Wall clock time and date at job start Mon Mar 30 2020 05:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46765 * 2 1 4 4 C 1.52997 * 109.46943 * 240.00241 * 2 1 3 5 5 C 1.52996 * 109.47131 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.46972 * 60.00459 * 5 4 2 7 7 C 1.52997 * 109.46817 * 299.99733 * 6 5 4 8 8 H 1.09001 * 109.47502 * 300.00518 * 7 6 5 9 9 N 1.46902 * 109.47094 * 179.97438 * 7 6 5 10 10 C 1.46911 * 110.99614 * 85.00357 * 9 7 6 11 11 C 1.52993 * 109.46779 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47454 * 60.00250 * 11 10 9 13 13 O 1.42897 * 109.47565 * 299.99662 * 11 10 9 14 14 C 1.50700 * 109.46821 * 179.97438 * 11 10 9 15 15 H 1.07993 * 120.00202 * 0.02562 * 14 11 10 16 16 C 1.37883 * 120.00119 * 180.02562 * 14 11 10 17 17 N 1.31519 * 119.99879 * 0.02562 * 16 14 11 18 18 Si 1.86795 * 120.00059 * 180.02562 * 16 14 11 19 19 H 1.48494 * 109.47775 * 59.99932 * 18 16 14 20 20 H 1.48506 * 109.47019 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46956 * 299.99512 * 18 16 14 22 22 C 1.52999 * 109.47000 * 120.00585 * 2 1 3 23 23 H 1.08993 * 109.47839 * 60.00073 * 22 2 1 24 24 C 1.52997 * 109.46991 * 299.99626 * 22 2 1 25 25 H 1.09000 * 109.46866 * 299.99600 * 1 2 3 26 26 H 1.09001 * 109.47372 * 60.00008 * 1 2 3 27 27 H 1.09004 * 109.47107 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47289 * 59.99701 * 4 2 1 29 29 H 1.09000 * 109.47611 * 300.00272 * 4 2 1 30 30 H 1.08996 * 109.47452 * 300.00000 * 5 4 2 31 31 H 1.09000 * 109.47054 * 180.02562 * 5 4 2 32 32 H 1.09002 * 109.47070 * 179.97438 * 6 5 4 33 33 H 1.08996 * 109.47407 * 59.99513 * 6 5 4 34 34 H 1.00897 * 111.00496 * 208.95166 * 9 7 6 35 35 H 1.09000 * 109.46786 * 299.99838 * 10 9 7 36 36 H 1.09000 * 109.46923 * 59.99884 * 10 9 7 37 37 H 0.96700 * 113.99844 * 300.00370 * 13 11 10 38 38 H 0.97001 * 119.99859 * 180.02562 * 17 16 14 39 39 H 1.09004 * 109.47261 * 300.00382 * 24 22 2 40 40 H 1.09002 * 109.47153 * 60.00555 * 24 22 2 41 41 H 1.09001 * 109.47289 * 180.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7207 -1.2496 6 6 4.0805 -1.4417 -0.0005 7 6 3.5705 -0.7205 1.2488 8 1 3.9335 0.3073 1.2487 9 7 4.0602 -1.4131 2.4482 10 6 5.4076 -0.9522 2.8091 11 6 5.8822 -1.6939 4.0602 12 1 5.9061 -2.7652 3.8604 13 8 4.9838 -1.4306 5.1397 14 6 7.2647 -1.2215 4.4300 15 1 7.7554 -0.4674 3.8327 16 6 7.9030 -1.7521 5.5310 17 7 7.3056 -2.6708 6.2581 18 14 9.6163 -1.1660 5.9898 19 1 9.5838 0.2933 6.2627 20 1 10.0776 -1.8869 7.2034 21 1 10.5498 -1.4391 4.8677 22 6 2.0400 -0.7214 1.2492 23 1 1.6768 -1.7490 1.2492 24 6 1.5301 -0.0002 2.4984 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6766 -0.2074 -2.1392 29 1 1.6767 -1.7488 -1.2494 30 1 3.9330 0.3071 -1.2498 31 1 3.9333 -1.2341 -2.1399 32 1 5.1705 -1.4417 -0.0009 33 1 3.7175 -2.4694 -0.0003 34 1 3.4199 -1.2974 3.2194 35 1 6.0928 -1.1527 1.9854 36 1 5.3836 0.1190 3.0093 37 1 4.9124 -0.4948 5.3726 38 1 7.7545 -3.0438 7.0329 39 1 1.8934 1.0275 2.4985 40 1 0.4401 -0.0002 2.4985 41 1 1.8937 -0.5138 3.3884 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309090283.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:29 Heat of formation + Delta-G solvation = -85.373295 kcal Electronic energy + Delta-G solvation = -18220.742759 eV Core-core repulsion = 15519.933869 eV Total energy + Delta-G solvation = -2700.808890 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.40889 -36.29124 -34.10239 -32.99698 -32.08057 -30.43376 -27.76154 -26.71652 -25.42979 -23.91236 -21.06464 -20.82671 -20.18745 -19.52418 -16.88979 -15.69976 -14.96525 -14.66123 -14.55662 -14.52052 -14.04617 -13.99524 -13.72383 -12.89002 -12.74388 -12.71517 -12.07651 -12.00780 -11.77634 -11.69390 -11.35528 -11.22682 -10.99208 -10.90488 -10.82200 -10.72041 -10.68371 -10.27568 -10.17211 -9.95039 -9.74444 -8.96333 -8.53931 -8.12981 -7.68599 -5.97416 -4.15714 3.30550 3.35795 3.37554 4.38121 4.56281 4.72262 4.75913 4.98885 5.14748 5.26020 5.29567 5.43318 5.47661 5.51142 5.56653 5.60582 5.75423 5.79462 5.84429 5.95021 5.99272 6.04024 6.11951 6.19566 6.23250 6.25539 6.34988 6.40807 6.42156 6.49576 6.52302 6.68212 6.95067 7.66084 7.79839 7.94117 8.09471 8.29063 8.87940 9.41048 9.61320 11.06854 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.042471 B = 0.004948 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.108715 B = 5657.212093 C = 6053.650225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.066 0.934 4 C -0.113 4.113 5 C -0.119 4.119 6 C -0.107 4.107 7 C 0.092 3.908 8 H 0.034 0.966 9 N -0.685 5.685 10 C 0.037 3.963 11 C 0.232 3.768 12 H 0.063 0.937 13 O -0.565 6.565 14 C -0.573 4.573 15 H 0.054 0.946 16 C 0.080 3.920 17 N -0.859 5.859 18 Si 0.889 3.111 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.086 4.086 23 H 0.076 0.924 24 C -0.155 4.155 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.344 0.656 35 H 0.063 0.937 36 H 0.014 0.986 37 H 0.340 0.660 38 H 0.261 0.739 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.492 5.575 -12.434 17.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.084 0.916 4 C -0.150 4.150 5 C -0.157 4.157 6 C -0.145 4.145 7 C -0.018 4.018 8 H 0.052 0.948 9 N -0.319 5.319 10 C -0.092 4.092 11 C 0.174 3.826 12 H 0.081 0.919 13 O -0.367 6.367 14 C -0.612 4.612 15 H 0.072 0.928 16 C -0.126 4.126 17 N -0.494 5.494 18 Si 0.717 3.283 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.105 4.105 23 H 0.094 0.906 24 C -0.212 4.212 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.165 0.835 35 H 0.081 0.919 36 H 0.032 0.968 37 H 0.183 0.817 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.323 4.226 -12.628 17.480 hybrid contribution 1.035 1.825 0.605 2.183 sum -10.288 6.050 -12.023 16.941 Atomic orbital electron populations 1.21885 0.95486 1.01742 1.01393 1.21133 0.95194 0.99420 0.94639 0.91552 1.21589 0.95763 1.00607 0.97071 1.21541 0.95418 1.00621 0.98134 1.21522 1.00514 0.99679 0.92830 1.21503 0.93044 0.95289 0.91955 0.94793 1.60543 1.04877 1.59587 1.06930 1.22853 0.88959 0.96521 1.00825 1.19414 0.86879 0.95993 0.80308 0.91928 1.86586 1.66837 1.27500 1.55783 1.21610 1.01949 1.24660 1.12967 0.92824 1.25031 0.97321 0.94238 0.96039 1.70077 1.36953 1.26093 1.16298 0.86737 0.84787 0.78918 0.77907 1.20227 1.21185 1.20157 1.21296 0.95024 1.00022 0.94156 0.90555 1.21963 1.00944 1.00316 0.98025 0.92419 0.93104 0.92740 0.92484 0.91972 0.92434 0.92208 0.92071 0.91499 0.83464 0.91886 0.96779 0.81710 0.92965 0.93073 0.92373 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.84 37.16 0.33 -1.02 16 2 C -0.08 -0.90 2.25 -90.62 -0.20 -1.10 16 3 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 4 C -0.11 -1.15 5.20 -26.73 -0.14 -1.29 16 5 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16 6 C -0.11 -1.51 5.42 -26.73 -0.15 -1.66 16 7 C 0.09 1.39 1.97 -67.69 -0.13 1.25 16 8 H 0.03 0.54 7.80 -51.93 -0.41 0.13 16 9 N -0.69 -12.59 6.31 -106.69 -0.67 -13.26 16 10 C 0.04 0.79 5.13 -3.82 -0.02 0.77 16 11 C 0.23 5.98 3.09 -27.89 -0.09 5.89 16 12 H 0.06 1.82 8.14 -51.93 -0.42 1.40 16 13 O -0.57 -14.54 12.07 -35.23 -0.43 -14.96 16 14 C -0.57 -15.99 8.76 -34.44 -0.30 -16.29 16 15 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 16 C 0.08 2.27 5.40 -17.82 -0.10 2.17 16 17 N -0.86 -25.74 12.84 55.43 0.71 -25.03 16 18 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C -0.09 -1.08 1.91 -90.59 -0.17 -1.26 16 23 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 24 C -0.16 -1.88 8.60 37.16 0.32 -1.56 16 25 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.94 7.46 -51.93 -0.39 0.55 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.34 6.33 5.55 -39.29 -0.22 6.12 16 35 H 0.06 1.34 7.44 -51.93 -0.39 0.96 16 36 H 0.01 0.29 8.06 -51.93 -0.42 -0.12 16 37 H 0.34 7.78 9.04 45.56 0.41 8.19 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.61 6.43 -51.93 -0.33 0.28 16 41 H 0.06 0.85 6.21 -51.93 -0.32 0.52 16 LS Contribution 314.61 15.07 4.74 4.74 Total: -1.00 -29.65 314.61 -8.06 -37.71 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -6.58 Total: 10.06 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -0.81 Total: -15.61 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.04 Total: -38.29 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.43 Total: -14.96 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.65 -8.06 -37.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309090283.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.668 kcal (2) G-P(sol) polarization free energy of solvation -29.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds