Wall clock time and date at job start Mon Mar 30 2020 04:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.46951 * 2 1 4 4 H 1.08999 * 109.47191 * 301.26742 * 3 2 1 5 5 C 1.50710 * 109.46794 * 181.27125 * 3 2 1 6 6 H 1.08001 * 119.99998 * 245.24000 * 5 3 2 7 7 C 1.37875 * 119.99786 * 65.24712 * 5 3 2 8 8 N 1.31519 * 120.00539 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99962 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47051 * 59.99565 * 9 7 5 11 11 H 1.48491 * 109.47342 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46574 * 299.99931 * 9 7 5 13 13 N 1.46898 * 109.47512 * 61.27265 * 3 2 1 14 14 C 1.47625 * 110.99934 * 217.79659 * 13 3 2 15 15 C 1.50821 * 108.04139 * 150.32202 * 14 13 3 16 16 C 1.53815 * 111.62114 * 95.06331 * 15 14 13 17 17 C 1.54177 * 111.96847 * 319.04506 * 16 15 14 18 18 C 1.50752 * 112.61007 * 318.48525 * 17 16 15 19 19 C 1.39776 * 111.00082 * 88.89236 * 13 3 2 20 20 H 1.09007 * 109.01922 * 68.62667 * 19 13 3 21 21 C 1.52999 * 109.02467 * 309.72880 * 19 13 3 22 22 O 1.42899 * 109.46823 * 295.74024 * 21 19 13 23 23 H 1.09001 * 109.47092 * 184.96794 * 1 2 3 24 24 H 1.09003 * 109.47227 * 304.96575 * 1 2 3 25 25 H 1.08999 * 109.47134 * 64.96587 * 1 2 3 26 26 H 1.08999 * 109.47384 * 239.99701 * 2 1 3 27 27 H 1.09001 * 109.46963 * 119.99889 * 2 1 3 28 28 H 0.96993 * 120.00465 * 180.02562 * 8 7 5 29 29 H 1.08994 * 109.75052 * 269.95788 * 14 13 3 30 30 H 1.08998 * 109.74822 * 30.68473 * 14 13 3 31 31 H 1.09000 * 109.04828 * 215.61414 * 15 14 13 32 32 H 1.08999 * 109.04893 * 334.58213 * 15 14 13 33 33 H 1.09003 * 108.98358 * 79.68282 * 16 15 14 34 34 H 1.09001 * 108.98363 * 198.48985 * 16 15 14 35 35 H 1.08995 * 108.85683 * 79.29429 * 17 16 15 36 36 H 1.08997 * 108.85318 * 197.78096 * 17 16 15 37 37 H 1.08991 * 109.54909 * 333.14464 * 18 17 16 38 38 H 1.09009 * 109.54136 * 212.87664 * 18 17 16 39 39 H 1.09003 * 109.47188 * 175.74433 * 21 19 13 40 40 H 1.08995 * 109.47357 * 55.73757 * 21 19 13 41 41 H 0.96701 * 114.00390 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6582 1.9628 -0.8784 5 6 3.5467 1.4425 -0.0315 6 1 4.1044 1.8280 0.8092 7 6 4.2132 0.9507 -1.1337 8 7 3.5341 0.4809 -2.1574 9 14 6.0808 0.9514 -1.1731 10 1 6.6000 0.1355 -0.0462 11 1 6.5490 0.3740 -2.4586 12 1 6.5779 2.3449 -1.0456 13 7 1.5756 2.1261 1.2145 14 6 1.2168 3.5290 0.9275 15 6 0.1313 3.9399 1.8905 16 6 0.7090 4.6514 3.1258 17 6 1.9997 3.9751 3.6298 18 6 1.9139 2.4703 3.6033 19 6 2.4842 1.9568 2.2631 20 1 3.3978 2.5053 2.0335 21 6 2.8168 0.4697 2.3996 22 8 1.6396 -0.2493 2.7731 23 1 -0.3633 -1.0238 0.0890 24 1 -0.3634 0.5890 0.8422 25 1 -0.3633 0.4349 -0.9311 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 4.0029 0.1345 -2.9326 29 1 2.0898 4.1675 1.0624 30 1 0.8524 3.6139 -0.0963 31 1 -0.5589 4.6134 1.3824 32 1 -0.4119 3.0521 2.2142 33 1 0.9291 5.6873 2.8678 34 1 -0.0332 4.6350 3.9239 35 1 2.8319 4.2916 3.0011 36 1 2.1897 4.2976 4.6535 37 1 0.8726 2.1626 3.6982 38 1 2.4942 2.0574 4.4285 39 1 3.5816 0.3371 3.1649 40 1 3.1867 0.0911 1.4468 41 1 1.7766 -1.2008 2.8783 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253165830.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:35 Heat of formation + Delta-G solvation = -46.017607 kcal Electronic energy + Delta-G solvation = -19741.311203 eV Core-core repulsion = 17042.208904 eV Total energy + Delta-G solvation = -2699.102299 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.11388 -37.39388 -36.37575 -34.09914 -33.24286 -32.57629 -28.87699 -28.14849 -26.28745 -24.66736 -23.79733 -21.74962 -20.78091 -20.23218 -18.46083 -17.85787 -17.07112 -16.44233 -16.09296 -15.55378 -15.27226 -15.04945 -14.61385 -14.29536 -13.89297 -13.73469 -13.36260 -13.18062 -13.07672 -12.86047 -12.78431 -12.66769 -12.33462 -11.97374 -11.71960 -11.64071 -11.47237 -11.24621 -11.10556 -11.06432 -10.88136 -10.63891 -10.39966 -10.16546 -8.60815 -7.99177 -6.18147 1.38565 1.40262 1.46466 2.41355 3.18430 3.42577 3.79067 4.05457 4.06642 4.15531 4.40233 4.43846 4.55420 4.67071 4.77277 4.83362 4.87453 4.93345 4.96208 5.01899 5.08143 5.11867 5.22837 5.30755 5.32714 5.37142 5.38798 5.53878 5.55542 5.61595 5.67536 5.73614 5.84829 5.99686 6.20863 6.27619 6.54145 6.98858 7.12876 7.25393 7.50202 8.96139 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022731 B = 0.009816 C = 0.009079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.501805 B = 2851.734681 C = 3083.235250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.112 4.112 3 C 0.224 3.776 4 H -0.010 1.010 5 C -0.549 4.549 6 H 0.065 0.935 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.940 3.060 10 H -0.268 1.268 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.531 5.531 14 C 0.071 3.929 15 C -0.108 4.108 16 C -0.108 4.108 17 C -0.119 4.119 18 C -0.098 4.098 19 C 0.122 3.878 20 H 0.017 0.983 21 C 0.062 3.938 22 O -0.561 6.561 23 H 0.039 0.961 24 H 0.057 0.943 25 H 0.015 0.985 26 H 0.035 0.965 27 H 0.077 0.923 28 H 0.259 0.741 29 H 0.022 0.978 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.040 0.960 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.032 0.968 40 H 0.078 0.922 41 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.339 3.059 10.423 11.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.150 4.150 3 C 0.117 3.883 4 H 0.008 0.992 5 C -0.588 4.588 6 H 0.083 0.917 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.766 3.234 10 H -0.193 1.193 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.255 5.255 14 C -0.057 4.057 15 C -0.146 4.146 16 C -0.146 4.146 17 C -0.157 4.157 18 C -0.136 4.136 19 C 0.011 3.989 20 H 0.034 0.966 21 C -0.015 4.015 22 O -0.367 6.367 23 H 0.058 0.942 24 H 0.076 0.924 25 H 0.035 0.965 26 H 0.053 0.947 27 H 0.095 0.905 28 H 0.068 0.932 29 H 0.040 0.960 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.050 0.950 40 H 0.096 0.904 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -3.973 3.387 10.375 11.614 hybrid contribution 2.195 -0.237 -1.019 2.431 sum -1.778 3.149 9.356 10.031 Atomic orbital electron populations 1.21465 0.97339 0.99338 0.99382 1.21839 0.94032 0.98298 1.00842 1.19083 0.91452 0.91864 0.85858 0.99209 1.22111 0.93820 1.40547 1.02338 0.91709 1.25609 1.01574 0.95291 0.95340 1.70067 1.36530 1.41847 1.06646 0.85895 0.81904 0.78213 0.77365 1.19251 1.21395 1.20363 1.59193 1.46175 1.13021 1.07102 1.21706 0.97267 0.88745 0.97950 1.21363 0.97306 1.00231 0.95723 1.21856 0.96848 0.98712 0.97165 1.21418 0.97877 0.95450 1.00930 1.21359 1.01733 0.95074 0.95419 1.20313 0.92790 0.94079 0.91681 0.96607 1.22914 0.86317 0.92603 0.99697 1.86536 1.34952 1.23468 1.91706 0.94235 0.92390 0.96533 0.94684 0.90487 0.93172 0.96005 0.93637 0.91481 0.91811 0.91899 0.91067 0.94153 0.90961 0.91500 0.91847 0.94961 0.90414 0.77665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.92 9.84 71.98 0.71 -4.21 16 2 C -0.11 -5.27 4.69 30.59 0.14 -5.13 16 3 C 0.22 11.06 1.65 44.17 0.07 11.14 16 4 H -0.01 -0.58 7.19 -2.39 -0.02 -0.59 16 5 C -0.55 -28.64 5.96 25.60 0.15 -28.48 16 6 H 0.07 3.33 4.88 -2.91 -0.01 3.32 16 7 C 0.02 1.18 5.32 84.65 0.45 1.63 16 8 N -0.91 -51.98 11.71 21.45 0.25 -51.73 16 9 Si 0.94 42.60 29.54 68.60 2.03 44.63 16 10 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 11 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 13 N -0.53 -22.12 2.80 -866.08 -2.43 -24.55 16 14 C 0.07 2.72 5.35 85.46 0.46 3.18 16 15 C -0.11 -3.29 5.41 30.16 0.16 -3.12 16 16 C -0.11 -2.77 5.91 31.27 0.18 -2.59 16 17 C -0.12 -3.32 5.31 30.26 0.16 -3.16 16 18 C -0.10 -3.10 4.60 30.35 0.14 -2.96 16 19 C 0.12 4.74 1.32 46.69 0.06 4.80 16 20 H 0.02 0.72 5.45 -2.38 -0.01 0.70 16 21 C 0.06 2.35 5.03 71.98 0.36 2.71 16 22 O -0.56 -19.24 11.15 -148.98 -1.66 -20.90 16 23 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.06 2.39 7.49 -2.39 -0.02 2.37 16 25 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.03 1.87 6.47 -2.39 -0.02 1.86 16 27 H 0.08 3.41 3.32 -2.39 -0.01 3.40 16 28 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 29 H 0.02 0.86 6.66 -2.39 -0.02 0.84 16 30 H 0.04 1.87 7.28 -2.39 -0.02 1.85 16 31 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.06 2.09 7.26 -2.39 -0.02 2.07 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.04 1.25 6.58 -2.39 -0.02 1.23 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.07 2.23 7.10 -2.39 -0.02 2.22 16 38 H 0.06 1.85 8.02 -2.38 -0.02 1.83 16 39 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 3.47 3.51 -2.39 -0.01 3.47 16 41 H 0.38 9.83 9.06 -74.06 -0.67 9.16 16 Total: -1.00 -58.57 292.49 1.59 -56.98 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.35 Total: 21.77 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: 3.06 Total: -26.20 kcal Atomic # 7 Polarization: -74.10 SS G_CDS: -2.18 Total: -76.28 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -1.66 Total: -20.90 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -58.57 1.59 -56.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253165830.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.964 kcal (2) G-P(sol) polarization free energy of solvation -58.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds