Wall clock time and date at job start Mon Mar 30 2020 04:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.46951 * 2 1 4 4 H 1.08999 * 109.47191 * 301.26742 * 3 2 1 5 5 C 1.50710 * 109.46794 * 181.27125 * 3 2 1 6 6 H 1.08001 * 119.99998 * 245.24000 * 5 3 2 7 7 C 1.37875 * 119.99786 * 65.24712 * 5 3 2 8 8 N 1.31519 * 120.00539 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99962 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47051 * 59.99565 * 9 7 5 11 11 H 1.48491 * 109.47342 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46574 * 299.99931 * 9 7 5 13 13 N 1.46898 * 109.47512 * 61.27265 * 3 2 1 14 14 C 1.47625 * 110.99934 * 217.79659 * 13 3 2 15 15 C 1.50821 * 108.04139 * 150.32202 * 14 13 3 16 16 C 1.53815 * 111.62114 * 95.06331 * 15 14 13 17 17 C 1.54177 * 111.96847 * 319.04506 * 16 15 14 18 18 C 1.50752 * 112.61007 * 318.48525 * 17 16 15 19 19 C 1.39776 * 111.00082 * 88.89236 * 13 3 2 20 20 H 1.09007 * 109.01922 * 68.62667 * 19 13 3 21 21 C 1.52999 * 109.02467 * 309.72880 * 19 13 3 22 22 O 1.42899 * 109.46823 * 295.74024 * 21 19 13 23 23 H 1.09001 * 109.47092 * 184.96794 * 1 2 3 24 24 H 1.09003 * 109.47227 * 304.96575 * 1 2 3 25 25 H 1.08999 * 109.47134 * 64.96587 * 1 2 3 26 26 H 1.08999 * 109.47384 * 239.99701 * 2 1 3 27 27 H 1.09001 * 109.46963 * 119.99889 * 2 1 3 28 28 H 0.96993 * 120.00465 * 180.02562 * 8 7 5 29 29 H 1.08994 * 109.75052 * 269.95788 * 14 13 3 30 30 H 1.08998 * 109.74822 * 30.68473 * 14 13 3 31 31 H 1.09000 * 109.04828 * 215.61414 * 15 14 13 32 32 H 1.08999 * 109.04893 * 334.58213 * 15 14 13 33 33 H 1.09003 * 108.98358 * 79.68282 * 16 15 14 34 34 H 1.09001 * 108.98363 * 198.48985 * 16 15 14 35 35 H 1.08995 * 108.85683 * 79.29429 * 17 16 15 36 36 H 1.08997 * 108.85318 * 197.78096 * 17 16 15 37 37 H 1.08991 * 109.54909 * 333.14464 * 18 17 16 38 38 H 1.09009 * 109.54136 * 212.87664 * 18 17 16 39 39 H 1.09003 * 109.47188 * 175.74433 * 21 19 13 40 40 H 1.08995 * 109.47357 * 55.73757 * 21 19 13 41 41 H 0.96701 * 114.00390 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6582 1.9628 -0.8784 5 6 3.5467 1.4425 -0.0315 6 1 4.1044 1.8280 0.8092 7 6 4.2132 0.9507 -1.1337 8 7 3.5341 0.4809 -2.1574 9 14 6.0808 0.9514 -1.1731 10 1 6.6000 0.1355 -0.0462 11 1 6.5490 0.3740 -2.4586 12 1 6.5779 2.3449 -1.0456 13 7 1.5756 2.1261 1.2145 14 6 1.2168 3.5290 0.9275 15 6 0.1313 3.9399 1.8905 16 6 0.7090 4.6514 3.1258 17 6 1.9997 3.9751 3.6298 18 6 1.9139 2.4703 3.6033 19 6 2.4842 1.9568 2.2631 20 1 3.3978 2.5053 2.0335 21 6 2.8168 0.4697 2.3996 22 8 1.6396 -0.2493 2.7731 23 1 -0.3633 -1.0238 0.0890 24 1 -0.3634 0.5890 0.8422 25 1 -0.3633 0.4349 -0.9311 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 4.0029 0.1345 -2.9326 29 1 2.0898 4.1675 1.0624 30 1 0.8524 3.6139 -0.0963 31 1 -0.5589 4.6134 1.3824 32 1 -0.4119 3.0521 2.2142 33 1 0.9291 5.6873 2.8678 34 1 -0.0332 4.6350 3.9239 35 1 2.8319 4.2916 3.0011 36 1 2.1897 4.2976 4.6535 37 1 0.8726 2.1626 3.6982 38 1 2.4942 2.0574 4.4285 39 1 3.5816 0.3371 3.1649 40 1 3.1867 0.0911 1.4468 41 1 1.7766 -1.2008 2.8783 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253165830.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:36 Heat of formation + Delta-G solvation = -28.991074 kcal Electronic energy + Delta-G solvation = -19740.572877 eV Core-core repulsion = 17042.208904 eV Total energy + Delta-G solvation = -2698.363973 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.50867 -35.95403 -34.73791 -32.26633 -31.73814 -30.87479 -27.07287 -26.66121 -24.69607 -22.86476 -22.34144 -20.01196 -19.03268 -18.90708 -16.75807 -16.18960 -15.38647 -14.70803 -14.49372 -14.20645 -13.72009 -13.39427 -13.04403 -12.66537 -12.31772 -12.06425 -11.65772 -11.62222 -11.42249 -11.28380 -11.21628 -10.90511 -10.54651 -10.39905 -10.19475 -10.12646 -9.86268 -9.72652 -9.55076 -9.42268 -9.19664 -8.82934 -8.73052 -8.24607 -6.82760 -6.00968 -4.11085 3.24689 3.31012 3.33051 4.36486 4.99238 5.18201 5.25850 5.33397 5.35667 5.45943 5.74314 5.85744 5.95483 6.13732 6.17689 6.29422 6.33983 6.40493 6.50475 6.55183 6.58848 6.65433 6.68026 6.74581 6.77184 6.90271 6.98745 7.06983 7.16239 7.27991 7.39750 7.59969 7.76674 7.87169 8.12039 8.19959 8.42497 8.48227 8.81810 9.04037 9.53786 10.99256 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022731 B = 0.009816 C = 0.009079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.501805 B = 2851.734681 C = 3083.235250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.119 4.119 3 C 0.217 3.783 4 H 0.032 0.968 5 C -0.551 4.551 6 H 0.065 0.935 7 C 0.070 3.930 8 N -0.880 5.880 9 Si 0.883 3.117 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.537 5.537 14 C 0.073 3.927 15 C -0.116 4.116 16 C -0.112 4.112 17 C -0.119 4.119 18 C -0.110 4.110 19 C 0.128 3.872 20 H 0.040 0.960 21 C 0.055 3.945 22 O -0.556 6.556 23 H 0.019 0.981 24 H 0.056 0.944 25 H 0.025 0.975 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.261 0.739 29 H 0.029 0.971 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.047 0.953 37 H 0.072 0.928 38 H 0.050 0.950 39 H 0.014 0.986 40 H 0.110 0.890 41 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.161 2.601 8.216 9.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.157 4.157 3 C 0.112 3.888 4 H 0.050 0.950 5 C -0.590 4.590 6 H 0.083 0.917 7 C -0.134 4.134 8 N -0.518 5.518 9 Si 0.711 3.289 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.261 5.261 14 C -0.055 4.055 15 C -0.154 4.154 16 C -0.150 4.150 17 C -0.157 4.157 18 C -0.148 4.148 19 C 0.017 3.983 20 H 0.057 0.943 21 C -0.022 4.022 22 O -0.360 6.360 23 H 0.038 0.962 24 H 0.075 0.925 25 H 0.044 0.956 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.032 0.968 40 H 0.127 0.873 41 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -3.794 2.933 8.145 9.452 hybrid contribution 2.161 -0.088 -0.346 2.190 sum -1.633 2.845 7.799 8.460 Atomic orbital electron populations 1.21607 0.99074 0.98209 0.99904 1.21962 0.92595 0.99184 1.01920 1.19300 0.92191 0.91451 0.85893 0.95012 1.21873 0.92864 1.41621 1.02616 0.91730 1.24937 0.97757 0.95222 0.95467 1.69929 1.35174 1.40569 1.06117 0.86810 0.86458 0.78338 0.77337 1.20256 1.21265 1.20388 1.59139 1.46427 1.12273 1.08255 1.21638 0.96481 0.89675 0.97722 1.21467 0.98394 1.00074 0.95502 1.21875 0.96929 0.98499 0.97683 1.21424 0.97871 0.96731 0.99663 1.21481 1.02325 0.93801 0.97228 1.20228 0.93771 0.93780 0.90543 0.94267 1.23196 0.85538 0.92740 1.00700 1.86592 1.35567 1.21801 1.92001 0.96175 0.92534 0.95555 0.91364 0.91748 0.92865 0.95253 0.91879 0.93256 0.90776 0.93229 0.93109 0.92617 0.93460 0.90910 0.93090 0.96758 0.87268 0.79841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.84 37.16 0.37 -2.38 16 2 C -0.12 -2.74 4.69 -26.73 -0.13 -2.87 16 3 C 0.22 5.22 1.65 -68.86 -0.11 5.10 16 4 H 0.03 0.87 7.19 -51.93 -0.37 0.49 16 5 C -0.55 -14.06 5.96 -34.44 -0.21 -14.26 16 6 H 0.06 1.64 4.88 -52.49 -0.26 1.38 16 7 C 0.07 1.83 5.32 -17.82 -0.09 1.74 16 8 N -0.88 -24.30 11.71 55.43 0.65 -23.65 16 9 Si 0.88 20.51 29.54 -169.99 -5.02 15.49 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.54 -11.16 2.80 -225.10 -0.63 -11.79 16 14 C 0.07 1.39 5.35 -4.52 -0.02 1.36 16 15 C -0.12 -1.87 5.41 -27.40 -0.15 -2.02 16 16 C -0.11 -1.61 5.91 -25.69 -0.15 -1.77 16 17 C -0.12 -1.83 5.31 -27.24 -0.14 -1.97 16 18 C -0.11 -1.88 4.60 -27.11 -0.12 -2.01 16 19 C 0.13 2.53 1.32 -70.63 -0.09 2.44 16 20 H 0.04 0.86 5.45 -51.92 -0.28 0.58 16 21 C 0.06 1.08 5.03 37.16 0.19 1.26 16 22 O -0.56 -10.11 11.15 -35.23 -0.39 -10.50 16 23 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 1.19 7.49 -51.93 -0.39 0.80 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.07 1.78 6.47 -51.93 -0.34 1.44 16 27 H 0.06 1.43 3.32 -51.93 -0.17 1.25 16 28 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.03 0.58 6.66 -51.93 -0.35 0.23 16 30 H 0.06 1.25 7.28 -51.93 -0.38 0.88 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.29 7.26 -51.93 -0.38 0.91 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.91 6.58 -51.93 -0.34 0.57 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 1.32 7.10 -51.93 -0.37 0.95 16 38 H 0.05 0.83 8.02 -51.92 -0.42 0.41 16 39 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.11 2.45 3.51 -51.93 -0.18 2.26 16 41 H 0.36 5.09 9.06 45.56 0.41 5.51 16 LS Contribution 292.49 15.07 4.41 4.41 Total: -1.00 -26.97 292.49 -7.56 -34.53 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -5.90 Total: 6.88 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -0.67 Total: -15.37 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.02 Total: -35.44 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: -0.39 Total: -10.50 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -26.97 -7.56 -34.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253165830.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.543 kcal (2) G-P(sol) polarization free energy of solvation -26.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds