Wall clock time and date at job start Mon Mar 30 2020 04:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47028 * 2 1 4 4 H 1.09005 * 109.47078 * 54.99779 * 3 2 1 5 5 C 1.50704 * 109.47305 * 174.99446 * 3 2 1 6 6 H 1.08002 * 119.99677 * 119.99860 * 5 3 2 7 7 C 1.37871 * 120.00383 * 300.00410 * 5 3 2 8 8 N 1.31519 * 119.99923 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00250 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46730 * 60.00103 * 9 7 5 11 11 H 1.48500 * 109.47307 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47248 * 300.00212 * 9 7 5 13 13 N 1.46896 * 109.47438 * 295.00099 * 3 2 1 14 14 C 1.47952 * 110.99751 * 297.70207 * 13 3 2 15 15 C 1.53917 * 113.33153 * 192.17883 * 14 13 3 16 16 C 1.50535 * 112.93987 * 317.75906 * 15 14 13 17 17 C 1.54518 * 108.86314 * 91.74968 * 16 15 14 18 18 C 1.45879 * 111.67595 * 282.75536 * 17 16 15 19 19 C 1.44302 * 111.00202 * 170.28206 * 13 3 2 20 20 H 1.08997 * 109.69405 * 101.64241 * 19 13 3 21 21 C 1.52995 * 109.69313 * 341.05349 * 19 13 3 22 22 O 1.42897 * 109.47264 * 295.11746 * 21 19 13 23 23 H 1.09003 * 109.46877 * 60.00170 * 1 2 3 24 24 H 1.08997 * 109.46994 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47583 * 299.99967 * 1 2 3 26 26 H 1.08995 * 109.47583 * 240.00033 * 2 1 3 27 27 H 1.09003 * 109.46877 * 119.99830 * 2 1 3 28 28 H 0.96997 * 120.00495 * 180.02562 * 8 7 5 29 29 H 1.09002 * 108.70925 * 71.18617 * 14 13 3 30 30 H 1.09000 * 108.61070 * 313.10439 * 14 13 3 31 31 H 1.08992 * 108.79067 * 196.85973 * 15 14 13 32 32 H 1.09002 * 108.78919 * 78.64768 * 15 14 13 33 33 H 1.09002 * 109.56975 * 331.94142 * 16 15 14 34 34 H 1.09000 * 109.67750 * 211.62969 * 16 15 14 35 35 H 1.09006 * 109.03754 * 162.19144 * 17 16 15 36 36 H 1.09000 * 108.98288 * 43.28289 * 17 16 15 37 37 H 1.09003 * 108.84350 * 300.67186 * 18 17 16 38 38 H 1.09000 * 108.75754 * 182.25838 * 18 17 16 39 39 H 1.09001 * 109.47195 * 55.12361 * 21 19 13 40 40 H 1.09003 * 109.46958 * 175.11649 * 21 19 13 41 41 H 0.96701 * 114.00243 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1240 6 1 4.1472 1.8890 -0.6522 7 6 4.1433 0.8785 1.2281 8 7 3.4061 0.3375 2.1734 9 14 6.0050 0.8802 1.3813 10 1 6.5003 2.2802 1.3811 11 1 6.3978 0.2169 2.6506 12 1 6.5967 0.1456 0.2346 13 7 1.6514 2.0993 -1.2552 14 6 2.2690 1.4263 -2.4190 15 6 2.1471 2.2323 -3.7246 16 6 0.7893 2.8571 -3.9039 17 6 0.8117 4.2812 -3.3049 18 6 0.7282 4.2547 -1.8488 19 6 1.9139 3.5172 -1.1998 20 1 2.8299 3.7427 -1.7457 21 6 2.0597 3.9579 0.2581 22 8 0.8155 3.7772 0.9371 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8291 -0.0603 2.9504 29 1 1.7876 0.4585 -2.5593 30 1 3.3255 1.2631 -2.2062 31 1 2.3420 1.5682 -4.5666 32 1 2.8990 3.0214 -3.7216 33 1 0.0400 2.2561 -3.3887 34 1 0.5474 2.9111 -4.9653 35 1 -0.0329 4.8462 -3.6993 36 1 1.7379 4.7750 -3.5990 37 1 -0.1974 3.7576 -1.5582 38 1 0.7071 5.2803 -1.4801 39 1 2.8293 3.3580 0.7438 40 1 2.3433 5.0099 0.2929 41 1 0.8341 4.0372 1.8683 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253165831.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:39 Heat of formation + Delta-G solvation = -65.462771 kcal Electronic energy + Delta-G solvation = -19665.578817 eV Core-core repulsion = 16965.633312 eV Total energy + Delta-G solvation = -2699.945504 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.71948 -37.24151 -36.69613 -34.07299 -33.23580 -32.63759 -28.80641 -28.03383 -26.44786 -24.54871 -23.57571 -21.80915 -21.08350 -19.75840 -18.10799 -17.92606 -17.25785 -16.71925 -16.20352 -15.28908 -14.99108 -14.95192 -14.63418 -14.52551 -14.10637 -13.89029 -13.39392 -13.18410 -13.00907 -12.88262 -12.65637 -12.45182 -12.34983 -12.12201 -11.81393 -11.49809 -11.38572 -11.31756 -11.27119 -11.11922 -10.94091 -10.64581 -10.56863 -10.17813 -8.62486 -7.91530 -6.14482 1.36818 1.39777 1.45083 2.42120 3.19365 3.45343 3.76129 3.96714 4.08736 4.18908 4.36699 4.47279 4.59265 4.63676 4.71111 4.80345 4.86792 4.90090 4.99256 5.01787 5.05027 5.22173 5.27447 5.29777 5.37496 5.41803 5.48616 5.53102 5.57634 5.60324 5.63521 5.70627 5.79878 6.00655 6.21533 6.36017 6.57099 6.96223 7.09370 7.15864 7.52770 8.97334 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023107 B = 0.009454 C = 0.009289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.486936 B = 2960.966474 C = 3013.677646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.108 4.108 3 C 0.208 3.792 4 H 0.057 0.943 5 C -0.539 4.539 6 H 0.042 0.958 7 C 0.026 3.974 8 N -0.906 5.906 9 Si 0.934 3.066 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.280 1.280 13 N -0.527 5.527 14 C 0.063 3.937 15 C -0.113 4.113 16 C -0.104 4.104 17 C -0.110 4.110 18 C -0.092 4.092 19 C 0.109 3.891 20 H 0.037 0.963 21 C 0.062 3.938 22 O -0.568 6.568 23 H 0.051 0.949 24 H 0.038 0.962 25 H 0.032 0.968 26 H 0.020 0.980 27 H 0.059 0.941 28 H 0.259 0.741 29 H 0.050 0.950 30 H 0.016 0.984 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.042 0.958 41 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.752 6.578 -7.697 10.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.147 4.147 3 C 0.101 3.899 4 H 0.075 0.925 5 C -0.578 4.578 6 H 0.060 0.940 7 C -0.174 4.174 8 N -0.545 5.545 9 Si 0.761 3.239 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.206 1.206 13 N -0.251 5.251 14 C -0.065 4.065 15 C -0.150 4.150 16 C -0.142 4.142 17 C -0.147 4.147 18 C -0.130 4.130 19 C -0.001 4.001 20 H 0.055 0.945 21 C -0.016 4.016 22 O -0.373 6.373 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.038 0.962 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.034 0.966 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.060 0.940 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -4.399 6.234 -8.172 11.180 hybrid contribution 2.414 -0.109 1.152 2.677 sum -1.985 6.124 -7.021 9.526 Atomic orbital electron populations 1.21495 0.96724 0.98979 1.00496 1.21482 0.94176 0.99512 0.99533 1.19523 0.91030 0.91122 0.88176 0.92526 1.21948 0.94526 1.36847 1.04475 0.93958 1.25484 1.00718 0.95308 0.95925 1.69995 1.35819 1.39030 1.09693 0.85996 0.82729 0.78158 0.77004 1.19933 1.21204 1.20603 1.61162 1.59263 1.01496 1.03214 1.22287 0.96497 0.97200 0.90545 1.21373 0.98273 0.99336 0.96052 1.21243 0.96691 0.95955 1.00303 1.20565 1.01798 0.96952 0.95398 1.20297 0.98378 0.98635 0.95681 1.21144 0.96145 0.89497 0.93308 0.94521 1.22667 0.87055 0.98122 0.93739 1.86513 1.34091 1.89154 1.27568 0.92975 0.94328 0.94911 0.96155 0.92282 0.93159 0.93169 0.96619 0.90996 0.93088 0.92527 0.90786 0.91102 0.92568 0.92891 0.92673 0.92069 0.93978 0.77483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 9.80 71.98 0.71 -4.35 16 2 C -0.11 -5.29 5.08 30.59 0.16 -5.13 16 3 C 0.21 10.07 1.18 44.17 0.05 10.12 16 4 H 0.06 2.99 4.66 -2.38 -0.01 2.98 16 5 C -0.54 -28.08 5.21 25.60 0.13 -27.95 16 6 H 0.04 2.25 6.55 -2.91 -0.02 2.23 16 7 C 0.03 1.36 5.29 84.65 0.45 1.81 16 8 N -0.91 -50.45 11.29 21.45 0.24 -50.21 16 9 Si 0.93 42.77 29.54 68.60 2.03 44.80 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 N -0.53 -21.87 3.38 -849.91 -2.87 -24.74 16 14 C 0.06 2.45 4.61 86.41 0.40 2.84 16 15 C -0.11 -3.40 5.27 30.11 0.16 -3.24 16 16 C -0.10 -2.83 5.63 30.31 0.17 -2.66 16 17 C -0.11 -2.89 5.35 28.93 0.15 -2.74 16 18 C -0.09 -2.92 4.33 28.74 0.12 -2.80 16 19 C 0.11 4.11 1.92 45.73 0.09 4.20 16 20 H 0.04 1.43 6.79 -2.39 -0.02 1.41 16 21 C 0.06 2.40 5.72 71.98 0.41 2.81 16 22 O -0.57 -21.57 11.25 -148.98 -1.68 -23.24 16 23 H 0.05 2.13 7.75 -2.39 -0.02 2.11 16 24 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.02 0.97 6.45 -2.39 -0.02 0.96 16 27 H 0.06 3.23 5.95 -2.39 -0.01 3.22 16 28 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 29 H 0.05 2.01 6.84 -2.39 -0.02 2.00 16 30 H 0.02 0.69 5.93 -2.39 -0.01 0.68 16 31 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.05 1.53 6.66 -2.39 -0.02 1.52 16 33 H 0.06 1.75 7.78 -2.39 -0.02 1.73 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.06 1.41 7.58 -2.39 -0.02 1.39 16 37 H 0.05 1.89 8.08 -2.39 -0.02 1.88 16 38 H 0.05 1.63 7.95 -2.39 -0.02 1.61 16 39 H 0.06 2.84 4.82 -2.39 -0.01 2.83 16 40 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.38 11.52 9.12 -74.06 -0.68 10.85 16 Total: -1.00 -57.62 296.27 1.05 -56.57 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.33 Total: 23.90 kcal Atomic # 6 Polarization: -30.08 SS G_CDS: 3.00 Total: -27.08 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: -2.63 Total: -74.95 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -1.68 Total: -23.24 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -57.62 1.05 -56.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253165831.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.890 kcal (2) G-P(sol) polarization free energy of solvation -57.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds