Wall clock time and date at job start Mon Mar 30 2020 04:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47205 * 2 1 4 4 H 1.09003 * 109.47496 * 306.39216 * 3 2 1 5 5 C 1.50703 * 109.47351 * 186.38816 * 3 2 1 6 6 H 1.07996 * 120.00041 * 240.00212 * 5 3 2 7 7 C 1.37873 * 119.99968 * 60.00268 * 5 3 2 8 8 N 1.31521 * 119.99876 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00176 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47180 * 59.99527 * 9 7 5 11 11 H 1.48503 * 109.46892 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46574 * 299.99637 * 9 7 5 13 13 N 1.46906 * 109.46900 * 66.38836 * 3 2 1 14 14 C 1.46896 * 110.99885 * 40.73123 * 13 3 2 15 15 C 1.46896 * 110.99844 * 276.77312 * 13 3 2 16 16 H 1.08998 * 109.46888 * 54.20265 * 15 13 3 17 17 C 1.53006 * 109.46751 * 174.19762 * 15 13 3 18 18 C 1.53001 * 109.46957 * 180.02562 * 17 15 13 19 19 C 1.52998 * 109.46899 * 299.99814 * 18 17 15 20 20 C 1.52996 * 109.47229 * 60.00223 * 19 18 17 21 21 C 1.52998 * 109.47461 * 294.19794 * 15 13 3 22 22 H 1.08996 * 109.47274 * 60.00360 * 21 15 13 23 23 O 1.42898 * 109.47077 * 300.00042 * 21 15 13 24 24 H 1.08995 * 109.47092 * 43.38034 * 1 2 3 25 25 H 1.08999 * 109.47249 * 163.38191 * 1 2 3 26 26 H 1.09007 * 109.46913 * 283.37603 * 1 2 3 27 27 H 1.09001 * 109.47033 * 240.00334 * 2 1 3 28 28 H 1.08996 * 109.47497 * 120.00540 * 2 1 3 29 29 H 0.96997 * 119.99564 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.47228 * 288.57309 * 14 13 3 31 31 H 1.09000 * 109.46997 * 48.57084 * 14 13 3 32 32 H 1.08999 * 109.46922 * 168.56973 * 14 13 3 33 33 H 1.09005 * 109.46914 * 300.00156 * 17 15 13 34 34 H 1.08994 * 109.47220 * 60.00149 * 17 15 13 35 35 H 1.08998 * 109.47274 * 179.97438 * 18 17 15 36 36 H 1.08994 * 109.47493 * 59.99753 * 18 17 15 37 37 H 1.08998 * 109.47454 * 300.00216 * 19 18 17 38 38 H 1.09003 * 109.47041 * 180.02562 * 19 18 17 39 39 H 1.09007 * 109.47484 * 179.97438 * 20 19 18 40 40 H 1.08999 * 109.47541 * 60.00070 * 20 19 18 41 41 H 0.96700 * 113.99904 * 180.02562 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5863 1.9883 -0.8272 5 6 3.5387 1.4454 -0.1581 6 1 4.1616 1.8837 0.6076 7 6 4.1146 0.8886 -1.2802 8 7 3.3561 0.3543 -2.2124 9 14 5.9724 0.8916 -1.4759 10 1 6.5901 0.1477 -0.3488 11 1 6.3360 0.2387 -2.7592 12 1 6.4678 2.2916 -1.4755 13 7 1.6802 2.0890 1.2691 14 6 1.8669 1.1698 2.3996 15 6 0.3036 2.6000 1.2278 16 1 -0.3747 1.7944 0.9470 17 6 -0.0834 3.1348 2.6081 18 6 -1.5174 3.6666 2.5653 19 6 -1.6124 4.7947 1.5362 20 6 -1.2254 4.2600 0.1560 21 6 0.2091 3.7283 0.1988 22 1 0.4848 3.3474 -0.7845 23 8 1.0984 4.7845 0.5670 24 1 -0.3633 0.7469 -0.7058 25 1 -0.3634 -0.9847 -0.2939 26 1 -0.3633 0.2378 0.9999 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.7613 -0.0377 -3.0016 30 1 1.0975 0.3983 2.3716 31 1 2.8503 0.7048 2.3312 32 1 1.7915 1.7244 3.3350 33 1 -0.0161 2.3309 3.3412 34 1 0.5949 3.9404 2.8889 35 1 -1.7934 4.0471 3.5487 36 1 -2.1955 2.8607 2.2846 37 1 -0.9343 5.6006 1.8168 38 1 -2.6340 5.1739 1.5060 39 1 -1.2935 5.0637 -0.5773 40 1 -1.9035 3.4541 -0.1248 41 1 1.0906 5.5355 -0.0421 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252919909.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:03 Heat of formation + Delta-G solvation = -69.454120 kcal Electronic energy + Delta-G solvation = -19381.041420 eV Core-core repulsion = 16680.922838 eV Total energy + Delta-G solvation = -2700.118582 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.83528 -38.13544 -35.82347 -34.59724 -32.65797 -30.89398 -30.22738 -28.84030 -26.37424 -24.71921 -23.17944 -22.36148 -20.81444 -20.36635 -18.41705 -17.48537 -17.25434 -16.61403 -16.21984 -15.71023 -15.36484 -14.78552 -14.64145 -14.39791 -13.83284 -13.74948 -13.36107 -13.34169 -13.04578 -12.94407 -12.71089 -12.68110 -12.34790 -12.25238 -12.06437 -11.95829 -11.86932 -11.59320 -11.39969 -11.32422 -10.84870 -10.71612 -10.52126 -10.23620 -8.54432 -8.05581 -6.14874 1.41196 1.42625 1.50366 2.44791 3.20853 3.37521 3.59770 3.89992 4.03625 4.12845 4.34254 4.39266 4.45084 4.46938 4.58429 4.59568 4.61456 4.71920 4.74920 4.83633 4.92617 4.97439 5.08019 5.09304 5.15345 5.23899 5.31404 5.33336 5.35299 5.41834 5.48105 5.62849 5.66551 5.79309 5.90784 6.37370 6.65910 6.88069 6.99724 7.11906 7.53621 8.98443 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030440 B = 0.007757 C = 0.007363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.634977 B = 3608.618936 C = 3801.668519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.149 4.149 3 C 0.225 3.775 4 H 0.009 0.991 5 C -0.508 4.508 6 H 0.044 0.956 7 C 0.011 3.989 8 N -0.919 5.919 9 Si 0.952 3.048 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.277 1.277 13 N -0.535 5.535 14 C 0.040 3.960 15 C 0.072 3.928 16 H 0.063 0.937 17 C -0.105 4.105 18 C -0.113 4.113 19 C -0.108 4.108 20 C -0.145 4.145 21 C 0.115 3.885 22 H 0.021 0.979 23 O -0.559 6.559 24 H 0.040 0.960 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.259 0.741 30 H 0.024 0.976 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.036 5.663 6.576 14.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.189 4.189 3 C 0.118 3.882 4 H 0.026 0.974 5 C -0.546 4.546 6 H 0.063 0.937 7 C -0.187 4.187 8 N -0.560 5.560 9 Si 0.779 3.221 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.203 1.203 13 N -0.258 5.258 14 C -0.109 4.109 15 C -0.036 4.036 16 H 0.081 0.919 17 C -0.143 4.143 18 C -0.151 4.151 19 C -0.145 4.145 20 C -0.183 4.183 21 C 0.055 3.945 22 H 0.039 0.961 23 O -0.364 6.364 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -10.568 5.568 6.974 13.832 hybrid contribution 0.717 -0.577 -1.194 1.508 sum -9.851 4.991 5.780 12.464 Atomic orbital electron populations 1.21974 0.96737 1.00495 1.00321 1.22120 0.94204 1.01293 1.01262 1.19079 0.93848 0.88814 0.86464 0.97367 1.21401 0.93054 1.35958 1.04230 0.93746 1.25610 1.01940 0.95431 0.95689 1.69993 1.36010 1.40275 1.09701 0.85703 0.81157 0.78085 0.77179 1.19938 1.20820 1.20273 1.62174 1.22217 1.37432 1.04006 1.22222 0.99849 0.94712 0.94084 1.22100 0.90226 0.95117 0.96200 0.91939 1.21531 0.97267 1.00321 0.95155 1.21524 0.95271 0.98404 0.99903 1.21404 1.01545 0.98029 0.93535 1.22225 0.95584 1.01462 0.99032 1.21770 0.89037 0.87920 0.95745 0.96067 1.86616 1.65337 1.30553 1.53935 0.94108 0.93183 0.92252 0.91719 0.94361 0.93167 0.95774 0.93676 0.91571 0.92091 0.92524 0.90464 0.91777 0.92038 0.90302 0.90527 0.91068 0.77775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.35 8.14 71.98 0.59 -4.76 16 2 C -0.15 -7.14 4.74 30.59 0.14 -7.00 16 3 C 0.23 11.51 1.74 44.17 0.08 11.59 16 4 H 0.01 0.48 5.71 -2.39 -0.01 0.47 16 5 C -0.51 -29.13 8.19 25.60 0.21 -28.92 16 6 H 0.04 2.63 7.81 -2.91 -0.02 2.60 16 7 C 0.01 0.63 5.29 84.65 0.45 1.08 16 8 N -0.92 -53.58 11.29 21.45 0.24 -53.33 16 9 Si 0.95 45.33 29.54 68.60 2.03 47.35 16 10 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 13 N -0.53 -23.54 4.34 -876.21 -3.80 -27.34 16 14 C 0.04 1.57 7.19 127.69 0.92 2.48 16 15 C 0.07 2.58 1.40 44.92 0.06 2.65 16 16 H 0.06 2.24 3.80 -2.39 -0.01 2.23 16 17 C -0.10 -3.15 4.50 30.60 0.14 -3.01 16 18 C -0.11 -2.58 5.92 30.59 0.18 -2.40 16 19 C -0.11 -2.36 5.78 30.59 0.18 -2.18 16 20 C -0.14 -3.65 5.64 30.61 0.17 -3.48 16 21 C 0.11 3.99 3.07 30.61 0.09 4.08 16 22 H 0.02 0.89 6.22 -2.39 -0.01 0.87 16 23 O -0.56 -19.96 11.84 -148.98 -1.76 -21.72 16 24 H 0.04 1.59 7.56 -2.39 -0.02 1.57 16 25 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.06 2.06 5.10 -2.38 -0.01 2.05 16 27 H 0.06 3.54 5.92 -2.39 -0.01 3.53 16 28 H 0.04 1.80 6.04 -2.39 -0.01 1.78 16 29 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.02 0.89 5.67 -2.39 -0.01 0.87 16 31 H 0.04 1.96 7.33 -2.39 -0.02 1.94 16 32 H 0.07 2.30 6.69 -2.39 -0.02 2.29 16 33 H 0.06 1.74 6.48 -2.38 -0.02 1.73 16 34 H 0.06 1.91 7.68 -2.39 -0.02 1.89 16 35 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 36 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.06 1.44 7.68 -2.39 -0.02 1.42 16 38 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 40 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.38 10.19 9.08 -74.06 -0.67 9.51 16 Total: -1.00 -64.20 295.86 0.25 -63.94 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.34 Total: 20.96 kcal Atomic # 6 Polarization: -33.07 SS G_CDS: 3.21 Total: -29.86 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -3.56 Total: -80.67 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -1.76 Total: -21.72 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -64.20 0.25 -63.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252919909.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.510 kcal (2) G-P(sol) polarization free energy of solvation -64.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds