Wall clock time and date at job start Mon Mar 30 2020 04:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47028 * 2 1 4 4 H 1.09005 * 109.47078 * 54.99779 * 3 2 1 5 5 C 1.50704 * 109.47305 * 174.99446 * 3 2 1 6 6 H 1.08002 * 119.99677 * 119.99860 * 5 3 2 7 7 C 1.37871 * 120.00383 * 300.00410 * 5 3 2 8 8 N 1.31519 * 119.99923 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00250 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46730 * 60.00103 * 9 7 5 11 11 H 1.48500 * 109.47307 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47248 * 300.00212 * 9 7 5 13 13 N 1.46896 * 109.47438 * 295.00099 * 3 2 1 14 14 C 1.47952 * 110.99751 * 297.70207 * 13 3 2 15 15 C 1.53917 * 113.33153 * 192.17883 * 14 13 3 16 16 C 1.50535 * 112.93987 * 317.75906 * 15 14 13 17 17 C 1.54518 * 108.86314 * 91.74968 * 16 15 14 18 18 C 1.45879 * 111.67595 * 282.75536 * 17 16 15 19 19 C 1.44302 * 111.00202 * 170.28206 * 13 3 2 20 20 H 1.08997 * 109.69405 * 101.64241 * 19 13 3 21 21 C 1.52995 * 109.69313 * 341.05349 * 19 13 3 22 22 O 1.42897 * 109.47264 * 295.11746 * 21 19 13 23 23 H 1.09003 * 109.46877 * 60.00170 * 1 2 3 24 24 H 1.08997 * 109.46994 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47583 * 299.99967 * 1 2 3 26 26 H 1.08995 * 109.47583 * 240.00033 * 2 1 3 27 27 H 1.09003 * 109.46877 * 119.99830 * 2 1 3 28 28 H 0.96997 * 120.00495 * 180.02562 * 8 7 5 29 29 H 1.09002 * 108.70925 * 71.18617 * 14 13 3 30 30 H 1.09000 * 108.61070 * 313.10439 * 14 13 3 31 31 H 1.08992 * 108.79067 * 196.85973 * 15 14 13 32 32 H 1.09002 * 108.78919 * 78.64768 * 15 14 13 33 33 H 1.09002 * 109.56975 * 331.94142 * 16 15 14 34 34 H 1.09000 * 109.67750 * 211.62969 * 16 15 14 35 35 H 1.09006 * 109.03754 * 162.19144 * 17 16 15 36 36 H 1.09000 * 108.98288 * 43.28289 * 17 16 15 37 37 H 1.09003 * 108.84350 * 300.67186 * 18 17 16 38 38 H 1.09000 * 108.75754 * 182.25838 * 18 17 16 39 39 H 1.09001 * 109.47195 * 55.12361 * 21 19 13 40 40 H 1.09003 * 109.46958 * 175.11649 * 21 19 13 41 41 H 0.96701 * 114.00243 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1240 6 1 4.1472 1.8890 -0.6522 7 6 4.1433 0.8785 1.2281 8 7 3.4061 0.3375 2.1734 9 14 6.0050 0.8802 1.3813 10 1 6.5003 2.2802 1.3811 11 1 6.3978 0.2169 2.6506 12 1 6.5967 0.1456 0.2346 13 7 1.6514 2.0993 -1.2552 14 6 2.2690 1.4263 -2.4190 15 6 2.1471 2.2323 -3.7246 16 6 0.7893 2.8571 -3.9039 17 6 0.8117 4.2812 -3.3049 18 6 0.7282 4.2547 -1.8488 19 6 1.9139 3.5172 -1.1998 20 1 2.8299 3.7427 -1.7457 21 6 2.0597 3.9579 0.2581 22 8 0.8155 3.7772 0.9371 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8291 -0.0603 2.9504 29 1 1.7876 0.4585 -2.5593 30 1 3.3255 1.2631 -2.2062 31 1 2.3420 1.5682 -4.5666 32 1 2.8990 3.0214 -3.7216 33 1 0.0400 2.2561 -3.3887 34 1 0.5474 2.9111 -4.9653 35 1 -0.0329 4.8462 -3.6993 36 1 1.7379 4.7750 -3.5990 37 1 -0.1974 3.7576 -1.5582 38 1 0.7071 5.2803 -1.4801 39 1 2.8293 3.3580 0.7438 40 1 2.3433 5.0099 0.2929 41 1 0.8341 4.0372 1.8683 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253165831.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:39 Heat of formation + Delta-G solvation = -48.425834 kcal Electronic energy + Delta-G solvation = -19664.840040 eV Core-core repulsion = 16965.633312 eV Total energy + Delta-G solvation = -2699.206727 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.15086 -35.79209 -35.00931 -32.21947 -31.77969 -30.90434 -27.02566 -26.46831 -24.84918 -22.72624 -22.08291 -20.16654 -19.68645 -18.02317 -16.53551 -16.05099 -15.63492 -15.11019 -14.50748 -13.70867 -13.47574 -13.34632 -13.15297 -12.78448 -12.60744 -12.27894 -11.92005 -11.43757 -11.25167 -11.14587 -11.03788 -10.79952 -10.61182 -10.40471 -10.17523 -10.04505 -9.93868 -9.76616 -9.64960 -9.53157 -9.17684 -8.96390 -8.80576 -8.23408 -6.84880 -5.95207 -4.09163 3.24982 3.31297 3.33941 4.37838 4.98539 5.21483 5.25379 5.25919 5.41079 5.46273 5.82485 5.86035 5.97822 6.12547 6.17609 6.24604 6.37754 6.45180 6.50888 6.57820 6.62880 6.64235 6.68094 6.80860 6.84196 6.93028 6.95948 7.01286 7.16102 7.26152 7.40009 7.52845 7.73016 7.91099 8.15900 8.27418 8.42876 8.49839 8.74614 9.05525 9.55489 10.99974 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023107 B = 0.009454 C = 0.009289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.486936 B = 2960.966474 C = 3013.677646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 C 0.201 3.799 4 H 0.076 0.924 5 C -0.542 4.542 6 H 0.052 0.948 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.881 3.119 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.530 5.530 14 C 0.061 3.939 15 C -0.120 4.120 16 C -0.108 4.108 17 C -0.110 4.110 18 C -0.104 4.104 19 C 0.115 3.885 20 H 0.042 0.958 21 C 0.057 3.943 22 O -0.557 6.557 23 H 0.046 0.954 24 H 0.019 0.981 25 H 0.040 0.960 26 H 0.026 0.974 27 H 0.088 0.912 28 H 0.261 0.739 29 H 0.058 0.942 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.045 0.955 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.071 0.929 38 H 0.043 0.957 39 H 0.098 0.902 40 H 0.018 0.982 41 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.363 5.421 -6.141 8.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.150 4.150 3 C 0.095 3.905 4 H 0.094 0.906 5 C -0.581 4.581 6 H 0.070 0.930 7 C -0.134 4.134 8 N -0.519 5.519 9 Si 0.709 3.291 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.254 5.254 14 C -0.067 4.067 15 C -0.158 4.158 16 C -0.146 4.146 17 C -0.147 4.147 18 C -0.143 4.143 19 C 0.005 3.995 20 H 0.060 0.940 21 C -0.021 4.021 22 O -0.361 6.361 23 H 0.065 0.935 24 H 0.038 0.962 25 H 0.059 0.941 26 H 0.045 0.955 27 H 0.106 0.894 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.115 0.885 40 H 0.036 0.964 41 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -4.009 5.061 -6.614 9.243 hybrid contribution 2.306 0.237 0.658 2.409 sum -1.704 5.298 -5.956 8.152 Atomic orbital electron populations 1.21659 0.98885 0.97823 1.00749 1.21594 0.92297 0.99698 1.01371 1.19764 0.92204 0.91299 0.87212 0.90646 1.21802 0.93467 1.37761 1.05083 0.92984 1.24904 0.97370 0.95165 0.95945 1.69879 1.34646 1.38050 1.09321 0.86842 0.86736 0.78161 0.77357 1.20468 1.21287 1.20416 1.61184 1.59440 1.00715 1.04087 1.22285 0.98633 0.96683 0.89103 1.21427 0.97195 0.99334 0.97802 1.21269 0.98276 0.96302 0.98727 1.20568 1.00344 0.96688 0.97134 1.20420 1.00825 0.98843 0.94170 1.20995 0.95124 0.90241 0.93148 0.94014 1.22849 0.87909 0.97441 0.93852 1.86562 1.34457 1.88869 1.26206 0.93470 0.96169 0.94120 0.95522 0.89395 0.92899 0.92313 0.93779 0.92910 0.93257 0.90859 0.93574 0.93371 0.93451 0.91061 0.93787 0.88466 0.96398 0.79230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 9.80 37.16 0.36 -2.48 16 2 C -0.11 -2.66 5.08 -26.73 -0.14 -2.80 16 3 C 0.20 4.77 1.18 -68.87 -0.08 4.69 16 4 H 0.08 1.94 4.66 -51.93 -0.24 1.70 16 5 C -0.54 -13.84 5.21 -34.44 -0.18 -14.01 16 6 H 0.05 1.35 6.55 -52.49 -0.34 1.01 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -23.95 11.29 55.43 0.63 -23.33 16 9 Si 0.88 20.56 29.54 -169.99 -5.02 15.53 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.53 -11.02 3.38 -219.99 -0.74 -11.77 16 14 C 0.06 1.20 4.61 -2.77 -0.01 1.18 16 15 C -0.12 -1.94 5.27 -27.48 -0.14 -2.08 16 16 C -0.11 -1.63 5.63 -27.17 -0.15 -1.79 16 17 C -0.11 -1.64 5.35 -29.30 -0.16 -1.79 16 18 C -0.10 -1.78 4.33 -29.59 -0.13 -1.91 16 19 C 0.11 2.23 1.92 -68.59 -0.13 2.09 16 20 H 0.04 0.83 6.79 -51.93 -0.35 0.48 16 21 C 0.06 1.11 5.72 37.16 0.21 1.33 16 22 O -0.56 -10.72 11.25 -35.23 -0.40 -11.12 16 23 H 0.05 0.98 7.75 -51.93 -0.40 0.58 16 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.03 0.63 6.45 -51.93 -0.34 0.29 16 27 H 0.09 2.34 5.95 -51.93 -0.31 2.03 16 28 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 29 H 0.06 1.18 6.84 -51.93 -0.36 0.83 16 30 H 0.04 0.97 5.93 -51.93 -0.31 0.66 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.80 6.66 -51.93 -0.35 0.45 16 33 H 0.07 1.22 7.78 -51.93 -0.40 0.81 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.68 7.58 -51.93 -0.39 0.29 16 37 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 38 H 0.04 0.71 7.95 -51.93 -0.41 0.30 16 39 H 0.10 2.22 4.82 -51.93 -0.25 1.96 16 40 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.36 5.60 9.12 45.56 0.42 6.02 16 LS Contribution 296.27 15.07 4.46 4.46 Total: -1.00 -26.82 296.27 -7.84 -34.67 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -6.13 Total: 7.40 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -0.64 Total: -15.86 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: -0.12 Total: -35.09 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: -0.40 Total: -11.12 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -26.82 -7.84 -34.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253165831.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.759 kcal (2) G-P(sol) polarization free energy of solvation -26.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds