Wall clock time and date at job start Mon Mar 30 2020 04:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47263 * 2 1 4 4 H 1.08997 * 109.47420 * 303.10540 * 3 2 1 5 5 C 1.50701 * 109.47226 * 183.09914 * 3 2 1 6 6 H 1.07989 * 120.00068 * 239.99712 * 5 3 2 7 7 C 1.37882 * 119.99546 * 60.00583 * 5 3 2 8 8 N 1.31513 * 120.00178 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 119.99721 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47346 * 89.99629 * 9 7 5 11 11 H 1.48495 * 109.47366 * 209.99614 * 9 7 5 12 12 H 1.48502 * 109.47438 * 329.99952 * 9 7 5 13 13 N 1.46903 * 109.46700 * 63.10276 * 3 2 1 14 14 C 1.46903 * 111.00154 * 61.56416 * 13 3 2 15 15 C 1.46906 * 110.99814 * 185.51702 * 13 3 2 16 16 H 1.09001 * 109.46958 * 287.86942 * 15 13 3 17 17 C 1.52998 * 109.47364 * 47.86516 * 15 13 3 18 18 C 1.52999 * 109.47540 * 180.02562 * 17 15 13 19 19 C 1.53003 * 109.46593 * 300.00186 * 18 17 15 20 20 C 1.53000 * 109.47177 * 60.00043 * 19 18 17 21 21 C 1.52991 * 109.47147 * 167.86915 * 15 13 3 22 22 H 1.09001 * 109.47214 * 299.99871 * 21 15 13 23 23 O 1.42895 * 109.47465 * 59.99685 * 21 15 13 24 24 H 1.08993 * 109.47535 * 64.60797 * 1 2 3 25 25 H 1.09005 * 109.47081 * 184.61601 * 1 2 3 26 26 H 1.08999 * 109.46978 * 304.60285 * 1 2 3 27 27 H 1.09006 * 109.46681 * 240.00179 * 2 1 3 28 28 H 1.08999 * 109.47553 * 120.00346 * 2 1 3 29 29 H 0.97000 * 120.00200 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.47006 * 193.80614 * 14 13 3 31 31 H 1.08997 * 109.46927 * 313.80602 * 14 13 3 32 32 H 1.08994 * 109.47069 * 73.80299 * 14 13 3 33 33 H 1.09001 * 109.47061 * 59.99852 * 17 15 13 34 34 H 1.09007 * 109.47179 * 300.00521 * 17 15 13 35 35 H 1.09001 * 109.47309 * 59.99704 * 18 17 15 36 36 H 1.08997 * 109.47308 * 180.02562 * 18 17 15 37 37 H 1.09000 * 109.46559 * 179.97438 * 19 18 17 38 38 H 1.09001 * 109.47419 * 299.99850 * 19 18 17 39 39 H 1.09001 * 109.47430 * 60.00051 * 20 19 18 40 40 H 1.09001 * 109.46723 * 180.02562 * 20 19 18 41 41 H 0.96706 * 114.00460 * 179.97438 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6320 1.9722 -0.8608 5 6 3.5451 1.4431 -0.0768 6 1 4.1258 1.8964 0.7128 7 6 4.1805 0.8652 -1.1554 8 7 3.4732 0.3130 -2.1169 9 14 6.0460 0.8667 -1.2510 10 1 6.5761 -0.3577 -0.5990 11 1 6.4687 0.8920 -2.6743 12 1 6.5764 2.0668 -0.5557 13 7 1.6125 2.1129 1.2352 14 6 2.1752 1.4470 2.4176 15 6 1.9715 3.5372 1.2125 16 1 3.0497 3.6421 1.3334 17 6 1.5465 4.1491 -0.1239 18 6 1.9210 5.6324 -0.1479 19 6 1.2070 6.3570 0.9950 20 6 1.6322 5.7452 2.3313 21 6 1.2573 4.2615 2.3552 22 1 0.1791 4.1567 2.2342 23 8 1.6543 3.6901 3.6033 24 1 -0.3634 0.4406 -0.9283 25 1 -0.3633 -1.0244 0.0827 26 1 -0.3633 0.5836 0.8459 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.9202 -0.0932 -2.8758 30 1 1.6599 1.7977 3.3117 31 1 2.0461 0.3688 2.3231 32 1 3.2370 1.6803 2.4950 33 1 0.4683 4.0442 -0.2449 34 1 2.0554 3.6330 -0.9381 35 1 2.9992 5.7369 -0.0270 36 1 1.6177 6.0683 -1.0997 37 1 1.4742 7.4137 0.9782 38 1 0.1288 6.2525 0.8742 39 1 2.7104 5.8497 2.4522 40 1 1.1232 6.2612 3.1454 41 1 1.2396 4.1016 4.3740 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252919911.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:10 Heat of formation + Delta-G solvation = -78.624341 kcal Electronic energy + Delta-G solvation = -19288.961344 eV Core-core repulsion = 16588.445111 eV Total energy + Delta-G solvation = -2700.516233 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.58321 -37.91728 -36.35823 -34.50725 -32.99558 -30.88487 -29.71625 -28.69446 -26.05576 -24.59815 -23.39904 -22.27069 -20.86150 -20.49078 -18.27474 -18.02528 -17.16683 -16.51778 -16.06690 -15.55120 -15.01151 -14.78930 -14.66596 -14.59185 -14.02989 -13.75125 -13.53996 -13.32460 -13.09214 -12.87694 -12.68097 -12.66029 -12.36930 -12.20532 -12.05974 -11.79745 -11.59955 -11.56081 -11.39201 -11.19250 -11.06145 -10.75894 -10.39603 -10.33216 -8.86338 -8.00543 -6.22582 1.32358 1.34648 1.43061 2.38945 3.15568 3.36248 3.50566 3.89170 4.13097 4.14904 4.35036 4.45524 4.53076 4.56414 4.57826 4.62806 4.77251 4.85868 4.91807 4.95360 5.08080 5.10311 5.20040 5.25080 5.25592 5.28872 5.33938 5.45201 5.46826 5.51304 5.56826 5.57622 5.68182 5.85895 6.11169 6.28545 6.46266 6.76725 7.00355 7.09461 7.47360 8.92684 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020985 B = 0.009206 C = 0.008057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.968297 B = 3040.808290 C = 3474.348866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.111 4.111 3 C 0.213 3.787 4 H 0.023 0.977 5 C -0.543 4.543 6 H 0.036 0.964 7 C 0.024 3.976 8 N -0.908 5.908 9 Si 0.938 3.062 10 H -0.279 1.279 11 H -0.279 1.279 12 H -0.278 1.278 13 N -0.527 5.527 14 C 0.048 3.952 15 C 0.105 3.895 16 H 0.004 0.996 17 C -0.107 4.107 18 C -0.117 4.117 19 C -0.109 4.109 20 C -0.142 4.142 21 C 0.120 3.880 22 H 0.063 0.937 23 O -0.572 6.572 24 H 0.035 0.965 25 H 0.044 0.956 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.027 0.973 29 H 0.261 0.739 30 H 0.092 0.908 31 H 0.043 0.957 32 H -0.011 1.011 33 H 0.066 0.934 34 H 0.045 0.955 35 H 0.046 0.954 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.092 0.908 41 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.384 10.171 7.644 14.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.149 4.149 3 C 0.106 3.894 4 H 0.041 0.959 5 C -0.582 4.582 6 H 0.054 0.946 7 C -0.176 4.176 8 N -0.548 5.548 9 Si 0.765 3.235 10 H -0.205 1.205 11 H -0.205 1.205 12 H -0.203 1.203 13 N -0.250 5.250 14 C -0.100 4.100 15 C -0.005 4.005 16 H 0.022 0.978 17 C -0.144 4.144 18 C -0.155 4.155 19 C -0.146 4.146 20 C -0.180 4.180 21 C 0.061 3.939 22 H 0.081 0.919 23 O -0.381 6.381 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.008 0.992 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.110 0.890 41 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -6.526 9.662 7.103 13.653 hybrid contribution 2.111 -0.096 -0.168 2.120 sum -4.416 9.566 6.935 12.614 Atomic orbital electron populations 1.21564 0.96121 0.99890 1.00692 1.21521 0.94675 0.98658 1.00076 1.19189 0.91106 0.91253 0.87824 0.95925 1.21915 0.94392 1.36614 1.05297 0.94609 1.25517 1.01333 0.95165 0.95563 1.69980 1.36006 1.38646 1.10128 0.85876 0.82307 0.78126 0.77240 1.20455 1.20473 1.20343 1.62491 1.57660 1.01537 1.03272 1.22296 0.95806 0.97703 0.94197 1.21394 0.95569 0.89020 0.94488 0.97775 1.21533 1.00946 0.95939 0.96025 1.21556 0.99979 0.94080 0.99897 1.21469 1.00715 0.99601 0.92828 1.22218 1.01561 0.94994 0.99231 1.21812 0.97513 0.91441 0.83128 0.91949 1.86669 1.72833 1.62219 1.16338 0.94609 0.93668 0.92373 0.92034 0.95435 0.92991 0.89031 0.93840 0.99223 0.91551 0.93609 0.93483 0.90746 0.89944 0.90719 0.92913 0.88975 0.76697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.13 9.84 71.98 0.71 -4.42 16 2 C -0.11 -5.47 5.05 30.59 0.15 -5.32 16 3 C 0.21 10.85 1.26 44.17 0.06 10.91 16 4 H 0.02 1.27 5.84 -2.39 -0.01 1.25 16 5 C -0.54 -30.49 7.17 25.60 0.18 -30.31 16 6 H 0.04 2.10 5.94 -2.92 -0.02 2.08 16 7 C 0.02 1.35 5.30 84.66 0.45 1.80 16 8 N -0.91 -52.53 11.30 21.45 0.24 -52.28 16 9 Si 0.94 45.13 29.54 68.60 2.03 47.15 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 12 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 13 N -0.53 -23.10 3.90 -876.21 -3.42 -26.52 16 14 C 0.05 2.08 8.05 127.69 1.03 3.11 16 15 C 0.10 4.14 1.41 44.91 0.06 4.20 16 16 H 0.00 0.20 7.05 -2.39 -0.02 0.18 16 17 C -0.11 -3.97 4.54 30.59 0.14 -3.83 16 18 C -0.12 -3.39 5.92 30.59 0.18 -3.21 16 19 C -0.11 -2.38 5.92 30.60 0.18 -2.20 16 20 C -0.14 -3.30 5.55 30.61 0.17 -3.13 16 21 C 0.12 3.56 3.10 30.61 0.09 3.65 16 22 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 23 O -0.57 -16.49 9.84 -148.98 -1.47 -17.96 16 24 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 26 H 0.06 2.28 7.56 -2.39 -0.02 2.26 16 27 H 0.06 3.40 5.99 -2.38 -0.01 3.39 16 28 H 0.03 1.36 6.03 -2.39 -0.01 1.34 16 29 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 30 H 0.09 3.51 5.59 -2.39 -0.01 3.49 16 31 H 0.04 1.92 5.71 -2.39 -0.01 1.90 16 32 H -0.01 -0.53 6.73 -2.39 -0.02 -0.55 16 33 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.05 2.09 6.08 -2.38 -0.01 2.07 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.38 6.84 9.08 -74.05 -0.67 6.16 16 Total: -1.00 -63.44 300.34 1.12 -62.32 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.33 Total: 16.04 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: 3.41 Total: -28.75 kcal Atomic # 7 Polarization: -75.63 SS G_CDS: -3.18 Total: -78.80 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -1.47 Total: -17.96 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -63.44 1.12 -62.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252919911.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.305 kcal (2) G-P(sol) polarization free energy of solvation -63.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds