Wall clock time and date at job start Mon Mar 30 2020 04:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46811 * 2 1 4 4 H 1.08994 * 109.46767 * 181.87128 * 3 2 1 5 5 C 1.50697 * 109.47097 * 61.86365 * 3 2 1 6 6 H 1.07997 * 120.00028 * 239.99649 * 5 3 2 7 7 C 1.37882 * 119.99985 * 60.00672 * 5 3 2 8 8 N 1.31517 * 119.99771 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00070 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47388 * 89.99683 * 9 7 5 11 11 H 1.48507 * 109.46997 * 209.99544 * 9 7 5 12 12 H 1.48507 * 109.47015 * 329.99408 * 9 7 5 13 13 N 1.46899 * 109.46700 * 301.86496 * 3 2 1 14 14 C 1.46903 * 110.99707 * 177.66257 * 13 3 2 15 15 C 1.46900 * 111.00478 * 301.61498 * 13 3 2 16 16 H 1.09009 * 109.46573 * 52.88205 * 15 13 3 17 17 C 1.52994 * 109.47130 * 292.88072 * 15 13 3 18 18 C 1.53008 * 109.46963 * 179.97438 * 17 15 13 19 19 C 1.53000 * 109.47226 * 59.99740 * 18 17 15 20 20 C 1.53001 * 109.46933 * 299.99836 * 19 18 17 21 21 C 1.52998 * 109.47478 * 172.87343 * 15 13 3 22 22 H 1.08998 * 109.46624 * 60.00058 * 21 15 13 23 23 O 1.42903 * 109.47430 * 300.00711 * 21 15 13 24 24 H 1.08998 * 109.47221 * 174.94202 * 1 2 3 25 25 H 1.08998 * 109.47345 * 54.94159 * 1 2 3 26 26 H 1.09002 * 109.47022 * 294.94132 * 1 2 3 27 27 H 1.08995 * 109.46898 * 119.99629 * 2 1 3 28 28 H 1.08992 * 109.47038 * 240.00213 * 2 1 3 29 29 H 0.96999 * 119.99813 * 180.02562 * 8 7 5 30 30 H 1.09005 * 109.47145 * 60.00425 * 14 13 3 31 31 H 1.09001 * 109.47452 * 179.97438 * 14 13 3 32 32 H 1.08998 * 109.47620 * 300.00178 * 14 13 3 33 33 H 1.09000 * 109.46962 * 299.99319 * 17 15 13 34 34 H 1.08993 * 109.47357 * 59.99651 * 17 15 13 35 35 H 1.09001 * 109.46955 * 179.97438 * 18 17 15 36 36 H 1.09000 * 109.46866 * 299.99549 * 18 17 15 37 37 H 1.08998 * 109.46994 * 59.99712 * 19 18 17 38 38 H 1.08998 * 109.47163 * 180.02562 * 19 18 17 39 39 H 1.09000 * 109.47283 * 179.97438 * 20 19 18 40 40 H 1.08999 * 109.47827 * 300.00149 * 20 19 18 41 41 H 0.96695 * 114.00011 * 179.97438 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1294 1.4428 -0.0336 5 6 1.5757 2.1395 1.2529 6 1 0.9522 3.0185 1.1824 7 6 1.9471 1.6550 2.4892 8 7 2.7061 0.5844 2.5750 9 14 1.3722 2.5193 4.0422 10 1 0.0769 1.9402 4.4804 11 1 2.3839 2.3364 5.1139 12 1 1.1989 3.9683 3.7671 13 7 1.5137 2.1479 -1.1763 14 6 1.9383 3.5542 -1.1804 15 6 1.9151 1.4732 -2.4179 16 1 1.6384 0.4202 -2.3650 17 6 3.4297 1.5941 -2.5974 18 6 3.8478 0.8909 -3.8903 19 6 3.1396 1.5446 -5.0786 20 6 1.6250 1.4236 -4.8990 21 6 1.2069 2.1274 -3.6059 22 1 1.4835 3.1804 -3.6587 23 8 -0.2078 2.0145 -3.4382 24 1 -0.3633 -1.0236 -0.0906 25 1 -0.3634 0.5903 -0.8412 26 1 -0.3633 0.4334 0.9318 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 2.9671 0.2434 3.4447 30 1 3.0270 3.6050 -1.2005 31 1 1.5354 4.0528 -2.0620 32 1 1.5681 4.0482 -0.2821 33 1 3.7063 2.6471 -2.6503 34 1 3.9342 1.1280 -1.7511 35 1 4.9268 0.9774 -4.0184 36 1 3.5712 -0.1621 -3.8370 37 1 3.4161 2.5976 -5.1318 38 1 3.4371 1.0434 -5.9996 39 1 1.1203 1.8898 -5.7453 40 1 1.3483 0.3707 -4.8456 41 1 -0.7217 2.4091 -4.1560 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252919910.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:06 Heat of formation + Delta-G solvation = -77.738952 kcal Electronic energy + Delta-G solvation = -19261.405118 eV Core-core repulsion = 16560.927279 eV Total energy + Delta-G solvation = -2700.477840 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.78005 -37.84705 -36.24721 -34.70621 -32.86130 -30.82735 -29.96532 -28.05449 -26.71062 -24.69166 -23.41773 -22.60231 -21.05452 -20.03665 -18.15479 -17.95128 -17.07393 -16.53776 -15.96214 -15.63541 -15.32832 -14.90112 -14.66592 -14.23788 -14.11091 -13.88624 -13.56664 -13.50045 -12.89725 -12.85625 -12.80142 -12.54893 -12.47688 -12.20178 -12.07610 -11.95210 -11.63366 -11.55187 -11.53111 -11.24876 -10.80917 -10.72590 -10.58696 -10.38531 -8.65425 -8.05951 -6.15217 1.40853 1.42392 1.51540 2.44086 3.21482 3.34622 3.45926 3.84795 4.02980 4.15647 4.26084 4.31522 4.41716 4.46419 4.56385 4.62838 4.71109 4.78417 4.80214 4.87134 4.91613 4.98052 5.14508 5.18734 5.20817 5.21722 5.28561 5.31259 5.33004 5.51363 5.52464 5.55750 5.77045 5.81312 5.92693 6.35770 6.51575 6.86563 6.99672 7.15860 7.52208 8.99417 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.033672 B = 0.007290 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.348292 B = 3840.129400 C = 3949.252422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.104 4.104 3 C 0.225 3.775 4 H -0.036 1.036 5 C -0.504 4.504 6 H 0.054 0.946 7 C 0.012 3.988 8 N -0.920 5.920 9 Si 0.951 3.049 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.270 1.270 13 N -0.525 5.525 14 C 0.040 3.960 15 C 0.087 3.913 16 H 0.064 0.936 17 C -0.146 4.146 18 C -0.114 4.114 19 C -0.110 4.110 20 C -0.144 4.144 21 C 0.120 3.880 22 H 0.054 0.946 23 O -0.569 6.569 24 H 0.033 0.967 25 H 0.055 0.945 26 H 0.029 0.971 27 H 0.060 0.940 28 H 0.022 0.978 29 H 0.259 0.741 30 H 0.010 0.990 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.061 0.939 41 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.489 2.666 -15.469 15.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.142 4.142 3 C 0.118 3.882 4 H -0.019 1.019 5 C -0.543 4.543 6 H 0.072 0.928 7 C -0.186 4.186 8 N -0.561 5.561 9 Si 0.778 3.222 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.194 1.194 13 N -0.247 5.247 14 C -0.109 4.109 15 C -0.022 4.022 16 H 0.082 0.918 17 C -0.185 4.185 18 C -0.152 4.152 19 C -0.147 4.147 20 C -0.182 4.182 21 C 0.061 3.939 22 H 0.072 0.928 23 O -0.376 6.376 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -0.749 2.252 -14.737 14.927 hybrid contribution 0.723 0.446 0.892 1.232 sum -0.026 2.698 -13.845 14.106 Atomic orbital electron populations 1.21303 0.96022 0.98336 1.00800 1.21415 0.96173 0.97917 0.98728 1.18998 0.90335 0.91314 0.87551 1.01872 1.21337 1.30288 1.11645 0.90992 0.92819 1.25616 0.95469 0.95783 1.01698 1.70016 1.37579 1.23819 1.24647 0.85655 0.77876 0.79134 0.79566 1.20420 1.21080 1.19423 1.62180 1.59160 1.01820 1.01544 1.22203 0.96750 0.90604 1.01319 1.21732 0.92043 0.98583 0.89837 0.91807 1.22107 0.96898 1.01081 0.98445 1.21508 1.00569 0.99401 0.93695 1.21468 0.93904 1.01439 0.97908 1.22246 0.97225 1.01521 0.97187 1.21784 0.81063 0.97803 0.93293 0.92770 1.86683 1.17304 1.82906 1.50683 0.94838 0.92577 0.95168 0.92155 0.95992 0.93207 0.97197 0.91140 0.92973 0.91726 0.94364 0.90997 0.92465 0.91282 0.89710 0.89242 0.92017 0.76854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.06 9.50 71.98 0.68 -4.38 16 2 C -0.10 -5.28 5.05 30.60 0.15 -5.12 16 3 C 0.22 11.67 1.47 44.17 0.07 11.73 16 4 H -0.04 -2.09 6.58 -2.39 -0.02 -2.10 16 5 C -0.50 -28.25 6.85 25.60 0.18 -28.07 16 6 H 0.05 3.04 6.51 -2.91 -0.02 3.02 16 7 C 0.01 0.70 5.30 84.66 0.45 1.15 16 8 N -0.92 -54.10 11.31 21.45 0.24 -53.86 16 9 Si 0.95 44.91 29.54 68.60 2.03 46.93 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 13 N -0.52 -22.93 3.53 -876.19 -3.09 -26.02 16 14 C 0.04 1.58 8.43 127.69 1.08 2.66 16 15 C 0.09 3.17 1.65 44.91 0.07 3.25 16 16 H 0.06 2.60 5.94 -2.38 -0.01 2.58 16 17 C -0.15 -4.87 4.49 30.60 0.14 -4.74 16 18 C -0.11 -2.84 5.92 30.60 0.18 -2.66 16 19 C -0.11 -2.13 5.92 30.59 0.18 -1.95 16 20 C -0.14 -3.02 5.55 30.61 0.17 -2.85 16 21 C 0.12 3.38 2.66 30.61 0.08 3.46 16 22 H 0.05 1.47 6.39 -2.39 -0.02 1.45 16 23 O -0.57 -17.04 13.18 -148.98 -1.96 -19.00 16 24 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.06 2.62 7.39 -2.39 -0.02 2.61 16 26 H 0.03 1.51 7.46 -2.39 -0.02 1.50 16 27 H 0.06 3.42 6.02 -2.39 -0.01 3.41 16 28 H 0.02 1.03 6.33 -2.39 -0.02 1.02 16 29 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 30 H 0.01 0.39 6.48 -2.38 -0.02 0.37 16 31 H 0.07 2.37 6.19 -2.39 -0.01 2.36 16 32 H 0.05 2.28 6.33 -2.39 -0.02 2.26 16 33 H 0.06 2.09 6.44 -2.39 -0.02 2.07 16 34 H 0.04 1.53 6.62 -2.39 -0.02 1.51 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.38 7.29 9.08 -74.06 -0.67 6.62 16 Total: -1.00 -64.69 300.73 0.98 -63.71 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.34 Total: 15.76 kcal Atomic # 6 Polarization: -30.95 SS G_CDS: 3.43 Total: -27.52 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: -2.85 Total: -79.88 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -1.96 Total: -19.00 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -64.69 0.98 -63.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252919910.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.033 kcal (2) G-P(sol) polarization free energy of solvation -64.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds