Wall clock time and date at job start Mon Mar 30 2020 04:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47666 * 2 1 4 4 N 1.46499 * 109.47503 * 185.35753 * 3 2 1 5 5 C 1.36932 * 119.99699 * 85.10840 * 4 3 2 6 6 H 1.08005 * 119.99945 * 167.14980 * 5 4 3 7 7 C 1.38813 * 120.00315 * 347.15079 * 5 4 3 8 8 N 1.31614 * 120.00070 * 10.73702 * 7 5 4 9 9 Si 1.86794 * 119.99930 * 190.73500 * 7 5 4 10 10 H 1.48504 * 109.47338 * 60.00381 * 9 7 5 11 11 H 1.48507 * 109.47212 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47546 * 299.99973 * 9 7 5 13 13 C 1.46495 * 119.99748 * 265.11266 * 4 3 2 14 14 C 1.53002 * 109.47145 * 274.86130 * 13 4 3 15 15 H 1.09003 * 109.47306 * 54.49654 * 14 13 4 16 16 C 1.53003 * 109.46910 * 294.49515 * 14 13 4 17 17 C 1.53005 * 109.46782 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47057 * 60.00373 * 17 16 14 19 19 C 1.53001 * 109.47227 * 299.99802 * 18 17 16 20 20 H 1.09001 * 109.47318 * 180.02562 * 19 18 17 21 21 O 1.42898 * 109.46904 * 299.99927 * 19 18 17 22 22 C 1.52997 * 109.47278 * 174.49673 * 14 13 4 23 23 H 1.09005 * 109.47062 * 59.99103 * 1 2 3 24 24 H 1.09003 * 109.47114 * 299.99821 * 1 2 3 25 25 H 1.08997 * 109.47613 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47362 * 120.00921 * 2 1 3 27 27 H 1.08998 * 109.46711 * 240.00412 * 2 1 3 28 28 H 1.09000 * 109.47330 * 305.36364 * 3 2 1 29 29 H 1.09011 * 109.46624 * 65.35586 * 3 2 1 30 30 H 0.96996 * 120.00504 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47700 * 34.86404 * 13 4 3 32 32 H 1.08998 * 109.47216 * 154.86473 * 13 4 3 33 33 H 1.08992 * 109.47436 * 299.99672 * 16 14 13 34 34 H 1.08999 * 109.47147 * 60.00600 * 16 14 13 35 35 H 1.08993 * 109.47656 * 300.00355 * 17 16 14 36 36 H 1.09003 * 109.46850 * 180.02562 * 17 16 14 37 37 H 1.09004 * 109.47314 * 179.97438 * 18 17 16 38 38 H 1.09002 * 109.47350 * 59.99863 * 18 17 16 39 39 H 0.96693 * 114.00216 * 300.00113 * 21 19 18 40 40 H 1.09003 * 109.47220 * 299.99979 * 22 14 13 41 41 H 1.09002 * 109.47350 * 60.00156 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.4994 1.4444 -0.1290 5 6 4.0772 1.3810 -1.3688 6 1 5.1305 1.5896 -1.4850 7 6 3.3092 1.0488 -2.4764 8 7 1.9976 1.0019 -2.3775 9 14 4.1372 0.6686 -4.1070 10 1 5.0480 -0.4925 -3.9409 11 1 3.1038 0.3461 -5.1236 12 1 4.9179 1.8503 -4.5533 13 6 4.3404 1.5141 1.0685 14 6 4.5243 2.9767 1.4782 15 1 3.5479 3.4465 1.5964 16 6 5.3171 3.7134 0.3966 17 6 5.5005 5.1762 0.8060 18 6 6.2620 5.2433 2.1313 19 6 5.4693 4.5065 3.2129 20 1 6.0116 4.5547 4.1572 21 8 4.1890 5.1220 3.3675 22 6 5.2861 3.0433 2.8033 23 1 -0.3633 0.5140 -0.8899 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 0.8899 27 1 1.8932 -0.5138 -0.8900 28 1 1.6005 1.9833 -0.8380 29 1 1.7572 1.9278 0.9342 30 1 1.4608 0.7701 -3.1515 31 1 3.8623 0.9666 1.8808 32 1 5.3134 1.0714 0.8554 33 1 6.2935 3.2437 0.2784 34 1 4.7744 3.6661 -0.5475 35 1 4.5240 5.6457 0.9240 36 1 6.0649 5.7012 0.0353 37 1 6.3931 6.2854 2.4228 38 1 7.2387 4.7738 2.0134 39 1 4.2287 6.0527 3.6269 40 1 4.7213 2.5184 3.5739 41 1 6.2626 2.5736 2.6851 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308886102.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:46 Heat of formation + Delta-G solvation = -47.887732 kcal Electronic energy + Delta-G solvation = -18771.618905 eV Core-core repulsion = 16072.435511 eV Total energy + Delta-G solvation = -2699.183394 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.95769 -36.33449 -34.63774 -32.06929 -31.46677 -30.02990 -29.04035 -25.39927 -25.25636 -22.14142 -21.92693 -20.60226 -19.66656 -18.96054 -16.65870 -16.53742 -15.33953 -15.06684 -14.36164 -13.87472 -13.60507 -13.47067 -12.92709 -12.76187 -12.58579 -12.19338 -11.94907 -11.71728 -11.27680 -11.17889 -10.95416 -10.76448 -10.72702 -10.57289 -10.31215 -10.21332 -10.08408 -9.79874 -9.71513 -9.61767 -9.37418 -9.23068 -9.18596 -8.17105 -6.62209 -5.47083 -2.97387 3.44663 3.50849 3.51483 4.45523 4.58564 5.01136 5.02756 5.16140 5.50485 5.53511 5.64590 5.75624 5.79731 5.88742 6.02723 6.07344 6.13325 6.33570 6.37270 6.38926 6.41015 6.46138 6.61221 6.74026 6.75989 6.83362 6.89827 6.96722 7.12104 7.24881 7.31123 7.42837 7.52815 7.79497 7.83145 8.10850 8.19500 8.65780 9.44002 10.05830 10.50030 11.42588 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023347 B = 0.007739 C = 0.006318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.015521 B = 3617.291569 C = 4430.469085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 C 0.168 3.832 4 N -0.602 5.602 5 C -0.231 4.231 6 H 0.071 0.929 7 C -0.009 4.009 8 N -0.904 5.904 9 Si 0.900 3.100 10 H -0.289 1.289 11 H -0.292 1.292 12 H -0.288 1.288 13 C 0.155 3.845 14 C -0.100 4.100 15 H 0.070 0.930 16 C -0.105 4.105 17 C -0.114 4.114 18 C -0.149 4.149 19 C 0.107 3.893 20 H 0.043 0.957 21 O -0.559 6.559 22 C -0.107 4.107 23 H 0.056 0.944 24 H 0.028 0.972 25 H 0.026 0.974 26 H 0.006 0.994 27 H 0.083 0.917 28 H 0.110 0.890 29 H -0.007 1.007 30 H 0.247 0.753 31 H 0.030 0.970 32 H 0.042 0.958 33 H 0.045 0.955 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.368 0.632 40 H 0.061 0.939 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.203 6.277 9.129 12.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.153 4.153 3 C 0.043 3.957 4 N -0.322 5.322 5 C -0.361 4.361 6 H 0.088 0.912 7 C -0.205 4.205 8 N -0.552 5.552 9 Si 0.731 3.269 10 H -0.216 1.216 11 H -0.218 1.218 12 H -0.215 1.215 13 C 0.028 3.972 14 C -0.121 4.121 15 H 0.089 0.911 16 C -0.143 4.143 17 C -0.152 4.152 18 C -0.187 4.187 19 C 0.048 3.952 20 H 0.061 0.939 21 O -0.363 6.363 22 C -0.145 4.145 23 H 0.076 0.924 24 H 0.047 0.953 25 H 0.045 0.955 26 H 0.025 0.975 27 H 0.101 0.899 28 H 0.128 0.872 29 H 0.012 0.988 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.214 0.786 40 H 0.079 0.921 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.889 5.623 8.796 11.528 hybrid contribution 0.731 0.296 -0.650 1.022 sum 5.620 5.919 8.146 11.532 Atomic orbital electron populations 1.21581 0.98608 0.98710 1.00223 1.22079 0.92938 1.00828 0.99482 1.21164 0.82364 0.94505 0.97651 1.44108 1.01647 1.85546 1.00938 1.19237 0.93690 1.38627 0.84516 0.91150 1.24824 0.95649 1.02019 0.97962 1.70108 1.02786 1.54176 1.28147 0.86388 0.78231 0.78283 0.84007 1.21572 1.21842 1.21456 1.20781 0.94585 0.92456 0.89411 1.21727 0.98730 0.99586 0.92084 0.91129 1.21502 0.99494 0.92843 1.00424 1.21470 0.99957 0.98650 0.95124 1.22234 0.99596 0.99543 0.97310 1.21796 0.83745 0.94126 0.95498 0.93870 1.86609 1.29431 1.28245 1.92032 1.21593 1.00859 0.93070 0.98959 0.92450 0.95308 0.95475 0.97490 0.89864 0.87210 0.98846 0.94147 0.95139 0.93955 0.93575 0.89692 0.91866 0.93082 0.92792 0.91546 0.78649 0.92052 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.91 37.16 0.37 -2.39 16 2 C -0.11 -2.71 5.43 -26.73 -0.15 -2.85 16 3 C 0.17 4.17 4.99 -4.04 -0.02 4.15 16 4 N -0.60 -14.89 2.34 -173.24 -0.41 -15.29 16 5 C -0.23 -6.13 8.14 -15.06 -0.12 -6.26 16 6 H 0.07 1.83 7.65 -52.48 -0.40 1.43 16 7 C -0.01 -0.25 5.11 -17.43 -0.09 -0.34 16 8 N -0.90 -24.88 7.63 55.49 0.42 -24.46 16 9 Si 0.90 21.76 29.57 -169.99 -5.03 16.74 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.16 3.26 5.10 -4.04 -0.02 3.24 16 14 C -0.10 -1.85 2.25 -90.62 -0.20 -2.05 16 15 H 0.07 1.49 7.68 -51.93 -0.40 1.09 16 16 C -0.11 -1.91 4.72 -26.73 -0.13 -2.03 16 17 C -0.11 -1.73 5.78 -26.73 -0.15 -1.88 16 18 C -0.15 -1.85 5.64 -26.73 -0.15 -2.00 16 19 C 0.11 1.40 3.77 -26.71 -0.10 1.30 16 20 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 21 O -0.56 -7.74 11.97 -35.23 -0.42 -8.16 16 22 C -0.11 -1.61 4.95 -26.71 -0.13 -1.74 16 23 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 27 H 0.08 2.24 6.25 -51.93 -0.32 1.92 16 28 H 0.11 3.03 5.74 -51.93 -0.30 2.74 16 29 H -0.01 -0.16 8.04 -51.92 -0.42 -0.58 16 30 H 0.25 6.75 8.31 -40.82 -0.34 6.42 16 31 H 0.03 0.63 8.11 -51.93 -0.42 0.21 16 32 H 0.04 0.88 8.00 -51.93 -0.42 0.46 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.84 6.58 -51.93 -0.34 1.50 16 35 H 0.06 1.01 7.68 -51.93 -0.40 0.61 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.37 3.43 9.08 45.56 0.41 3.85 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 311.29 15.07 4.69 4.69 Total: -1.00 -28.16 311.29 -8.42 -36.58 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -6.79 Total: 2.76 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -0.90 Total: -12.85 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.02 Total: -39.75 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -0.42 Total: -8.16 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.16 -8.42 -36.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308886102.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.307 kcal (2) G-P(sol) polarization free energy of solvation -28.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds