Wall clock time and date at job start Mon Mar 30 2020 04:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46811 * 2 1 4 4 H 1.08994 * 109.46767 * 181.87128 * 3 2 1 5 5 C 1.50697 * 109.47097 * 61.86365 * 3 2 1 6 6 H 1.07997 * 120.00028 * 239.99649 * 5 3 2 7 7 C 1.37882 * 119.99985 * 60.00672 * 5 3 2 8 8 N 1.31517 * 119.99771 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00070 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47388 * 89.99683 * 9 7 5 11 11 H 1.48507 * 109.46997 * 209.99544 * 9 7 5 12 12 H 1.48507 * 109.47015 * 329.99408 * 9 7 5 13 13 N 1.46899 * 109.46700 * 301.86496 * 3 2 1 14 14 C 1.46903 * 110.99707 * 177.66257 * 13 3 2 15 15 C 1.46900 * 111.00478 * 301.61498 * 13 3 2 16 16 H 1.09009 * 109.46573 * 52.88205 * 15 13 3 17 17 C 1.52994 * 109.47130 * 292.88072 * 15 13 3 18 18 C 1.53008 * 109.46963 * 179.97438 * 17 15 13 19 19 C 1.53000 * 109.47226 * 59.99740 * 18 17 15 20 20 C 1.53001 * 109.46933 * 299.99836 * 19 18 17 21 21 C 1.52998 * 109.47478 * 172.87343 * 15 13 3 22 22 H 1.08998 * 109.46624 * 60.00058 * 21 15 13 23 23 O 1.42903 * 109.47430 * 300.00711 * 21 15 13 24 24 H 1.08998 * 109.47221 * 174.94202 * 1 2 3 25 25 H 1.08998 * 109.47345 * 54.94159 * 1 2 3 26 26 H 1.09002 * 109.47022 * 294.94132 * 1 2 3 27 27 H 1.08995 * 109.46898 * 119.99629 * 2 1 3 28 28 H 1.08992 * 109.47038 * 240.00213 * 2 1 3 29 29 H 0.96999 * 119.99813 * 180.02562 * 8 7 5 30 30 H 1.09005 * 109.47145 * 60.00425 * 14 13 3 31 31 H 1.09001 * 109.47452 * 179.97438 * 14 13 3 32 32 H 1.08998 * 109.47620 * 300.00178 * 14 13 3 33 33 H 1.09000 * 109.46962 * 299.99319 * 17 15 13 34 34 H 1.08993 * 109.47357 * 59.99651 * 17 15 13 35 35 H 1.09001 * 109.46955 * 179.97438 * 18 17 15 36 36 H 1.09000 * 109.46866 * 299.99549 * 18 17 15 37 37 H 1.08998 * 109.46994 * 59.99712 * 19 18 17 38 38 H 1.08998 * 109.47163 * 180.02562 * 19 18 17 39 39 H 1.09000 * 109.47283 * 179.97438 * 20 19 18 40 40 H 1.08999 * 109.47827 * 300.00149 * 20 19 18 41 41 H 0.96695 * 114.00011 * 179.97438 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1294 1.4428 -0.0336 5 6 1.5757 2.1395 1.2529 6 1 0.9522 3.0185 1.1824 7 6 1.9471 1.6550 2.4892 8 7 2.7061 0.5844 2.5750 9 14 1.3722 2.5193 4.0422 10 1 0.0769 1.9402 4.4804 11 1 2.3839 2.3364 5.1139 12 1 1.1989 3.9683 3.7671 13 7 1.5137 2.1479 -1.1763 14 6 1.9383 3.5542 -1.1804 15 6 1.9151 1.4732 -2.4179 16 1 1.6384 0.4202 -2.3650 17 6 3.4297 1.5941 -2.5974 18 6 3.8478 0.8909 -3.8903 19 6 3.1396 1.5446 -5.0786 20 6 1.6250 1.4236 -4.8990 21 6 1.2069 2.1274 -3.6059 22 1 1.4835 3.1804 -3.6587 23 8 -0.2078 2.0145 -3.4382 24 1 -0.3633 -1.0236 -0.0906 25 1 -0.3634 0.5903 -0.8412 26 1 -0.3633 0.4334 0.9318 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 2.9671 0.2434 3.4447 30 1 3.0270 3.6050 -1.2005 31 1 1.5354 4.0528 -2.0620 32 1 1.5681 4.0482 -0.2821 33 1 3.7063 2.6471 -2.6503 34 1 3.9342 1.1280 -1.7511 35 1 4.9268 0.9774 -4.0184 36 1 3.5712 -0.1621 -3.8370 37 1 3.4161 2.5976 -5.1318 38 1 3.4371 1.0434 -5.9996 39 1 1.1203 1.8898 -5.7453 40 1 1.3483 0.3707 -4.8456 41 1 -0.7217 2.4091 -4.1560 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252919910.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:07 Heat of formation + Delta-G solvation = -57.674727 kcal Electronic energy + Delta-G solvation = -19260.535068 eV Core-core repulsion = 16560.927279 eV Total energy + Delta-G solvation = -2699.607790 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.39116 -36.26652 -35.02897 -32.83844 -30.86390 -29.62923 -28.54341 -26.14217 -24.94079 -23.00743 -22.05252 -21.20305 -19.62221 -18.38887 -16.85525 -16.00921 -15.30008 -15.10611 -14.32622 -14.11340 -13.91093 -13.39744 -13.23155 -12.80690 -12.59610 -12.40481 -11.93306 -11.79456 -11.43158 -11.22916 -11.05685 -10.90882 -10.79715 -10.71722 -10.47583 -10.39293 -10.24653 -10.05132 -9.65248 -9.41253 -9.37814 -9.22968 -8.69458 -8.30839 -6.90323 -5.93096 -3.95608 3.35084 3.41426 3.44572 4.46230 4.52554 4.80953 4.92818 5.18870 5.29896 5.38187 5.45267 5.51387 5.60030 5.71265 5.80303 5.84571 6.05012 6.18350 6.24610 6.29681 6.34999 6.37295 6.47309 6.57408 6.59394 6.72868 6.83043 6.89970 6.94860 7.31230 7.46353 7.53934 7.78562 7.89005 7.92492 8.09426 8.32536 8.45354 8.73333 9.10264 9.67765 11.13311 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.033672 B = 0.007290 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.348292 B = 3840.129400 C = 3949.252422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.110 4.110 3 C 0.216 3.784 4 H -0.001 1.001 5 C -0.493 4.493 6 H 0.061 0.939 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.892 3.108 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.516 5.516 14 C 0.034 3.966 15 C 0.091 3.909 16 H 0.087 0.913 17 C -0.153 4.153 18 C -0.117 4.117 19 C -0.115 4.115 20 C -0.151 4.151 21 C 0.115 3.885 22 H 0.048 0.952 23 O -0.544 6.544 24 H 0.011 0.989 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.011 0.989 29 H 0.258 0.742 30 H 0.012 0.988 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.065 1.908 -13.476 13.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.148 4.148 3 C 0.110 3.890 4 H 0.017 0.983 5 C -0.532 4.532 6 H 0.079 0.921 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.238 5.238 14 C -0.114 4.114 15 C -0.019 4.019 16 H 0.105 0.895 17 C -0.192 4.192 18 C -0.155 4.155 19 C -0.152 4.152 20 C -0.190 4.190 21 C 0.055 3.945 22 H 0.066 0.934 23 O -0.347 6.347 24 H 0.030 0.970 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.108 0.892 28 H 0.030 0.970 29 H 0.068 0.932 30 H 0.030 0.970 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -0.184 1.481 -12.714 12.801 hybrid contribution 0.552 0.688 0.308 0.935 sum 0.368 2.169 -12.405 12.599 Atomic orbital electron populations 1.21480 0.97210 0.97222 1.02128 1.21556 0.95313 0.98229 0.99714 1.19277 0.92464 0.90837 0.86440 0.98349 1.21111 1.30553 1.11775 0.89740 0.92052 1.24895 0.95321 0.95144 0.98857 1.69883 1.36681 1.22708 1.24104 0.86591 0.78349 0.79956 0.83056 1.20745 1.21489 1.20050 1.62254 1.59075 1.01188 1.01289 1.22251 0.96826 0.91377 1.00975 1.21655 0.90503 0.99803 0.89936 0.89544 1.22226 0.98340 1.00861 0.97758 1.21517 0.99374 0.99925 0.94685 1.21469 0.94826 1.00794 0.98136 1.22309 0.96452 1.02135 0.98074 1.21877 0.81424 0.97570 0.93606 0.93400 1.86751 1.16766 1.82320 1.48819 0.96985 0.92568 0.93010 0.89247 0.97042 0.93158 0.96993 0.94085 0.90921 0.92005 0.90725 0.92371 0.91998 0.92230 0.92244 0.92290 0.91258 0.79506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.89 9.50 37.16 0.35 -2.54 16 2 C -0.11 -2.71 5.05 -26.73 -0.13 -2.84 16 3 C 0.22 5.41 1.47 -68.86 -0.10 5.31 16 4 H 0.00 -0.03 6.58 -51.93 -0.34 -0.37 16 5 C -0.49 -13.47 6.85 -34.44 -0.24 -13.71 16 6 H 0.06 1.70 6.51 -52.49 -0.34 1.36 16 7 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 8 N -0.89 -25.57 11.31 55.43 0.63 -24.94 16 9 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 13 N -0.52 -11.16 3.53 -228.29 -0.81 -11.97 16 14 C 0.03 0.69 8.43 60.07 0.51 1.19 16 15 C 0.09 1.67 1.65 -67.72 -0.11 1.56 16 16 H 0.09 1.75 5.94 -51.92 -0.31 1.44 16 17 C -0.15 -2.55 4.49 -26.73 -0.12 -2.67 16 18 C -0.12 -1.56 5.92 -26.73 -0.16 -1.72 16 19 C -0.11 -1.33 5.92 -26.73 -0.16 -1.48 16 20 C -0.15 -1.86 5.55 -26.71 -0.15 -2.01 16 21 C 0.11 1.75 2.66 -26.71 -0.07 1.68 16 22 H 0.05 0.73 6.39 -51.93 -0.33 0.39 16 23 O -0.54 -8.76 13.18 -35.23 -0.46 -9.23 16 24 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.06 1.32 7.39 -51.93 -0.38 0.94 16 26 H 0.05 1.30 7.46 -51.93 -0.39 0.91 16 27 H 0.09 2.45 6.02 -51.93 -0.31 2.14 16 28 H 0.01 0.26 6.33 -51.93 -0.33 -0.07 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.01 0.23 6.48 -51.93 -0.34 -0.10 16 31 H 0.04 0.72 6.19 -51.93 -0.32 0.40 16 32 H 0.07 1.57 6.33 -51.93 -0.33 1.24 16 33 H 0.06 1.02 6.44 -51.93 -0.33 0.68 16 34 H 0.07 1.43 6.62 -51.93 -0.34 1.09 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.36 3.98 9.08 45.56 0.41 4.40 16 LS Contribution 300.73 15.07 4.53 4.53 Total: -1.00 -29.41 300.73 -7.69 -37.10 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -6.08 Total: 3.62 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -0.47 Total: -15.71 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: -0.18 Total: -36.91 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.46 Total: -9.23 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.41 -7.69 -37.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252919910.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.573 kcal (2) G-P(sol) polarization free energy of solvation -29.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds