Wall clock time and date at job start Mon Mar 30 2020 04:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47391 * 2 1 4 4 H 1.08997 * 109.47335 * 306.41540 * 3 2 1 5 5 C 1.50700 * 109.47147 * 186.41653 * 3 2 1 6 6 H 1.08006 * 120.00049 * 238.92758 * 5 3 2 7 7 C 1.37874 * 120.00181 * 58.93023 * 5 3 2 8 8 N 1.31521 * 119.99822 * 8.91970 * 7 5 3 9 9 Si 1.86803 * 120.00362 * 188.92549 * 7 5 3 10 10 H 1.48496 * 109.46987 * 94.98880 * 9 7 5 11 11 H 1.48494 * 109.46934 * 214.99216 * 9 7 5 12 12 H 1.48505 * 109.46717 * 334.98884 * 9 7 5 13 13 N 1.46904 * 109.47051 * 66.42049 * 3 2 1 14 14 C 1.46841 * 110.99773 * 211.69984 * 13 3 2 15 15 C 1.53037 * 109.52610 * 174.15810 * 14 13 3 16 16 C 1.53124 * 109.27848 * 59.17312 * 15 14 13 17 17 C 1.53124 * 109.15995 * 302.35197 * 16 15 14 18 18 C 1.46844 * 111.00175 * 87.48276 * 13 3 2 19 19 H 1.09004 * 109.45891 * 65.82721 * 18 13 3 20 20 C 1.52993 * 109.45648 * 305.85036 * 18 13 3 21 21 C 1.52997 * 109.47115 * 180.56922 * 20 18 13 22 22 O 1.42902 * 109.47030 * 185.16856 * 21 20 18 23 23 H 1.08997 * 109.46769 * 64.75578 * 1 2 3 24 24 H 1.09001 * 109.47165 * 184.75284 * 1 2 3 25 25 H 1.09003 * 109.46567 * 304.75809 * 1 2 3 26 26 H 1.09005 * 109.46852 * 239.99810 * 2 1 3 27 27 H 1.09003 * 109.46828 * 120.01050 * 2 1 3 28 28 H 0.97001 * 119.99856 * 179.97438 * 8 7 5 29 29 H 1.08996 * 109.46956 * 54.13767 * 14 13 3 30 30 H 1.08998 * 109.45236 * 294.16323 * 14 13 3 31 31 H 1.09003 * 109.50381 * 299.23682 * 15 14 13 32 32 H 1.09000 * 109.50888 * 179.11686 * 15 14 13 33 33 H 1.08994 * 109.52384 * 182.44233 * 16 15 14 34 34 H 1.09000 * 109.51955 * 62.25197 * 16 15 14 35 35 H 1.08999 * 109.49966 * 297.70731 * 17 16 15 36 36 H 1.09003 * 109.50186 * 177.59162 * 17 16 15 37 37 H 1.08999 * 109.47691 * 300.57663 * 20 18 13 38 38 H 1.09010 * 109.47046 * 60.57710 * 20 18 13 39 39 H 1.08995 * 109.47765 * 305.17369 * 21 20 18 40 40 H 1.08999 * 109.46785 * 65.17680 * 21 20 18 41 41 H 0.96704 * 114.00049 * 184.99449 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5861 1.9884 -0.8270 5 6 3.5387 1.4453 -0.1588 6 1 4.1611 1.8989 0.5984 7 6 4.1153 0.8690 -1.2707 8 7 3.3606 0.4746 -2.2730 9 14 5.9684 0.6481 -1.3536 10 1 6.3247 -0.7194 -0.8976 11 1 6.4274 0.8387 -2.7529 12 1 6.6259 1.6496 -0.4761 13 7 1.6810 2.0888 1.2694 14 6 1.4432 3.5253 1.0796 15 6 0.9319 4.1362 2.3863 16 6 1.9706 3.9130 3.4891 17 6 2.2358 2.4118 3.6333 18 6 2.7093 1.8510 2.2904 19 1 3.6346 2.3462 1.9960 20 6 2.9561 0.3471 2.4246 21 6 4.0172 0.0982 3.4983 22 8 4.3351 -1.2944 3.5401 23 1 -0.3633 0.4383 -0.9295 24 1 -0.3633 -1.0241 0.0852 25 1 -0.3632 0.5859 0.8443 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5140 0.8899 28 1 3.7662 0.0694 -3.0554 29 1 0.6997 3.6700 0.2958 30 1 2.3746 4.0124 0.7910 31 1 -0.0066 3.6589 2.6685 32 1 0.7704 5.2054 2.2495 33 1 1.5919 4.3082 4.4316 34 1 2.8972 4.4229 3.2252 35 1 1.3179 1.9075 3.9350 36 1 3.0059 2.2492 4.3874 37 1 2.0283 -0.1495 2.7085 38 1 3.3039 -0.0505 1.4710 39 1 4.9150 0.6689 3.2612 40 1 3.6327 0.4123 4.4687 41 1 4.9454 -1.5374 4.2498 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252434001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:49 Heat of formation + Delta-G solvation = -72.047135 kcal Electronic energy + Delta-G solvation = -19353.105143 eV Core-core repulsion = 16652.874119 eV Total energy + Delta-G solvation = -2700.231024 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.62987 -37.67512 -36.41776 -33.89158 -33.64069 -32.22683 -29.24648 -28.36715 -25.43410 -24.85449 -23.62857 -21.63242 -21.24509 -20.56712 -18.48550 -17.93792 -17.02825 -16.28064 -16.06852 -15.70918 -15.05648 -15.03573 -14.74428 -14.43953 -14.15692 -14.08112 -13.49517 -13.18957 -13.08616 -12.84527 -12.66360 -12.57592 -12.47612 -12.20550 -12.03831 -11.66889 -11.59018 -11.34369 -11.23256 -11.13633 -11.00817 -10.73382 -10.58735 -10.15847 -8.81199 -8.04387 -6.18077 1.34266 1.38306 1.44100 2.40413 3.16920 3.24832 3.68567 4.04147 4.13921 4.18800 4.29321 4.44875 4.50600 4.58453 4.68103 4.75404 4.76996 4.80523 4.84809 4.93786 4.99231 5.08926 5.13132 5.19709 5.26185 5.29060 5.36184 5.43637 5.46857 5.59806 5.60727 5.68862 5.78154 5.88350 6.11222 6.22494 6.45373 6.81979 7.00023 7.03547 7.48939 8.94497 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.016955 B = 0.010915 C = 0.009181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.067682 B = 2564.741959 C = 3049.015235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.116 4.116 3 C 0.222 3.778 4 H -0.007 1.007 5 C -0.541 4.541 6 H 0.061 0.939 7 C 0.023 3.977 8 N -0.912 5.912 9 Si 0.934 3.066 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.270 1.270 13 N -0.527 5.527 14 C 0.059 3.941 15 C -0.106 4.106 16 C -0.115 4.115 17 C -0.111 4.111 18 C 0.105 3.895 19 H 0.023 0.977 20 C -0.118 4.118 21 C 0.082 3.918 22 O -0.595 6.595 23 H 0.026 0.974 24 H 0.043 0.957 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.058 0.942 28 H 0.259 0.741 29 H 0.053 0.947 30 H 0.007 0.993 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.036 0.964 40 H 0.069 0.931 41 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.488 3.497 13.139 13.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.154 4.154 3 C 0.114 3.886 4 H 0.011 0.989 5 C -0.580 4.580 6 H 0.079 0.921 7 C -0.177 4.177 8 N -0.551 5.551 9 Si 0.761 3.239 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.194 1.194 13 N -0.251 5.251 14 C -0.070 4.070 15 C -0.144 4.144 16 C -0.153 4.153 17 C -0.149 4.149 18 C -0.004 4.004 19 H 0.041 0.959 20 C -0.155 4.155 21 C 0.004 3.996 22 O -0.403 6.403 23 H 0.046 0.954 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.025 0.975 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.088 0.912 41 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -2.326 3.214 12.611 13.220 hybrid contribution 2.229 0.105 -0.814 2.376 sum -0.097 3.318 11.797 12.255 Atomic orbital electron populations 1.21573 0.96825 0.99804 1.00210 1.21768 0.94365 0.98572 1.00708 1.18990 0.92262 0.91622 0.85683 0.98866 1.22051 0.93983 1.36707 1.05266 0.92077 1.25546 1.00993 0.95849 0.95280 1.70078 1.36280 1.42230 1.06524 0.85902 0.82422 0.78451 0.77097 1.20565 1.21235 1.19438 1.62304 1.43367 1.10483 1.08923 1.21998 0.98015 0.88811 0.98153 1.21551 0.99109 1.00132 0.93608 1.21552 0.98675 0.95876 0.99153 1.21756 1.01643 0.96042 0.95452 1.21279 0.92821 0.94218 0.92057 0.95931 1.21847 0.97711 0.96218 0.99728 1.22236 0.97150 0.81310 0.98880 1.86489 1.69638 1.25723 1.58436 0.95433 0.93803 0.92215 0.93754 0.92373 0.93216 0.92834 0.97497 0.91202 0.90570 0.89727 0.93124 0.91367 0.90477 0.92480 0.90819 0.94559 0.91247 0.75803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.28 9.86 71.98 0.71 -4.57 16 2 C -0.12 -5.65 4.98 30.59 0.15 -5.50 16 3 C 0.22 11.11 1.60 44.17 0.07 11.18 16 4 H -0.01 -0.38 7.61 -2.39 -0.02 -0.40 16 5 C -0.54 -29.13 6.19 25.60 0.16 -28.98 16 6 H 0.06 3.28 5.16 -2.91 -0.01 3.26 16 7 C 0.02 1.28 5.14 84.65 0.44 1.72 16 8 N -0.91 -53.37 11.65 21.45 0.25 -53.12 16 9 Si 0.93 44.46 29.55 68.60 2.03 46.49 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 13 N -0.53 -21.77 3.82 -850.44 -3.25 -25.02 16 14 C 0.06 2.21 5.34 86.33 0.46 2.67 16 15 C -0.11 -2.94 6.09 30.65 0.19 -2.75 16 16 C -0.12 -2.90 6.00 30.68 0.18 -2.71 16 17 C -0.11 -3.12 4.98 30.65 0.15 -2.97 16 18 C 0.11 3.93 1.35 44.94 0.06 3.99 16 19 H 0.02 0.97 5.91 -2.39 -0.01 0.96 16 20 C -0.12 -4.56 3.32 30.59 0.10 -4.46 16 21 C 0.08 2.56 6.52 71.98 0.47 3.03 16 22 O -0.59 -18.76 13.66 -148.98 -2.04 -20.80 16 23 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.06 2.35 7.68 -2.39 -0.02 2.33 16 26 H 0.04 2.46 6.20 -2.38 -0.01 2.45 16 27 H 0.06 2.79 4.17 -2.39 -0.01 2.78 16 28 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 29 H 0.05 2.06 7.90 -2.39 -0.02 2.04 16 30 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.08 1.83 6.59 -2.39 -0.02 1.81 16 37 H 0.06 2.22 7.50 -2.39 -0.02 2.20 16 38 H 0.07 3.53 4.25 -2.38 -0.01 3.52 16 39 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.07 1.70 6.73 -2.39 -0.02 1.69 16 41 H 0.39 7.67 9.12 -74.05 -0.68 6.99 16 Total: -1.00 -63.32 301.76 0.46 -62.86 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.33 Total: 18.95 kcal Atomic # 6 Polarization: -32.50 SS G_CDS: 3.14 Total: -29.36 kcal Atomic # 7 Polarization: -75.14 SS G_CDS: -3.00 Total: -78.14 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -2.04 Total: -20.80 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -63.32 0.46 -62.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252434001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.190 kcal (2) G-P(sol) polarization free energy of solvation -63.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds