991 * 120.00397 * 244.96658 * 5 3 2 7 7 C 1.37883 * 119.99860 * 64.96789 * 5 3 2 8 8 N 1.31508 * 120.00064 * 190.84526 * 7 5 3 9 9 Si 1.86800 * 119.99889 * 10.83923 * 7 5 3 10 10 H 1.48495 * 109.47090 * 92.99664 * 9 7 5 11 11 H 1.48500 * 109.47255 * 213.00066 * 9 7 5 12 12 H 1.48504 * 109.46962 * 332.99729 * 9 7 5 13 13 N 1.46898 * 109.47531 * 65.25617 * 3 2 1 14 14 C 1.48560 * 110.99833 * 29.94665 * 13 3 2 15 15 C 1.54383 * 104.59403 * 200.96336 * 14 13 3 16 16 C 1.54260 * 105.06275 * 23.85559 * 15 14 13 17 17 C 1.48564 * 110.99767 * 274.53176 * 13 3 2 18 18 H 1.09000 * 110.51448 * 40.20793 * 17 13 3 19 19 C 1.53006 * 110.41196 * 277.81542 * 17 13 3 20 20 C 1.52998 * 109.46862 * 71.65240 * 19 17 13 21 21 C 1.52998 * 109.46692 * 173.35705 * 20 19 17 22 22 O 1.42903 * 109.47147 * 180.02562 * 21 20 19 23 23 H 1.08989 * 109.47701 * 172.52187 * 1 2 3 24 24 H 1.09004 * 109.46839 * 292.52632 * 1 2 3 25 25 H 1.09005 * 109.46715 * 52.51850 * 1 2 3 26 26 H 1.08998 * 109.46623 * 239.99840 * 2 1 3 27 27 H 1.09000 * 109.46663 * 119.99897 * 2 1 3 28 28 H 0.97002 * 119.99997 * 180.02562 * 8 7 5 29 29 H 1.08994 * 110.41527 * 82.18865 * 14 13 3 30 30 H 1.09000 * 110.51402 * 319.78949 * 14 13 3 31 31 H 1.08992 * 110.32316 * 264.95470 * 15 14 13 32 32 H 1.09004 * 110.32227 * 142.74614 * 15 14 13 33 33 H 1.09003 * 110.32255 * 241.10780 * 16 15 14 34 34 H 1.08997 * 110.41362 * 118.93877 * 16 15 14 35 35 H 1.09003 * 109.46591 * 311.65457 * 19 17 13 36 36 H 1.08994 * 109.47115 * 191.65729 * 19 17 13 37 37 H 1.09000 * 109.47094 * 53.35570 * 20 19 17 38 38 H 1.08999 * 109.47094 * 293.35537 * 20 19 17 39 39 H 1.08999 * 109.47214 * 299.99758 * 21 20 19 40 40 H 1.09000 * 109.47461 * 60.00090 * 21 20 19 41 41 H 0.96697 * 114.00470 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6021 1.9827 -0.8392 5 6 3.5415 1.4443 -0.1301 6 1 4.1531 1.8147 0.6792 7 6 4.1342 0.9732 -1.2824 8 7 5.4336 0.7740 -1.3193 9 14 3.0916 0.6178 -2.7910 10 1 3.0639 1.8163 -3.6672 11 1 3.6735 -0.5272 -3.5364 12 1 1.7082 0.2814 -2.3685 13 7 1.6568 2.0974 1.2578 14 6 1.5749 1.1128 2.3673 15 6 0.6776 1.7917 3.4243 16 6 -0.1709 2.8102 2.6354 17 6 0.2852 2.6610 1.1680 18 1 -0.3742 1.9780 0.6326 19 6 0.3132 4.0257 0.4767 20 6 0.6012 3.8363 -1.0140 21 6 0.4660 5.1794 -1.7341 22 8 0.7344 5.0025 -3.1265 23 1 -0.3634 -1.0188 -0.1337 24 1 -0.3633 0.3937 0.9493 25 1 -0.3633 0.6254 -0.8156 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 5.8507 0.4429 -2.1301 29 1 2.5659 0.9193 2.7777 30 1 1.1196 0.1848 2.0216 31 1 1.2889 2.3033 4.1676 32 1 0.0342 1.0544 3.9046 33 1 0.0241 3.8218 2.9915 34 1 -1.2311 2.5746 2.7281 35 1 1.0938 4.6426 0.9220 36 1 -0.6524 4.5158 0.6008 37 1 -0.1104 3.1255 -1.4341 38 1 1.6143 3.4553 -1.1428 39 1 -0.5471 5.5604 -1.6053 40 1 1.1776 5.8902 -1.3140 41 1 0.6672 5.8150 -3.6464 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251347060.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:32 Heat of formation + Delta-G solvation = -31.482742 kcal Electronic energy + Delta-G solvation = -19205.406715 eV Core-core repulsion = 16506.934695 eV Total energy + Delta-G solvation = -2698.472020 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.46350 -36.78477 -34.31324 -33.24910 -31.88595 -29.69538 -28.62882 -27.00950 -24.53221 -22.65396 -22.10644 -20.39245 -19.72957 -18.96201 -17.11575 -16.40663 -16.11255 -15.40387 -14.77722 -14.20561 -14.08731 -13.67031 -13.37914 -12.79643 -12.51333 -12.34859 -12.13737 -11.91800 -11.58984 -11.34619 -11.26797 -10.98188 -10.87777 -10.64737 -10.56244 -10.35476 -10.19118 -10.10789 -9.90222 -9.72213 -9.50107 -9.17055 -8.96564 -8.28907 -7.25328 -5.98310 -3.92030 3.36729 3.43843 3.50643 4.44143 4.51120 4.83259 5.17366 5.20579 5.30896 5.33195 5.44803 5.48842 5.62118 5.72193 5.79619 5.85518 5.88181 5.98555 6.04692 6.05834 6.11465 6.17849 6.25431 6.33409 6.48815 6.52964 6.55006 6.60178 6.68215 6.73274 6.84773 6.91524 7.06807 7.25661 7.76605 7.84705 8.01462 8.08464 8.78113 9.15595 9.67293 11.15122 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.015586 B = 0.012546 C = 0.008444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.076803 B = 2231.301992 C = 3315.160981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.163 4.163 3 C 0.162 3.838 4 H 0.054 0.946 5 C -0.494 4.494 6 H 0.078 0.922 7 C 0.073 3.927 8 N -0.899 5.899 9 Si 0.852 3.148 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.249 1.249 13 N -0.480 5.480 14 C 0.022 3.978 15 C -0.125 4.125 16 C -0.117 4.117 17 C 0.039 3.961 18 H 0.063 0.937 19 C -0.094 4.094 20 C -0.136 4.136 21 C 0.078 3.922 22 O -0.573 6.573 23 H 0.039 0.961 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.261 0.739 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.102 0.898 39 H 0.036 0.964 40 H 0.045 0.955 41 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.092 5.250 3.642 14.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.202 4.202 3 C 0.054 3.946 4 H 0.071 0.929 5 C -0.533 4.533 6 H 0.096 0.904 7 C -0.129 4.129 8 N -0.538 5.538 9 Si 0.679 3.321 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.174 1.174 13 N -0.204 5.204 14 C -0.106 4.106 15 C -0.163 4.163 16 C -0.156 4.156 17 C -0.070 4.070 18 H 0.080 0.920 19 C -0.132 4.132 20 C -0.173 4.173 21 C 0.000 4.000 22 O -0.377 6.377 23 H 0.058 0.942 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.054 0.946 40 H 0.063 0.937 41 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -12.440 4.980 3.817 13.933 hybrid contribution -1.057 -0.329 -1.312 1.717 sum -13.497 4.652 2.504 14.494 Atomic orbital electron populations 1.22223 0.98710 1.00114 1.00867 1.22757 0.92827 1.02479 1.02133 1.20234 0.97273 0.88484 0.88622 0.92901 1.20893 0.88867 1.40803 1.02689 0.90410 1.24868 0.94638 0.94993 0.98366 1.69930 1.09885 1.46059 1.27924 0.87441 0.82209 0.78286 0.84186 1.20198 1.21680 1.17375 1.65604 1.19886 1.29266 1.05609 1.23323 0.99705 0.95471 0.92088 1.22312 0.97950 0.97882 0.98204 1.22289 0.98282 0.99685 0.95304 1.23036 0.92877 0.96171 0.94927 0.91969 1.21360 1.00643 0.97124 0.94045 1.21924 1.05162 0.95744 0.94480 1.22256 0.97968 0.98474 0.81265 1.86577 1.93938 1.37216 1.19962 0.94222 0.92483 0.93440 0.91990 0.91656 0.92891 0.90646 0.92371 0.91789 0.92526 0.91620 0.92524 0.90974 0.92795 0.92261 0.87972 0.94579 0.93713 0.78241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 7.93 37.16 0.29 -2.60 16 2 C -0.16 -3.51 4.07 -26.73 -0.11 -3.62 16 3 C 0.16 3.73 0.98 -68.87 -0.07 3.67 16 4 H 0.05 1.25 2.88 -51.93 -0.15 1.10 16 5 C -0.49 -13.91 9.27 -34.44 -0.32 -14.23 16 6 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 7 C 0.07 2.11 5.39 -17.82 -0.10 2.01 16 8 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 9 Si 0.85 21.66 25.75 -169.99 -4.38 17.29 16 10 H -0.28 -7.18 7.11 56.52 0.40 -6.77 16 11 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 12 H -0.25 -5.92 5.21 56.52 0.29 -5.63 16 13 N -0.48 -9.73 4.92 -215.61 -1.06 -10.79 16 14 C 0.02 0.40 5.30 -2.18 -0.01 0.39 16 15 C -0.13 -1.83 7.00 -25.35 -0.18 -2.00 16 16 C -0.12 -1.65 6.55 -25.35 -0.17 -1.82 16 17 C 0.04 0.64 1.90 -66.06 -0.13 0.52 16 18 H 0.06 1.05 4.27 -51.93 -0.22 0.83 16 19 C -0.09 -1.46 4.79 -26.73 -0.13 -1.59 16 20 C -0.14 -2.39 4.20 -26.73 -0.11 -2.50 16 21 C 0.08 1.15 7.05 37.16 0.26 1.41 16 22 O -0.57 -9.16 13.66 -35.23 -0.48 -9.64 16 23 H 0.04 0.64 8.14 -51.94 -0.42 0.21 16 24 H 0.06 0.94 4.73 -51.93 -0.25 0.69 16 25 H 0.05 0.85 7.75 -51.93 -0.40 0.45 16 26 H 0.06 1.44 4.55 -51.93 -0.24 1.20 16 27 H 0.07 1.40 5.86 -51.93 -0.30 1.09 16 28 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 29 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.06 1.05 3.86 -51.93 -0.20 0.85 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.87 7.86 -51.93 -0.41 0.47 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 1.05 8.08 -51.93 -0.42 0.64 16 38 H 0.10 2.22 5.69 -51.93 -0.30 1.92 16 39 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.37 3.83 9.12 45.56 0.42 4.24 16 LS Contribution 296.43 15.07 4.47 4.47 Total: -1.00 -31.80 296.43 -7.37 -39.18 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -5.94 Total: 6.95 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: -0.76 Total: -20.36 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: -0.29 Total: -37.88 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -0.48 Total: -9.64 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.38 Total: 17.29 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.80 -7.37 -39.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251347060.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.693 kcal (2) G-P(sol) polarization free energy of solvation -31.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds