Wall clock time and date at job start Mon Mar 30 2020 04:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47402 * 2 1 4 4 H 1.08999 * 109.46589 * 304.33545 * 3 2 1 5 5 C 1.50698 * 109.46984 * 184.33585 * 3 2 1 6 6 H 1.07999 * 119.99947 * 239.99462 * 5 3 2 7 7 C 1.37877 * 120.00201 * 60.00375 * 5 3 2 8 8 N 1.31518 * 119.99920 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00089 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47246 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47275 * 119.99887 * 9 7 5 12 12 H 1.48510 * 109.47004 * 239.99460 * 9 7 5 13 13 N 1.46899 * 109.47033 * 64.33600 * 3 2 1 14 14 C 1.46844 * 111.00043 * 65.64841 * 13 3 2 15 15 C 1.53034 * 109.52269 * 185.83658 * 14 13 3 16 16 C 1.53117 * 109.28073 * 300.82395 * 15 14 13 17 17 H 1.09004 * 109.51943 * 297.74798 * 16 15 14 18 18 O 1.42905 * 109.57313 * 177.59178 * 16 15 14 19 19 C 1.53113 * 109.15997 * 57.65114 * 16 15 14 20 20 C 1.53004 * 109.50319 * 182.40339 * 19 16 15 21 21 C 1.53005 * 109.53373 * 62.31074 * 19 16 15 22 22 C 1.46846 * 110.99769 * 189.86105 * 13 3 2 23 23 H 1.08996 * 109.47079 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46850 * 60.00349 * 1 2 3 25 25 H 1.08997 * 109.47293 * 300.00254 * 1 2 3 26 26 H 1.09004 * 109.47306 * 119.99923 * 2 1 3 27 27 H 1.09005 * 109.47573 * 239.99797 * 2 1 3 28 28 H 0.97001 * 119.99616 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.46652 * 305.85851 * 14 13 3 30 30 H 1.09002 * 109.45998 * 65.82667 * 14 13 3 31 31 H 1.09000 * 109.50171 * 180.88066 * 15 14 13 32 32 H 1.09004 * 109.53634 * 60.78811 * 15 14 13 33 33 H 0.96700 * 113.99919 * 60.28793 * 18 16 15 34 34 H 1.09001 * 109.47182 * 179.80413 * 20 19 16 35 35 H 1.08997 * 109.47272 * 299.80593 * 20 19 16 36 36 H 1.09001 * 109.47029 * 59.80670 * 20 19 16 37 37 H 1.08995 * 109.47018 * 300.17005 * 21 19 16 38 38 H 1.08993 * 109.47326 * 60.17518 * 21 19 16 39 39 H 1.08999 * 109.47104 * 180.17474 * 21 19 16 40 40 H 1.09005 * 109.46341 * 294.17653 * 22 13 3 41 41 H 1.08996 * 109.46640 * 54.14435 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6146 1.9782 -0.8486 5 6 3.5432 1.4437 -0.1074 6 1 4.1400 1.8914 0.6735 7 6 4.1566 0.8736 -1.2027 8 7 3.4298 0.3282 -2.1536 9 14 6.0198 0.8758 -1.3362 10 1 6.6006 1.5464 -0.1453 11 1 6.5127 -0.5232 -1.4066 12 1 6.4273 1.6065 -2.5632 13 7 1.6378 2.1041 1.2484 14 6 2.3004 1.4906 2.4063 15 6 1.7501 2.1051 3.6953 16 6 1.9998 3.6157 3.6820 17 1 3.0725 3.8073 3.6553 18 8 1.4386 4.2041 4.8572 19 6 1.3404 4.2231 2.4407 20 6 1.6357 5.7234 2.3878 21 6 -0.1723 4.0022 2.5051 22 6 1.9025 3.5472 1.1880 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 3.8614 -0.0732 -2.9240 29 1 2.1115 0.4171 2.4062 30 1 3.3739 1.6703 2.3478 31 1 2.2533 1.6606 4.5540 32 1 0.6791 1.9138 3.7621 33 1 1.8109 3.8652 5.6828 34 1 1.1690 6.1546 1.5022 35 1 1.2351 6.2042 3.2802 36 1 2.7135 5.8802 2.3434 37 1 -0.3821 2.9334 2.5441 38 1 -0.5721 4.4838 3.3974 39 1 -0.6403 4.4322 1.6196 40 1 2.9779 3.7173 1.1352 41 1 1.4246 3.9675 0.3032 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308856734.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:29 Heat of formation + Delta-G solvation = -81.936515 kcal Electronic energy + Delta-G solvation = -19238.063986 eV Core-core repulsion = 16537.404127 eV Total energy + Delta-G solvation = -2700.659860 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.88376 -37.96703 -35.83367 -34.29539 -33.08992 -31.69031 -28.43497 -28.01510 -27.05287 -25.36549 -23.75108 -23.00347 -20.76282 -19.44141 -18.27091 -18.06966 -17.10400 -16.29252 -15.87969 -15.56392 -15.32354 -14.90214 -14.63643 -14.25164 -13.93587 -13.67648 -13.40301 -13.29884 -13.12156 -12.83309 -12.79771 -12.62628 -12.55627 -12.29900 -12.04780 -11.87622 -11.76535 -11.66547 -11.50182 -11.22687 -10.96408 -10.87577 -10.56230 -10.40616 -8.87113 -8.02163 -6.25198 1.34143 1.37662 1.46459 2.39056 3.15099 3.31597 3.47759 3.79660 3.92466 4.16093 4.30317 4.47331 4.52681 4.57640 4.65336 4.76000 4.83314 4.88602 4.93299 4.94070 4.96822 4.99739 5.10420 5.14336 5.24308 5.30107 5.34436 5.40480 5.44907 5.47879 5.53296 5.64040 5.70452 5.81945 6.09487 6.22022 6.41296 6.71406 6.97230 6.97957 7.45681 8.92013 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025132 B = 0.008257 C = 0.007315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.863733 B = 3390.365681 C = 3826.652111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.105 4.105 3 C 0.220 3.780 4 H 0.002 0.998 5 C -0.548 4.548 6 H 0.049 0.951 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.944 3.056 10 H -0.273 1.273 11 H -0.280 1.280 12 H -0.283 1.283 13 N -0.523 5.523 14 C 0.066 3.934 15 C -0.139 4.139 16 C 0.123 3.877 17 H 0.041 0.959 18 O -0.568 6.568 19 C -0.053 4.053 20 C -0.131 4.131 21 C -0.115 4.115 22 C 0.079 3.921 23 H 0.044 0.956 24 H 0.031 0.969 25 H 0.058 0.942 26 H 0.032 0.968 27 H 0.061 0.939 28 H 0.261 0.739 29 H 0.064 0.936 30 H 0.015 0.985 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.390 0.610 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.046 0.954 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.044 0.956 40 H 0.012 0.988 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.741 5.140 11.374 13.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.143 4.143 3 C 0.113 3.887 4 H 0.020 0.980 5 C -0.587 4.587 6 H 0.067 0.933 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.770 3.230 10 H -0.198 1.198 11 H -0.206 1.206 12 H -0.209 1.209 13 N -0.247 5.247 14 C -0.063 4.063 15 C -0.177 4.177 16 C 0.064 3.936 17 H 0.059 0.941 18 O -0.375 6.375 19 C -0.053 4.053 20 C -0.189 4.189 21 C -0.172 4.172 22 C -0.050 4.050 23 H 0.063 0.937 24 H 0.050 0.950 25 H 0.077 0.923 26 H 0.051 0.949 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.033 0.967 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.239 0.761 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.030 0.970 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.585 5.308 10.813 12.888 hybrid contribution 2.506 -0.448 -0.470 2.589 sum -2.079 4.860 10.342 11.615 Atomic orbital electron populations 1.21559 0.96308 0.99705 1.00669 1.21431 0.94461 0.98131 1.00289 1.19036 0.91618 0.91554 0.86527 0.98019 1.22001 0.94133 1.37236 1.05357 0.93326 1.25591 1.01612 0.95064 0.95576 1.70009 1.36121 1.38878 1.09946 0.85732 0.81770 0.77694 0.77766 1.19758 1.20588 1.20877 1.62331 1.56810 1.02017 1.03500 1.21838 0.95394 0.98735 0.90299 1.22310 1.02620 0.95694 0.97028 1.21634 0.95013 0.91466 0.85473 0.94094 1.86450 1.67446 1.67424 1.16228 1.20569 0.97134 0.95343 0.92273 1.21731 1.00950 0.94065 1.02137 1.21564 0.93161 1.01928 1.00580 1.21872 0.97017 0.89241 0.96846 0.93674 0.95014 0.92332 0.94893 0.92088 0.92988 0.91772 0.96690 0.90008 0.90510 0.76111 0.92481 0.91330 0.93445 0.92408 0.92376 0.93682 0.97014 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.97 9.79 71.98 0.71 -4.27 16 2 C -0.10 -4.94 5.14 30.59 0.16 -4.78 16 3 C 0.22 10.84 1.71 44.17 0.08 10.92 16 4 H 0.00 0.11 7.99 -2.39 -0.02 0.09 16 5 C -0.55 -29.35 7.23 25.60 0.19 -29.17 16 6 H 0.05 2.63 5.84 -2.91 -0.02 2.62 16 7 C 0.02 1.17 5.29 84.65 0.45 1.61 16 8 N -0.91 -51.75 11.29 21.45 0.24 -51.51 16 9 Si 0.94 43.48 29.54 68.60 2.03 45.51 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 13 N -0.52 -21.40 3.32 -875.54 -2.90 -24.30 16 14 C 0.07 2.46 4.78 86.33 0.41 2.87 16 15 C -0.14 -3.95 5.37 30.64 0.16 -3.78 16 16 C 0.12 3.44 2.63 30.67 0.08 3.52 16 17 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 18 O -0.57 -13.35 12.01 -148.98 -1.79 -15.14 16 19 C -0.05 -1.62 0.60 -52.13 -0.03 -1.65 16 20 C -0.13 -3.58 8.36 71.98 0.60 -2.98 16 21 C -0.12 -3.39 7.87 71.98 0.57 -2.82 16 22 C 0.08 3.05 3.91 86.32 0.34 3.38 16 23 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.06 2.19 7.73 -2.39 -0.02 2.18 16 26 H 0.03 1.51 6.24 -2.39 -0.01 1.50 16 27 H 0.06 3.27 5.97 -2.38 -0.01 3.26 16 28 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 29 H 0.06 2.48 6.13 -2.39 -0.01 2.47 16 30 H 0.01 0.62 6.38 -2.39 -0.02 0.61 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.08 2.21 6.58 -2.39 -0.02 2.19 16 33 H 0.39 5.74 9.09 -74.06 -0.67 5.07 16 34 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.75 7.76 -2.39 -0.02 1.73 16 36 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.06 1.82 6.01 -2.39 -0.01 1.81 16 38 H 0.06 1.59 7.64 -2.39 -0.02 1.57 16 39 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.01 0.50 7.28 -2.38 -0.02 0.48 16 41 H 0.06 2.24 8.02 -2.39 -0.02 2.22 16 Total: -1.00 -58.89 304.12 1.60 -57.29 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.32 Total: 15.29 kcal Atomic # 6 Polarization: -30.84 SS G_CDS: 3.70 Total: -27.14 kcal Atomic # 7 Polarization: -73.14 SS G_CDS: -2.66 Total: -75.81 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -1.79 Total: -15.14 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -58.89 1.60 -57.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308856734.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.651 kcal (2) G-P(sol) polarization free energy of solvation -58.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds