Wall clock time and date at job start Mon Mar 30 2020 04:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47402 * 2 1 4 4 H 1.08993 * 109.47465 * 177.48254 * 3 2 1 5 5 C 1.50701 * 109.46965 * 57.47875 * 3 2 1 6 6 H 1.08000 * 120.00153 * 240.00374 * 5 3 2 7 7 C 1.37877 * 120.00139 * 60.00296 * 5 3 2 8 8 N 1.31513 * 119.99926 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00223 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46702 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46950 * 120.00098 * 9 7 5 12 12 H 1.48494 * 109.47081 * 240.00248 * 9 7 5 13 13 N 1.46904 * 109.47208 * 297.48254 * 3 2 1 14 14 C 1.46895 * 110.99758 * 274.03526 * 13 3 2 15 15 H 1.09003 * 109.63182 * 35.01852 * 14 13 3 16 16 C 1.54245 * 109.62909 * 274.63389 * 14 13 3 17 17 C 1.45540 * 112.40951 * 160.30500 * 16 14 13 18 18 C 1.54236 * 112.40892 * 61.93333 * 17 16 14 19 19 C 1.50472 * 108.52419 * 280.02001 * 18 17 16 20 20 C 1.54066 * 112.50052 * 94.14839 * 19 18 17 21 21 C 1.50472 * 109.63063 * 155.60759 * 14 13 3 22 22 H 1.09007 * 108.87817 * 93.07954 * 21 14 13 23 23 O 1.42894 * 108.87749 * 334.63432 * 21 14 13 24 24 H 1.09000 * 109.47151 * 54.40683 * 1 2 3 25 25 H 1.08998 * 109.47409 * 294.40684 * 1 2 3 26 26 H 1.09000 * 109.46942 * 174.40835 * 1 2 3 27 27 H 1.08999 * 109.47407 * 119.99809 * 2 1 3 28 28 H 1.09003 * 109.47532 * 239.99976 * 2 1 3 29 29 H 0.96995 * 120.00353 * 180.02562 * 8 7 5 30 30 H 1.00902 * 111.00433 * 150.07655 * 13 3 2 31 31 H 1.08998 * 108.89317 * 281.05786 * 16 14 13 32 32 H 1.09001 * 108.89201 * 39.54404 * 16 14 13 33 33 H 1.08995 * 108.89477 * 182.69396 * 17 16 14 34 34 H 1.09002 * 108.89178 * 301.17848 * 17 16 14 35 35 H 1.09006 * 109.62565 * 39.72475 * 18 17 16 36 36 H 1.09000 * 109.62950 * 160.30437 * 18 17 16 37 37 H 1.09010 * 108.87179 * 214.92587 * 19 18 17 38 38 H 1.09000 * 108.87823 * 333.36632 * 19 18 17 39 39 H 1.09000 * 108.81443 * 79.14252 * 20 19 18 40 40 H 1.08994 * 108.81171 * 197.52867 * 20 19 18 41 41 H 0.96703 * 114.00646 * 179.97438 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1290 1.4428 0.0451 5 6 1.4873 2.1707 1.1980 6 1 0.8713 3.0470 1.0605 7 6 1.7680 1.7182 2.4698 8 7 2.5186 0.6513 2.6374 9 14 1.0835 2.6212 3.9549 10 1 0.2773 3.7823 3.4998 11 1 0.2252 1.6999 4.7421 12 1 2.2044 3.0997 4.8032 13 7 1.6007 2.1172 -1.2287 14 6 2.5431 1.8736 -2.3288 15 1 2.9498 0.8656 -2.2462 16 6 3.6908 2.9021 -2.2653 17 6 4.8675 2.4668 -3.0029 18 6 4.5834 2.2827 -4.5077 19 6 3.9077 0.9532 -4.7075 20 6 2.3715 1.0690 -4.7237 21 6 1.8335 2.0301 -3.6464 22 1 1.9582 3.0555 -3.9946 23 8 0.4405 1.7760 -3.4544 24 1 -0.3633 0.5981 -0.8357 25 1 -0.3634 0.4246 0.9358 26 1 -0.3633 -1.0228 -0.1001 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 2.7158 0.3327 3.5321 30 1 1.4745 3.1061 -1.0729 31 1 3.3419 3.8465 -2.6830 32 1 3.9661 3.0598 -1.2225 33 1 5.6556 3.2097 -2.8807 34 1 5.2119 1.5185 -2.5901 35 1 3.9296 3.0819 -4.8572 36 1 5.5213 2.3040 -5.0627 37 1 4.2394 0.5280 -5.6549 38 1 4.2024 0.2829 -3.9000 39 1 2.0563 1.4274 -5.7036 40 1 1.9428 0.0809 -4.5569 41 1 -0.0889 1.8572 -4.2595 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252880694.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:50 Heat of formation + Delta-G solvation = -66.701628 kcal Electronic energy + Delta-G solvation = -18965.905373 eV Core-core repulsion = 16265.906148 eV Total energy + Delta-G solvation = -2699.999225 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.26536 -35.69168 -35.54282 -32.79589 -31.40943 -30.58916 -28.51687 -25.92296 -24.16224 -23.33591 -22.78334 -20.45726 -19.30663 -18.77294 -16.71502 -16.22152 -15.18342 -14.99470 -14.66609 -14.22647 -13.95597 -13.43869 -13.26199 -12.84715 -12.73590 -12.39189 -11.84786 -11.81999 -11.51814 -11.22531 -11.05356 -10.89633 -10.77468 -10.55253 -10.43222 -10.27797 -10.20892 -10.08484 -9.78977 -9.50510 -9.26554 -9.17551 -8.65296 -8.38846 -6.95206 -5.94129 -3.98269 3.32562 3.40755 3.44984 4.46186 4.64677 4.73715 4.87523 5.12355 5.27875 5.32713 5.37130 5.44518 5.54031 5.59516 5.73793 5.84518 5.95663 6.09695 6.20958 6.25245 6.31181 6.39133 6.46335 6.52271 6.63396 6.67572 6.75705 6.88391 7.04238 7.43087 7.46871 7.65345 7.89601 7.90558 7.97601 8.21686 8.39487 8.57080 8.84581 9.14081 9.66108 11.11995 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030759 B = 0.007017 C = 0.006457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.090438 B = 3989.080545 C = 4335.173622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.097 4.097 3 C 0.216 3.784 4 H -0.002 1.002 5 C -0.508 4.508 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.890 5.890 9 Si 0.890 3.110 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.286 1.286 13 N -0.658 5.658 14 C 0.100 3.900 15 H 0.075 0.925 16 C -0.150 4.150 17 C -0.114 4.114 18 C -0.118 4.118 19 C -0.116 4.116 20 C -0.149 4.149 21 C 0.120 3.880 22 H 0.037 0.963 23 O -0.530 6.530 24 H 0.055 0.945 25 H 0.047 0.953 26 H 0.008 0.992 27 H 0.080 0.920 28 H 0.007 0.993 29 H 0.258 0.742 30 H 0.328 0.672 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.390 2.175 -13.830 14.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.136 4.136 3 C 0.109 3.891 4 H 0.015 0.985 5 C -0.546 4.546 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.529 5.529 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.213 1.213 13 N -0.287 5.287 14 C -0.012 4.012 15 H 0.093 0.907 16 C -0.190 4.190 17 C -0.152 4.152 18 C -0.155 4.155 19 C -0.154 4.154 20 C -0.187 4.187 21 C 0.060 3.940 22 H 0.055 0.945 23 O -0.331 6.331 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.027 0.973 27 H 0.099 0.901 28 H 0.025 0.975 29 H 0.068 0.932 30 H 0.145 0.855 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 2.225 1.449 -13.213 13.477 hybrid contribution 0.363 1.034 0.511 1.209 sum 2.588 2.483 -12.701 13.198 Atomic orbital electron populations 1.21428 0.97470 0.96961 1.01699 1.21369 0.95234 0.98224 0.98737 1.19120 0.93045 0.91689 0.85295 0.98486 1.21255 1.31158 1.11781 0.90440 0.92372 1.24876 0.95210 0.95046 0.98763 1.69907 1.37865 1.23319 1.21818 0.86565 0.78742 0.79846 0.83009 1.19815 1.21069 1.21279 1.60582 1.45859 1.15656 1.06585 1.21266 0.90130 0.98437 0.91343 0.90663 1.21261 0.96754 0.99584 1.01359 1.20454 0.98194 1.01702 0.94820 1.21366 0.99899 0.97712 0.96549 1.21270 0.94645 0.97848 1.01598 1.22679 0.96110 1.01219 0.98742 1.21680 0.82282 0.95470 0.94608 0.94478 1.86972 1.17492 1.93507 1.35086 0.92597 0.93347 0.97322 0.90131 0.97466 0.93181 0.85501 0.92712 0.91100 0.92802 0.92094 0.91899 0.92287 0.92631 0.91716 0.92734 0.91330 0.80394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.84 9.45 37.15 0.35 -2.49 16 2 C -0.10 -2.46 5.56 -26.73 -0.15 -2.61 16 3 C 0.22 5.46 2.01 -68.86 -0.14 5.33 16 4 H 0.00 -0.07 7.24 -51.93 -0.38 -0.44 16 5 C -0.51 -13.88 7.31 -34.44 -0.25 -14.14 16 6 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -25.59 11.35 55.43 0.63 -24.96 16 9 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 N -0.66 -14.21 4.35 -101.60 -0.44 -14.65 16 14 C 0.10 1.79 1.84 -68.33 -0.13 1.67 16 15 H 0.08 1.49 6.04 -51.93 -0.31 1.18 16 16 C -0.15 -2.41 4.56 -29.60 -0.13 -2.54 16 17 C -0.11 -1.54 5.26 -29.60 -0.16 -1.69 16 18 C -0.12 -1.35 5.61 -27.35 -0.15 -1.50 16 19 C -0.12 -1.37 5.31 -27.44 -0.15 -1.52 16 20 C -0.15 -1.87 5.44 -25.62 -0.14 -2.01 16 21 C 0.12 1.80 2.86 -27.44 -0.08 1.72 16 22 H 0.04 0.53 6.63 -51.92 -0.34 0.19 16 23 O -0.53 -8.71 12.31 -35.23 -0.43 -9.14 16 24 H 0.05 1.34 7.52 -51.93 -0.39 0.95 16 25 H 0.05 1.23 7.36 -51.93 -0.38 0.85 16 26 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.08 2.25 6.14 -51.93 -0.32 1.93 16 28 H 0.01 0.16 7.48 -51.93 -0.39 -0.23 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.33 7.12 7.96 -39.29 -0.31 6.81 16 31 H 0.05 0.82 7.47 -51.93 -0.39 0.43 16 32 H 0.07 1.31 7.42 -51.93 -0.39 0.93 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.87 7.47 -51.93 -0.39 0.49 16 35 H 0.06 0.71 6.98 -51.93 -0.36 0.35 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.05 0.57 8.14 -51.92 -0.42 0.14 16 38 H 0.06 0.85 6.64 -51.93 -0.34 0.50 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 41 H 0.35 4.10 9.04 45.56 0.41 4.51 16 LS Contribution 305.53 15.07 4.60 4.60 Total: -1.00 -29.32 305.53 -8.23 -37.55 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -6.35 Total: 8.22 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -1.22 Total: -18.15 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.19 Total: -39.62 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.43 Total: -9.14 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.32 -8.23 -37.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252880694.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.149 kcal (2) G-P(sol) polarization free energy of solvation -29.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds