Wall clock time and date at job start Mon Mar 30 2020 04:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47269 * 2 1 4 4 N 1.46504 * 109.47479 * 179.97438 * 3 2 1 5 5 C 1.36931 * 119.99671 * 89.99833 * 4 3 2 6 6 H 1.08000 * 120.00596 * 34.29277 * 5 4 3 7 7 C 1.38817 * 119.99548 * 214.28912 * 5 4 3 8 8 N 1.31620 * 120.00341 * 29.02016 * 7 5 4 9 9 Si 1.86805 * 120.00096 * 209.02021 * 7 5 4 10 10 H 1.48504 * 109.46918 * 266.50998 * 9 7 5 11 11 H 1.48503 * 109.46652 * 26.50749 * 9 7 5 12 12 H 1.48494 * 109.47148 * 146.50771 * 9 7 5 13 13 C 1.46504 * 119.99606 * 270.00087 * 4 3 2 14 14 C 1.52996 * 109.46921 * 264.39725 * 13 4 3 15 15 H 1.09002 * 109.47439 * 305.00064 * 14 13 4 16 16 C 1.52998 * 109.47209 * 65.00643 * 14 13 4 17 17 C 1.52996 * 109.47209 * 179.97438 * 16 14 13 18 18 C 1.53006 * 109.47197 * 299.99628 * 17 16 14 19 19 C 1.52998 * 109.46738 * 60.00083 * 18 17 16 20 20 H 1.09000 * 109.47283 * 180.02562 * 19 18 17 21 21 O 1.42903 * 109.47446 * 60.00283 * 19 18 17 22 22 C 1.53005 * 109.46848 * 185.00693 * 14 13 4 23 23 H 1.09000 * 109.47501 * 299.99844 * 1 2 3 24 24 H 1.09003 * 109.47078 * 60.00023 * 1 2 3 25 25 H 1.09003 * 109.47595 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46987 * 239.99593 * 2 1 3 27 27 H 1.09003 * 109.47078 * 119.99976 * 2 1 3 28 28 H 1.09006 * 109.47166 * 59.99616 * 3 2 1 29 29 H 1.09003 * 109.47051 * 299.99993 * 3 2 1 30 30 H 0.97006 * 119.99835 * 0.02562 * 8 7 5 31 31 H 1.08995 * 109.47523 * 24.40076 * 13 4 3 32 32 H 1.09007 * 109.46484 * 144.39969 * 13 4 3 33 33 H 1.09000 * 109.46556 * 299.99640 * 16 14 13 34 34 H 1.08994 * 109.47088 * 59.99448 * 16 14 13 35 35 H 1.09002 * 109.47456 * 179.97438 * 17 16 14 36 36 H 1.09002 * 109.47439 * 59.99421 * 17 16 14 37 37 H 1.08994 * 109.46954 * 300.00463 * 18 17 16 38 38 H 1.08992 * 109.47153 * 179.97438 * 18 17 16 39 39 H 0.96691 * 114.00047 * 59.99361 * 21 19 18 40 40 H 1.08999 * 109.46750 * 299.99400 * 22 14 13 41 41 H 1.08998 * 109.47554 * 60.00063 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1901 1.4423 -1.1850 6 1 3.7913 1.9691 -2.0393 7 6 5.3974 0.7650 -1.2888 8 7 5.6247 -0.2935 -0.5403 9 14 6.6995 1.3560 -2.4908 10 1 6.5511 0.6300 -3.7778 11 1 6.5341 2.8134 -2.7226 12 1 8.0483 1.0942 -1.9275 13 6 4.2369 1.4427 1.2697 14 6 4.6136 2.8783 1.6409 15 1 5.1678 3.3326 0.8195 16 6 3.3421 3.6867 1.9070 17 6 3.7189 5.1222 2.2788 18 6 4.5890 5.1115 3.5373 19 6 5.8604 4.3031 3.2713 20 1 6.4801 4.2950 4.1679 21 8 6.5873 4.8989 2.1948 22 6 5.4841 2.8681 2.8992 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 4.9483 -0.6007 0.0836 31 1 3.6078 1.0183 2.0521 32 1 5.1423 0.8444 1.1670 33 1 2.7221 3.6940 1.0105 34 1 2.7880 3.2325 2.7283 35 1 2.8130 5.6982 2.4679 36 1 4.2733 5.5767 1.4577 37 1 4.0346 4.6570 4.3583 38 1 4.8577 6.1340 3.8019 39 1 6.8591 5.8117 2.3615 40 1 4.9299 2.4139 3.7206 41 1 6.3899 2.2922 2.7097 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308886101.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:43 Heat of formation + Delta-G solvation = -63.737387 kcal Electronic energy + Delta-G solvation = -18852.280434 eV Core-core repulsion = 16152.409748 eV Total energy + Delta-G solvation = -2699.870686 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.93968 -36.46992 -34.52738 -32.96120 -31.24617 -30.04473 -29.11125 -25.68311 -25.03723 -22.24067 -21.98347 -20.79210 -19.70566 -19.18654 -17.11134 -16.49822 -15.32320 -14.76285 -14.43237 -14.13419 -13.74536 -13.49481 -13.19365 -13.11369 -12.83405 -12.31215 -12.12563 -11.91841 -11.48823 -11.22516 -11.16567 -10.85291 -10.67533 -10.55430 -10.53504 -10.36104 -10.14423 -10.00376 -9.84310 -9.61878 -9.53073 -9.22258 -9.17404 -8.19059 -6.61069 -5.97079 -3.17232 3.56027 3.63476 3.77228 4.54495 4.68368 5.03009 5.06246 5.17156 5.37829 5.50289 5.65453 5.70861 5.72963 5.79008 5.82297 5.88343 5.99621 6.03102 6.12502 6.15851 6.27660 6.35096 6.43408 6.47568 6.52408 6.56641 6.64554 6.67483 6.75484 6.95887 7.00819 7.02771 7.21372 7.41056 7.49266 7.93948 8.22930 8.71628 9.28218 9.97846 10.43865 11.28019 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.015934 B = 0.010310 C = 0.007055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.855942 B = 2715.156546 C = 3967.770383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.144 4.144 3 C 0.149 3.851 4 N -0.592 5.592 5 C -0.348 4.348 6 H 0.048 0.952 7 C -0.019 4.019 8 N -0.906 5.906 9 Si 1.063 2.937 10 H -0.296 1.296 11 H -0.292 1.292 12 H -0.287 1.287 13 C 0.141 3.859 14 C -0.093 4.093 15 H 0.080 0.920 16 C -0.104 4.104 17 C -0.114 4.114 18 C -0.148 4.148 19 C 0.107 3.893 20 H 0.044 0.956 21 O -0.555 6.555 22 C -0.107 4.107 23 H 0.044 0.956 24 H 0.047 0.953 25 H 0.042 0.958 26 H 0.060 0.940 27 H 0.047 0.953 28 H 0.034 0.966 29 H 0.039 0.961 30 H 0.269 0.731 31 H 0.023 0.977 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.043 0.957 35 H 0.049 0.951 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.366 0.634 40 H 0.064 0.936 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.620 8.529 8.190 12.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.184 4.184 3 C 0.023 3.977 4 N -0.313 5.313 5 C -0.477 4.477 6 H 0.066 0.934 7 C -0.222 4.222 8 N -0.546 5.546 9 Si 0.893 3.107 10 H -0.224 1.224 11 H -0.218 1.218 12 H -0.213 1.213 13 C 0.015 3.985 14 C -0.114 4.114 15 H 0.099 0.901 16 C -0.142 4.142 17 C -0.151 4.151 18 C -0.186 4.186 19 C 0.048 3.952 20 H 0.062 0.938 21 O -0.359 6.359 22 C -0.145 4.145 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.042 0.958 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.212 0.788 40 H 0.083 0.917 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.198 7.631 7.308 10.792 hybrid contribution -1.542 0.838 0.911 1.977 sum -3.740 8.468 8.219 12.380 Atomic orbital electron populations 1.21738 0.97654 1.00294 1.00704 1.22147 0.93322 1.01303 1.01600 1.20979 0.85600 0.93067 0.98097 1.43902 0.99409 1.85816 1.02138 1.19758 1.06153 1.30862 0.90933 0.93424 1.25774 1.00248 0.93317 1.02847 1.70775 1.40011 1.18156 1.25646 0.83569 0.76494 0.75399 0.75235 1.22410 1.21809 1.21327 1.20989 0.97527 0.93633 0.86349 1.21552 0.94507 0.99144 0.96211 0.90131 1.21528 0.98416 0.93815 1.00410 1.21452 0.98208 0.98212 0.97267 1.22222 0.97910 0.99479 0.98971 1.21782 0.90657 0.94202 0.88549 0.93819 1.86675 1.75517 1.30841 1.42865 1.21559 1.00491 0.93350 0.99095 0.93680 0.93370 0.93905 0.92121 0.93441 0.94743 0.94253 0.91962 0.95833 0.90847 0.91488 0.93794 0.93265 0.91621 0.91619 0.92705 0.78850 0.91730 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 37.16 0.37 -1.95 16 2 C -0.14 -2.89 6.26 -26.74 -0.17 -3.05 16 3 C 0.15 3.19 4.75 -4.04 -0.02 3.17 16 4 N -0.59 -14.69 1.98 -173.23 -0.34 -15.03 16 5 C -0.35 -9.76 9.36 -15.06 -0.14 -9.91 16 6 H 0.05 1.38 7.98 -52.49 -0.42 0.96 16 7 C -0.02 -0.54 4.83 -17.43 -0.08 -0.62 16 8 N -0.91 -27.26 12.38 55.49 0.69 -26.57 16 9 Si 1.06 26.25 30.01 -169.99 -5.10 21.15 16 10 H -0.30 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 C 0.14 3.28 4.36 -4.04 -0.02 3.27 16 14 C -0.09 -1.90 2.22 -90.62 -0.20 -2.10 16 15 H 0.08 1.95 7.68 -51.93 -0.40 1.55 16 16 C -0.10 -1.84 4.34 -26.73 -0.12 -1.95 16 17 C -0.11 -1.70 5.78 -26.73 -0.15 -1.85 16 18 C -0.15 -1.90 5.64 -26.73 -0.15 -2.05 16 19 C 0.11 1.56 3.77 -26.76 -0.10 1.45 16 20 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 21 O -0.55 -8.71 11.97 -35.23 -0.42 -9.13 16 22 C -0.11 -1.86 4.94 -26.75 -0.13 -1.99 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.03 0.68 6.62 -51.93 -0.34 0.33 16 29 H 0.04 0.86 8.04 -51.93 -0.42 0.44 16 30 H 0.27 8.13 6.93 -40.82 -0.28 7.85 16 31 H 0.02 0.51 8.03 -51.93 -0.42 0.09 16 32 H 0.07 1.96 5.25 -51.93 -0.27 1.68 16 33 H 0.07 1.30 6.33 -51.93 -0.33 0.97 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 1.06 7.68 -51.93 -0.40 0.66 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.37 3.93 9.08 45.56 0.41 4.34 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 315.15 15.07 4.75 4.75 Total: -1.00 -30.64 315.15 -8.08 -38.72 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.73 Total: 3.71 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -0.92 Total: -17.58 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 0.34 Total: -41.60 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.42 Total: -9.13 kcal Atomic # 14 Polarization: 26.25 SS G_CDS: -5.10 Total: 21.15 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.64 -8.08 -38.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308886101.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.020 kcal (2) G-P(sol) polarization free energy of solvation -30.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds