Wall clock time and date at job start Mon Mar 30 2020 04:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47205 * 2 1 4 4 H 1.09003 * 109.47496 * 306.39216 * 3 2 1 5 5 C 1.50703 * 109.47351 * 186.38816 * 3 2 1 6 6 H 1.07996 * 120.00041 * 240.00212 * 5 3 2 7 7 C 1.37873 * 119.99968 * 60.00268 * 5 3 2 8 8 N 1.31521 * 119.99876 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00176 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47180 * 59.99527 * 9 7 5 11 11 H 1.48503 * 109.46892 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46574 * 299.99637 * 9 7 5 13 13 N 1.46906 * 109.46900 * 66.38836 * 3 2 1 14 14 C 1.46896 * 110.99885 * 40.73123 * 13 3 2 15 15 C 1.46896 * 110.99844 * 276.77312 * 13 3 2 16 16 H 1.08998 * 109.46888 * 54.20265 * 15 13 3 17 17 C 1.53006 * 109.46751 * 174.19762 * 15 13 3 18 18 C 1.53001 * 109.46957 * 180.02562 * 17 15 13 19 19 C 1.52998 * 109.46899 * 299.99814 * 18 17 15 20 20 C 1.52996 * 109.47229 * 60.00223 * 19 18 17 21 21 C 1.52998 * 109.47461 * 294.19794 * 15 13 3 22 22 H 1.08996 * 109.47274 * 60.00360 * 21 15 13 23 23 O 1.42898 * 109.47077 * 300.00042 * 21 15 13 24 24 H 1.08995 * 109.47092 * 43.38034 * 1 2 3 25 25 H 1.08999 * 109.47249 * 163.38191 * 1 2 3 26 26 H 1.09007 * 109.46913 * 283.37603 * 1 2 3 27 27 H 1.09001 * 109.47033 * 240.00334 * 2 1 3 28 28 H 1.08996 * 109.47497 * 120.00540 * 2 1 3 29 29 H 0.96997 * 119.99564 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.47228 * 288.57309 * 14 13 3 31 31 H 1.09000 * 109.46997 * 48.57084 * 14 13 3 32 32 H 1.08999 * 109.46922 * 168.56973 * 14 13 3 33 33 H 1.09005 * 109.46914 * 300.00156 * 17 15 13 34 34 H 1.08994 * 109.47220 * 60.00149 * 17 15 13 35 35 H 1.08998 * 109.47274 * 179.97438 * 18 17 15 36 36 H 1.08994 * 109.47493 * 59.99753 * 18 17 15 37 37 H 1.08998 * 109.47454 * 300.00216 * 19 18 17 38 38 H 1.09003 * 109.47041 * 180.02562 * 19 18 17 39 39 H 1.09007 * 109.47484 * 179.97438 * 20 19 18 40 40 H 1.08999 * 109.47541 * 60.00070 * 20 19 18 41 41 H 0.96700 * 113.99904 * 180.02562 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5863 1.9883 -0.8272 5 6 3.5387 1.4454 -0.1581 6 1 4.1616 1.8837 0.6076 7 6 4.1146 0.8886 -1.2802 8 7 3.3561 0.3543 -2.2124 9 14 5.9724 0.8916 -1.4759 10 1 6.5901 0.1477 -0.3488 11 1 6.3360 0.2387 -2.7592 12 1 6.4678 2.2916 -1.4755 13 7 1.6802 2.0890 1.2691 14 6 1.8669 1.1698 2.3996 15 6 0.3036 2.6000 1.2278 16 1 -0.3747 1.7944 0.9470 17 6 -0.0834 3.1348 2.6081 18 6 -1.5174 3.6666 2.5653 19 6 -1.6124 4.7947 1.5362 20 6 -1.2254 4.2600 0.1560 21 6 0.2091 3.7283 0.1988 22 1 0.4848 3.3474 -0.7845 23 8 1.0984 4.7845 0.5670 24 1 -0.3633 0.7469 -0.7058 25 1 -0.3634 -0.9847 -0.2939 26 1 -0.3633 0.2378 0.9999 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.7613 -0.0377 -3.0016 30 1 1.0975 0.3983 2.3716 31 1 2.8503 0.7048 2.3312 32 1 1.7915 1.7244 3.3350 33 1 -0.0161 2.3309 3.3412 34 1 0.5949 3.9404 2.8889 35 1 -1.7934 4.0471 3.5487 36 1 -2.1955 2.8607 2.2846 37 1 -0.9343 5.6006 1.8168 38 1 -2.6340 5.1739 1.5060 39 1 -1.2935 5.0637 -0.5773 40 1 -1.9035 3.4541 -0.1248 41 1 1.0906 5.5355 -0.0421 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252919909.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:04 Heat of formation + Delta-G solvation = -49.042652 kcal Electronic energy + Delta-G solvation = -19380.156313 eV Core-core repulsion = 16680.922838 eV Total energy + Delta-G solvation = -2699.233475 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.39309 -36.55276 -34.50373 -32.65836 -30.93207 -29.60136 -28.77908 -26.99486 -24.68613 -22.93427 -21.91173 -20.99185 -19.24509 -18.79816 -16.59003 -15.93827 -15.65580 -14.91108 -14.63831 -14.11674 -14.03340 -13.26326 -13.11206 -12.82479 -12.55626 -12.32892 -11.76965 -11.71164 -11.54571 -11.20565 -11.09669 -10.85950 -10.77777 -10.72115 -10.61248 -10.45516 -10.19972 -10.07091 -9.77372 -9.60198 -9.46971 -9.02415 -8.80702 -8.23305 -6.83805 -5.92601 -3.94443 3.38040 3.41448 3.45789 4.47778 4.77929 4.91407 5.03394 5.21752 5.34811 5.38492 5.52368 5.73293 5.78231 5.80707 5.89713 6.01006 6.09365 6.14352 6.15706 6.21664 6.24725 6.33521 6.41860 6.44621 6.47379 6.59781 6.65913 6.77391 6.84555 6.92661 7.05861 7.32484 7.54953 7.78946 7.97258 8.27281 8.35787 8.52036 8.73566 9.13046 9.69709 11.13788 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030440 B = 0.007757 C = 0.007363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.634977 B = 3608.618936 C = 3801.668519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.156 4.156 3 C 0.216 3.784 4 H 0.037 0.963 5 C -0.487 4.487 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.895 3.105 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.518 5.518 14 C 0.034 3.966 15 C 0.076 3.924 16 H 0.062 0.938 17 C -0.112 4.112 18 C -0.116 4.116 19 C -0.112 4.112 20 C -0.153 4.153 21 C 0.115 3.885 22 H 0.058 0.942 23 O -0.540 6.540 24 H 0.044 0.956 25 H 0.033 0.967 26 H 0.040 0.960 27 H 0.098 0.902 28 H 0.040 0.960 29 H 0.259 0.741 30 H 0.013 0.987 31 H 0.068 0.932 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.573 5.125 5.558 12.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.195 4.195 3 C 0.110 3.890 4 H 0.055 0.945 5 C -0.526 4.526 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.723 3.277 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.203 1.203 13 N -0.241 5.241 14 C -0.114 4.114 15 C -0.033 4.033 16 H 0.079 0.921 17 C -0.149 4.149 18 C -0.155 4.155 19 C -0.149 4.149 20 C -0.191 4.191 21 C 0.056 3.944 22 H 0.076 0.924 23 O -0.343 6.343 24 H 0.063 0.937 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.116 0.884 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.032 0.968 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -9.095 5.018 5.950 11.971 hybrid contribution 0.243 -0.446 -0.881 1.017 sum -8.852 4.572 5.069 11.178 Atomic orbital electron populations 1.22128 0.99830 0.99588 0.99224 1.22310 0.91441 1.02659 1.03124 1.19388 0.95648 0.88303 0.85706 0.94486 1.21129 0.91256 1.35815 1.04372 0.92096 1.24926 0.97936 0.95736 0.95942 1.69868 1.34579 1.39956 1.09491 0.86612 0.85907 0.78170 0.76988 1.20471 1.21564 1.20349 1.62270 1.19449 1.37384 1.05032 1.22266 1.00844 0.94482 0.93816 1.21961 0.92314 0.94828 0.94149 0.92057 1.21590 0.95521 1.00830 0.96997 1.21520 0.97495 0.97956 0.98484 1.21410 1.00187 0.98476 0.94841 1.22305 0.98599 1.00826 0.97415 1.21827 0.86649 0.87954 0.97988 0.92399 1.86673 1.64647 1.29830 1.53122 0.93722 0.94795 0.94144 0.88400 0.94133 0.93149 0.96824 0.91361 0.93713 0.92598 0.90709 0.92517 0.92728 0.91414 0.92987 0.92164 0.91633 0.79620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 8.14 37.16 0.30 -2.68 16 2 C -0.16 -3.67 4.74 -26.73 -0.13 -3.80 16 3 C 0.22 5.36 1.74 -68.86 -0.12 5.24 16 4 H 0.04 1.01 5.71 -51.93 -0.30 0.71 16 5 C -0.49 -13.54 8.19 -34.44 -0.28 -13.83 16 6 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -25.58 11.29 55.43 0.63 -24.95 16 9 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.52 -11.30 4.34 -228.30 -0.99 -12.29 16 14 C 0.03 0.69 7.19 60.06 0.43 1.12 16 15 C 0.08 1.40 1.40 -67.71 -0.09 1.31 16 16 H 0.06 1.14 3.80 -51.93 -0.20 0.94 16 17 C -0.11 -1.79 4.50 -26.73 -0.12 -1.91 16 18 C -0.12 -1.53 5.92 -26.73 -0.16 -1.69 16 19 C -0.11 -1.41 5.78 -26.73 -0.15 -1.56 16 20 C -0.15 -2.10 5.64 -26.71 -0.15 -2.25 16 21 C 0.12 2.02 3.07 -26.71 -0.08 1.93 16 22 H 0.06 1.16 6.22 -51.93 -0.32 0.84 16 23 O -0.54 -9.65 11.84 -35.23 -0.42 -10.06 16 24 H 0.04 0.88 7.56 -51.93 -0.39 0.49 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.04 0.74 5.10 -51.93 -0.26 0.47 16 27 H 0.10 2.61 5.92 -51.93 -0.31 2.30 16 28 H 0.04 0.94 6.04 -51.93 -0.31 0.63 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.01 0.26 5.67 -51.93 -0.29 -0.04 16 31 H 0.07 1.47 7.33 -51.93 -0.38 1.09 16 32 H 0.04 0.80 6.69 -51.93 -0.35 0.46 16 33 H 0.06 0.87 6.48 -51.93 -0.34 0.53 16 34 H 0.07 1.32 7.68 -51.93 -0.40 0.92 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.89 7.68 -51.93 -0.40 0.49 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.36 4.90 9.08 45.56 0.41 5.32 16 LS Contribution 295.86 15.07 4.46 4.46 Total: -1.00 -29.30 295.86 -7.91 -37.21 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.92 Total: 5.59 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -0.65 Total: -16.69 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: -0.36 Total: -37.24 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -0.42 Total: -10.06 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.30 -7.91 -37.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252919909.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.832 kcal (2) G-P(sol) polarization free energy of solvation -29.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds