Wall clock time and date at job start Mon Mar 30 2020 04:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47263 * 2 1 4 4 H 1.08997 * 109.47420 * 303.10540 * 3 2 1 5 5 C 1.50701 * 109.47226 * 183.09914 * 3 2 1 6 6 H 1.07989 * 120.00068 * 239.99712 * 5 3 2 7 7 C 1.37882 * 119.99546 * 60.00583 * 5 3 2 8 8 N 1.31513 * 120.00178 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 119.99721 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47346 * 89.99629 * 9 7 5 11 11 H 1.48495 * 109.47366 * 209.99614 * 9 7 5 12 12 H 1.48502 * 109.47438 * 329.99952 * 9 7 5 13 13 N 1.46903 * 109.46700 * 63.10276 * 3 2 1 14 14 C 1.46903 * 111.00154 * 61.56416 * 13 3 2 15 15 C 1.46906 * 110.99814 * 185.51702 * 13 3 2 16 16 H 1.09001 * 109.46958 * 287.86942 * 15 13 3 17 17 C 1.52998 * 109.47364 * 47.86516 * 15 13 3 18 18 C 1.52999 * 109.47540 * 180.02562 * 17 15 13 19 19 C 1.53003 * 109.46593 * 300.00186 * 18 17 15 20 20 C 1.53000 * 109.47177 * 60.00043 * 19 18 17 21 21 C 1.52991 * 109.47147 * 167.86915 * 15 13 3 22 22 H 1.09001 * 109.47214 * 299.99871 * 21 15 13 23 23 O 1.42895 * 109.47465 * 59.99685 * 21 15 13 24 24 H 1.08993 * 109.47535 * 64.60797 * 1 2 3 25 25 H 1.09005 * 109.47081 * 184.61601 * 1 2 3 26 26 H 1.08999 * 109.46978 * 304.60285 * 1 2 3 27 27 H 1.09006 * 109.46681 * 240.00179 * 2 1 3 28 28 H 1.08999 * 109.47553 * 120.00346 * 2 1 3 29 29 H 0.97000 * 120.00200 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.47006 * 193.80614 * 14 13 3 31 31 H 1.08997 * 109.46927 * 313.80602 * 14 13 3 32 32 H 1.08994 * 109.47069 * 73.80299 * 14 13 3 33 33 H 1.09001 * 109.47061 * 59.99852 * 17 15 13 34 34 H 1.09007 * 109.47179 * 300.00521 * 17 15 13 35 35 H 1.09001 * 109.47309 * 59.99704 * 18 17 15 36 36 H 1.08997 * 109.47308 * 180.02562 * 18 17 15 37 37 H 1.09000 * 109.46559 * 179.97438 * 19 18 17 38 38 H 1.09001 * 109.47419 * 299.99850 * 19 18 17 39 39 H 1.09001 * 109.47430 * 60.00051 * 20 19 18 40 40 H 1.09001 * 109.46723 * 180.02562 * 20 19 18 41 41 H 0.96706 * 114.00460 * 179.97438 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6320 1.9722 -0.8608 5 6 3.5451 1.4431 -0.0768 6 1 4.1258 1.8964 0.7128 7 6 4.1805 0.8652 -1.1554 8 7 3.4732 0.3130 -2.1169 9 14 6.0460 0.8667 -1.2510 10 1 6.5761 -0.3577 -0.5990 11 1 6.4687 0.8920 -2.6743 12 1 6.5764 2.0668 -0.5557 13 7 1.6125 2.1129 1.2352 14 6 2.1752 1.4470 2.4176 15 6 1.9715 3.5372 1.2125 16 1 3.0497 3.6421 1.3334 17 6 1.5465 4.1491 -0.1239 18 6 1.9210 5.6324 -0.1479 19 6 1.2070 6.3570 0.9950 20 6 1.6322 5.7452 2.3313 21 6 1.2573 4.2615 2.3552 22 1 0.1791 4.1567 2.2342 23 8 1.6543 3.6901 3.6033 24 1 -0.3634 0.4406 -0.9283 25 1 -0.3633 -1.0244 0.0827 26 1 -0.3633 0.5836 0.8459 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.9202 -0.0932 -2.8758 30 1 1.6599 1.7977 3.3117 31 1 2.0461 0.3688 2.3231 32 1 3.2370 1.6803 2.4950 33 1 0.4683 4.0442 -0.2449 34 1 2.0554 3.6330 -0.9381 35 1 2.9992 5.7369 -0.0270 36 1 1.6177 6.0683 -1.0997 37 1 1.4742 7.4137 0.9782 38 1 0.1288 6.2525 0.8742 39 1 2.7104 5.8497 2.4522 40 1 1.1232 6.2612 3.1454 41 1 1.2396 4.1016 4.3740 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252919911.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:10 Heat of formation + Delta-G solvation = -59.574061 kcal Electronic energy + Delta-G solvation = -19288.135262 eV Core-core repulsion = 16588.445111 eV Total energy + Delta-G solvation = -2699.690151 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.12929 -36.27102 -35.11808 -32.54153 -31.15811 -29.56850 -28.29469 -26.73440 -24.20600 -22.87792 -22.02469 -20.85687 -19.46845 -18.61830 -16.84299 -16.17891 -15.46943 -14.85597 -14.39275 -14.09874 -13.55855 -13.36690 -13.13256 -12.86100 -12.46794 -12.20346 -11.99762 -11.71514 -11.23686 -11.21610 -11.04089 -10.93367 -10.80696 -10.55812 -10.41410 -10.29970 -10.11918 -9.85592 -9.60865 -9.56701 -9.39800 -9.07166 -8.82670 -8.26180 -6.96551 -5.91376 -4.04354 3.29798 3.36954 3.40470 4.44826 4.59701 4.90401 5.05600 5.28921 5.33137 5.42707 5.59114 5.70277 5.87137 5.88611 5.95922 6.01022 6.25445 6.36528 6.39836 6.45807 6.52964 6.54234 6.55740 6.64457 6.76649 6.92149 6.99070 7.04278 7.14570 7.22327 7.31223 7.47289 7.72241 7.85257 8.03563 8.12533 8.29113 8.46601 8.60970 9.07644 9.62808 11.06696 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020985 B = 0.009206 C = 0.008057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.968297 B = 3040.808290 C = 3474.348866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.114 4.114 3 C 0.206 3.794 4 H 0.045 0.955 5 C -0.536 4.536 6 H 0.054 0.946 7 C 0.067 3.933 8 N -0.887 5.887 9 Si 0.883 3.117 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.532 5.532 14 C 0.037 3.963 15 C 0.108 3.892 16 H 0.043 0.957 17 C -0.113 4.113 18 C -0.120 4.120 19 C -0.114 4.114 20 C -0.149 4.149 21 C 0.112 3.888 22 H 0.054 0.946 23 O -0.553 6.553 24 H 0.037 0.963 25 H 0.023 0.977 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.033 0.967 29 H 0.260 0.740 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.016 0.984 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.273 8.654 6.436 12.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.152 4.152 3 C 0.100 3.900 4 H 0.063 0.937 5 C -0.575 4.575 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.526 5.526 9 Si 0.711 3.289 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.256 5.256 14 C -0.111 4.111 15 C -0.001 4.001 16 H 0.061 0.939 17 C -0.150 4.150 18 C -0.158 4.158 19 C -0.152 4.152 20 C -0.187 4.187 21 C 0.053 3.947 22 H 0.072 0.928 23 O -0.358 6.358 24 H 0.056 0.944 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.109 0.891 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.034 0.966 33 H 0.078 0.922 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -5.408 8.132 5.874 11.396 hybrid contribution 1.761 0.375 0.178 1.809 sum -3.647 8.507 6.052 11.059 Atomic orbital electron populations 1.21717 0.98992 0.98384 1.00511 1.21651 0.92137 0.99494 1.01904 1.19408 0.92593 0.90914 0.87079 0.93705 1.21772 0.92939 1.36985 1.05798 0.92813 1.24895 0.97619 0.95229 0.95701 1.69874 1.34729 1.38166 1.09824 0.86737 0.86698 0.78359 0.77063 1.20803 1.21283 1.20145 1.62466 1.58270 1.00375 1.04462 1.22345 0.97210 0.98175 0.93378 1.21272 0.97255 0.89867 0.91752 0.93859 1.21654 1.01293 0.93889 0.98214 1.21576 1.00377 0.96276 0.97574 1.21479 1.00332 0.98735 0.94668 1.22267 1.01985 0.96887 0.97572 1.22005 0.97975 0.90377 0.84370 0.92817 1.86784 1.72189 1.61294 1.15500 0.94426 0.95765 0.93130 0.89146 0.94787 0.93043 0.91419 0.92984 0.96570 0.92211 0.89194 0.92121 0.92208 0.92493 0.92116 0.91551 0.92501 0.79635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.84 37.16 0.37 -2.53 16 2 C -0.11 -2.75 5.05 -26.73 -0.13 -2.88 16 3 C 0.21 5.07 1.26 -68.86 -0.09 4.99 16 4 H 0.05 1.19 5.84 -51.93 -0.30 0.89 16 5 C -0.54 -14.45 7.17 -34.44 -0.25 -14.70 16 6 H 0.05 1.50 5.94 -52.49 -0.31 1.19 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 8 N -0.89 -24.96 11.30 55.43 0.63 -24.34 16 9 Si 0.88 21.48 29.54 -169.99 -5.02 16.46 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.53 -11.53 3.90 -228.30 -0.89 -12.42 16 14 C 0.04 0.79 8.05 60.07 0.48 1.28 16 15 C 0.11 2.11 1.41 -67.72 -0.10 2.02 16 16 H 0.04 0.98 7.05 -51.93 -0.37 0.61 16 17 C -0.11 -2.07 4.54 -26.73 -0.12 -2.19 16 18 C -0.12 -1.80 5.92 -26.73 -0.16 -1.95 16 19 C -0.11 -1.45 5.92 -26.73 -0.16 -1.61 16 20 C -0.15 -1.96 5.55 -26.71 -0.15 -2.11 16 21 C 0.11 1.77 3.10 -26.71 -0.08 1.69 16 22 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 23 O -0.55 -8.60 9.84 -35.23 -0.35 -8.94 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 1.03 7.56 -51.93 -0.39 0.63 16 27 H 0.09 2.43 5.99 -51.93 -0.31 2.12 16 28 H 0.03 0.82 6.03 -51.93 -0.31 0.51 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.07 1.33 5.59 -51.93 -0.29 1.04 16 31 H 0.05 1.14 5.71 -51.93 -0.30 0.84 16 32 H 0.02 0.37 6.73 -51.93 -0.35 0.02 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.09 1.95 6.08 -51.93 -0.32 1.63 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.36 3.82 9.08 45.56 0.41 4.24 16 LS Contribution 300.34 15.07 4.53 4.53 Total: -1.00 -28.47 300.34 -7.78 -36.25 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -6.20 Total: 4.71 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -0.48 Total: -16.25 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: -0.26 Total: -36.75 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -0.35 Total: -8.94 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.47 -7.78 -36.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252919911.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.321 kcal (2) G-P(sol) polarization free energy of solvation -28.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds