Wall clock time and date at job start Mon Mar 30 2020 04:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47391 * 2 1 4 4 H 1.08997 * 109.47335 * 306.41540 * 3 2 1 5 5 C 1.50700 * 109.47147 * 186.41653 * 3 2 1 6 6 H 1.08006 * 120.00049 * 238.92758 * 5 3 2 7 7 C 1.37874 * 120.00181 * 58.93023 * 5 3 2 8 8 N 1.31521 * 119.99822 * 8.91970 * 7 5 3 9 9 Si 1.86803 * 120.00362 * 188.92549 * 7 5 3 10 10 H 1.48496 * 109.46987 * 94.98880 * 9 7 5 11 11 H 1.48494 * 109.46934 * 214.99216 * 9 7 5 12 12 H 1.48505 * 109.46717 * 334.98884 * 9 7 5 13 13 N 1.46904 * 109.47051 * 66.42049 * 3 2 1 14 14 C 1.46841 * 110.99773 * 211.69984 * 13 3 2 15 15 C 1.53037 * 109.52610 * 174.15810 * 14 13 3 16 16 C 1.53124 * 109.27848 * 59.17312 * 15 14 13 17 17 C 1.53124 * 109.15995 * 302.35197 * 16 15 14 18 18 C 1.46844 * 111.00175 * 87.48276 * 13 3 2 19 19 H 1.09004 * 109.45891 * 65.82721 * 18 13 3 20 20 C 1.52993 * 109.45648 * 305.85036 * 18 13 3 21 21 C 1.52997 * 109.47115 * 180.56922 * 20 18 13 22 22 O 1.42902 * 109.47030 * 185.16856 * 21 20 18 23 23 H 1.08997 * 109.46769 * 64.75578 * 1 2 3 24 24 H 1.09001 * 109.47165 * 184.75284 * 1 2 3 25 25 H 1.09003 * 109.46567 * 304.75809 * 1 2 3 26 26 H 1.09005 * 109.46852 * 239.99810 * 2 1 3 27 27 H 1.09003 * 109.46828 * 120.01050 * 2 1 3 28 28 H 0.97001 * 119.99856 * 179.97438 * 8 7 5 29 29 H 1.08996 * 109.46956 * 54.13767 * 14 13 3 30 30 H 1.08998 * 109.45236 * 294.16323 * 14 13 3 31 31 H 1.09003 * 109.50381 * 299.23682 * 15 14 13 32 32 H 1.09000 * 109.50888 * 179.11686 * 15 14 13 33 33 H 1.08994 * 109.52384 * 182.44233 * 16 15 14 34 34 H 1.09000 * 109.51955 * 62.25197 * 16 15 14 35 35 H 1.08999 * 109.49966 * 297.70731 * 17 16 15 36 36 H 1.09003 * 109.50186 * 177.59162 * 17 16 15 37 37 H 1.08999 * 109.47691 * 300.57663 * 20 18 13 38 38 H 1.09010 * 109.47046 * 60.57710 * 20 18 13 39 39 H 1.08995 * 109.47765 * 305.17369 * 21 20 18 40 40 H 1.08999 * 109.46785 * 65.17680 * 21 20 18 41 41 H 0.96704 * 114.00049 * 184.99449 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5861 1.9884 -0.8270 5 6 3.5387 1.4453 -0.1588 6 1 4.1611 1.8989 0.5984 7 6 4.1153 0.8690 -1.2707 8 7 3.3606 0.4746 -2.2730 9 14 5.9684 0.6481 -1.3536 10 1 6.3247 -0.7194 -0.8976 11 1 6.4274 0.8387 -2.7529 12 1 6.6259 1.6496 -0.4761 13 7 1.6810 2.0888 1.2694 14 6 1.4432 3.5253 1.0796 15 6 0.9319 4.1362 2.3863 16 6 1.9706 3.9130 3.4891 17 6 2.2358 2.4118 3.6333 18 6 2.7093 1.8510 2.2904 19 1 3.6346 2.3462 1.9960 20 6 2.9561 0.3471 2.4246 21 6 4.0172 0.0982 3.4983 22 8 4.3351 -1.2944 3.5401 23 1 -0.3633 0.4383 -0.9295 24 1 -0.3633 -1.0241 0.0852 25 1 -0.3632 0.5859 0.8443 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5140 0.8899 28 1 3.7662 0.0694 -3.0554 29 1 0.6997 3.6700 0.2958 30 1 2.3746 4.0124 0.7910 31 1 -0.0066 3.6589 2.6685 32 1 0.7704 5.2054 2.2495 33 1 1.5919 4.3082 4.4316 34 1 2.8972 4.4229 3.2252 35 1 1.3179 1.9075 3.9350 36 1 3.0059 2.2492 4.3874 37 1 2.0283 -0.1495 2.7085 38 1 3.3039 -0.0505 1.4710 39 1 4.9150 0.6689 3.2612 40 1 3.6327 0.4123 4.4687 41 1 4.9454 -1.5374 4.2498 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252434001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:50 Heat of formation + Delta-G solvation = -52.508747 kcal Electronic energy + Delta-G solvation = -19352.257895 eV Core-core repulsion = 16652.874119 eV Total energy + Delta-G solvation = -2699.383776 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.06075 -36.36069 -34.74878 -32.29773 -31.82760 -30.57271 -27.84466 -26.47488 -23.73412 -23.34042 -22.07540 -20.21522 -19.40319 -19.04103 -17.03192 -16.14569 -15.25867 -14.82313 -14.38389 -14.16242 -13.73672 -13.35351 -13.23091 -12.86009 -12.68152 -12.40937 -11.88438 -11.53491 -11.30877 -11.24672 -11.03799 -10.87157 -10.75221 -10.57851 -10.36273 -10.32898 -9.90691 -9.78568 -9.68784 -9.40771 -9.36507 -9.18647 -8.81757 -8.17203 -7.03347 -5.98996 -4.05615 3.29714 3.37089 3.38931 4.42720 4.60353 5.08406 5.26972 5.33408 5.40179 5.45620 5.63861 5.75347 5.85657 6.05951 6.07814 6.12251 6.20070 6.35624 6.38013 6.40960 6.46108 6.53909 6.56323 6.62278 6.70592 6.76367 6.82096 7.08898 7.19545 7.23018 7.34908 7.49484 7.70330 7.83250 7.99791 8.05727 8.15944 8.38384 8.58729 9.02463 9.58833 11.03372 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.016955 B = 0.010915 C = 0.009181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.067682 B = 2564.741959 C = 3049.015235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.122 4.122 3 C 0.214 3.786 4 H 0.032 0.968 5 C -0.544 4.544 6 H 0.064 0.936 7 C 0.071 3.929 8 N -0.881 5.881 9 Si 0.880 3.120 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.529 5.529 14 C 0.063 3.937 15 C -0.115 4.115 16 C -0.117 4.117 17 C -0.118 4.118 18 C 0.104 3.896 19 H 0.049 0.951 20 C -0.121 4.121 21 C 0.076 3.924 22 O -0.573 6.573 23 H 0.034 0.966 24 H 0.024 0.976 25 H 0.049 0.951 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.260 0.740 29 H 0.063 0.937 30 H 0.028 0.972 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.117 0.883 39 H 0.038 0.962 40 H 0.035 0.965 41 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.456 2.853 10.400 10.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C 0.107 3.893 4 H 0.050 0.950 5 C -0.583 4.583 6 H 0.082 0.918 7 C -0.132 4.132 8 N -0.519 5.519 9 Si 0.708 3.292 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.201 1.201 13 N -0.254 5.254 14 C -0.066 4.066 15 C -0.153 4.153 16 C -0.155 4.155 17 C -0.156 4.156 18 C -0.005 4.005 19 H 0.066 0.934 20 C -0.158 4.158 21 C -0.002 4.002 22 O -0.376 6.376 23 H 0.053 0.947 24 H 0.043 0.957 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.135 0.865 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -2.310 2.562 9.841 10.428 hybrid contribution 2.224 0.310 0.024 2.246 sum -0.086 2.872 9.865 10.275 Atomic orbital electron populations 1.21704 0.99140 0.98489 1.00236 1.21916 0.92355 0.99346 1.02372 1.19247 0.93574 0.91463 0.84989 0.94967 1.21806 0.92810 1.37840 1.05845 0.91779 1.24887 0.97433 0.95582 0.95279 1.69957 1.34901 1.41007 1.06031 0.86769 0.86571 0.78695 0.77170 1.20464 1.21382 1.20114 1.62299 1.43128 1.09509 1.10442 1.21898 0.99102 0.89861 0.95751 1.21598 0.98839 0.99091 0.95767 1.21537 0.99018 0.96848 0.98080 1.21802 1.00845 0.95273 0.97697 1.21242 0.94245 0.94475 0.90545 0.93373 1.22021 0.96965 0.96172 1.00665 1.22354 0.98184 0.81101 0.98531 1.86553 1.68594 1.25817 1.56686 0.94673 0.95677 0.93199 0.90293 0.92588 0.92985 0.91895 0.95357 0.91819 0.92826 0.93002 0.92735 0.91860 0.92801 0.92058 0.86469 0.94350 0.94670 0.78714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.86 37.16 0.37 -2.51 16 2 C -0.12 -2.88 4.98 -26.73 -0.13 -3.01 16 3 C 0.21 5.16 1.60 -68.87 -0.11 5.05 16 4 H 0.03 0.88 7.61 -51.93 -0.39 0.48 16 5 C -0.54 -14.19 6.19 -34.44 -0.21 -14.40 16 6 H 0.06 1.68 5.16 -52.48 -0.27 1.40 16 7 C 0.07 1.92 5.14 -17.82 -0.09 1.83 16 8 N -0.88 -24.80 11.65 55.43 0.65 -24.16 16 9 Si 0.88 21.18 29.55 -169.99 -5.02 16.16 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.53 -10.91 3.82 -220.16 -0.84 -11.75 16 14 C 0.06 1.18 5.34 -3.84 -0.02 1.16 16 15 C -0.12 -1.75 6.09 -26.65 -0.16 -1.91 16 16 C -0.12 -1.70 6.00 -26.60 -0.16 -1.85 16 17 C -0.12 -1.86 4.98 -26.65 -0.13 -1.99 16 18 C 0.10 1.99 1.35 -67.73 -0.09 1.90 16 19 H 0.05 1.03 5.91 -51.93 -0.31 0.73 16 20 C -0.12 -2.39 3.32 -26.74 -0.09 -2.48 16 21 C 0.08 1.27 6.52 37.16 0.24 1.51 16 22 O -0.57 -9.59 13.66 -35.23 -0.48 -10.07 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 1.00 7.68 -51.93 -0.40 0.60 16 26 H 0.08 2.10 6.20 -51.93 -0.32 1.78 16 27 H 0.06 1.31 4.17 -51.93 -0.22 1.09 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.06 1.19 7.90 -51.93 -0.41 0.78 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.05 0.76 6.59 -51.93 -0.34 0.42 16 37 H 0.06 1.22 7.50 -51.93 -0.39 0.83 16 38 H 0.12 2.76 4.25 -51.92 -0.22 2.54 16 39 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.04 0.50 6.73 -51.93 -0.35 0.15 16 41 H 0.37 4.08 9.12 45.56 0.42 4.50 16 LS Contribution 301.76 15.07 4.55 4.55 Total: -1.00 -28.39 301.76 -7.89 -36.28 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -6.15 Total: 5.70 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: -0.59 Total: -16.70 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: -0.20 Total: -35.91 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: -0.48 Total: -10.07 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.39 -7.89 -36.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252434001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.229 kcal (2) G-P(sol) polarization free energy of solvation -28.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds