Wall clock time and date at job start Mon Mar 30 2020 05:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47056 * 2 1 4 4 N 1.46507 * 109.46998 * 119.99879 * 2 1 3 5 5 C 1.36936 * 119.99877 * 307.88301 * 4 2 1 6 6 H 1.08000 * 119.99981 * 60.26031 * 5 4 2 7 7 C 1.38811 * 120.00411 * 240.25720 * 5 4 2 8 8 N 1.31622 * 119.99727 * 8.21815 * 7 5 4 9 9 Si 1.86795 * 120.00203 * 188.21778 * 7 5 4 10 10 H 1.48510 * 109.47029 * 90.00198 * 9 7 5 11 11 H 1.48496 * 109.47290 * 209.99608 * 9 7 5 12 12 H 1.48497 * 109.47240 * 330.00430 * 9 7 5 13 13 C 1.46497 * 119.99985 * 127.88705 * 4 2 1 14 14 C 1.53000 * 110.01845 * 52.44912 * 13 4 2 15 15 C 1.54265 * 110.03204 * 173.84093 * 13 4 2 16 16 C 1.54887 * 104.19587 * 142.89431 * 15 13 4 17 17 C 1.54890 * 102.74785 * 322.05812 * 16 15 13 18 18 C 1.53870 * 110.03347 * 291.00848 * 13 4 2 19 19 C 1.53004 * 110.03080 * 359.97438 * 18 13 4 20 20 O 1.42894 * 110.03392 * 121.43133 * 18 13 4 21 21 H 1.09003 * 109.47238 * 55.74152 * 1 2 3 22 22 H 1.08999 * 109.47875 * 295.74102 * 1 2 3 23 23 H 1.09007 * 109.47192 * 175.74371 * 1 2 3 24 24 H 1.09001 * 109.47646 * 239.99850 * 2 1 3 25 25 H 1.09005 * 109.46791 * 64.86340 * 3 2 1 26 26 H 1.09005 * 109.47127 * 184.85480 * 3 2 1 27 27 H 1.08992 * 109.46838 * 304.86004 * 3 2 1 28 28 H 0.97005 * 119.99891 * 179.97438 * 8 7 5 29 29 H 1.09008 * 109.46982 * 59.29727 * 14 13 4 30 30 H 1.09001 * 109.47192 * 179.29623 * 14 13 4 31 31 H 1.08998 * 109.47324 * 299.30213 * 14 13 4 32 32 H 1.09005 * 110.48700 * 261.57164 * 15 13 4 33 33 H 1.08998 * 110.48467 * 24.08304 * 15 13 4 34 34 H 1.08996 * 110.75644 * 80.37506 * 16 15 13 35 35 H 1.09004 * 110.75787 * 203.74346 * 16 15 13 36 36 H 1.09000 * 110.48326 * 156.62397 * 17 16 15 37 37 H 1.09000 * 110.48405 * 279.12782 * 17 16 15 38 38 H 1.09000 * 109.47104 * 71.07234 * 19 18 13 39 39 H 1.09004 * 109.47030 * 191.07188 * 19 18 13 40 40 H 1.09002 * 109.47172 * 311.07412 * 19 18 13 41 41 H 0.96704 * 113.99735 * 180.02562 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 1.5599 -0.3241 2.4335 6 1 0.5066 -0.3940 2.6616 7 6 2.4490 0.1372 3.3945 8 7 3.7022 0.3763 3.0708 9 14 1.8669 0.4189 5.1469 10 1 2.0481 -0.8268 5.9349 11 1 2.6599 1.5133 5.7621 12 1 0.4301 0.7937 5.1371 13 6 2.9969 -1.7732 1.0688 14 6 4.1956 -1.3011 0.2435 15 6 3.4645 -2.2301 2.4661 16 6 3.6286 -3.7642 2.3289 17 6 2.4396 -4.1548 1.4164 18 6 2.3454 -2.9970 0.4014 19 6 0.8791 -2.7002 0.0804 20 8 3.0505 -3.3357 -0.7944 21 1 -0.3634 0.5785 -0.8494 22 1 -0.3635 0.4463 0.9256 23 1 -0.3634 -1.0249 -0.0763 24 1 1.8933 -0.5138 -0.8899 25 1 1.7494 1.9306 0.9304 26 1 3.1265 1.4438 -0.0870 27 1 1.6072 1.9808 -0.8432 28 1 4.3234 0.6990 3.7423 29 1 4.6571 -0.4425 0.7313 30 1 4.9234 -2.1088 0.1648 31 1 3.8605 -1.0156 -0.7536 32 1 4.4173 -1.7657 2.7203 33 1 2.7119 -1.9906 3.2173 34 1 4.5779 -4.0101 1.8531 35 1 3.5453 -4.2501 3.3011 36 1 2.6445 -5.0952 0.9046 37 1 1.5210 -4.2306 1.9982 38 1 0.8244 -1.9858 -0.7410 39 1 0.3760 -3.6235 -0.2070 40 1 0.3924 -2.2799 0.9605 41 1 2.6871 -4.1002 -1.2621 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313131571.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:57 Heat of formation + Delta-G solvation = -20.783432 kcal Electronic energy + Delta-G solvation = -20252.405642 eV Core-core repulsion = 17554.397579 eV Total energy + Delta-G solvation = -2698.008063 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.29733 -35.75171 -34.05581 -32.27106 -30.35629 -29.45534 -28.01362 -26.20622 -24.70701 -23.80367 -22.71944 -20.15653 -19.29201 -18.29651 -15.99974 -15.49334 -14.93853 -14.86056 -14.39216 -13.69065 -13.58285 -12.85088 -12.62812 -12.26978 -11.98062 -11.79876 -11.58178 -11.34713 -11.26762 -10.93548 -10.83950 -10.79255 -10.60154 -10.56863 -10.33651 -10.18868 -9.95964 -9.85730 -9.59189 -9.37571 -9.29557 -9.04549 -8.91854 -8.10683 -6.15743 -5.64505 -3.59030 3.32311 3.40949 3.42848 4.43935 4.98261 5.33432 5.36541 5.53654 5.67056 5.75803 6.09424 6.13779 6.20050 6.27018 6.40026 6.42514 6.48643 6.60708 6.63307 6.68224 6.71225 6.73397 6.84274 6.86302 6.94283 6.99077 7.01380 7.12718 7.22592 7.33302 7.42096 7.53584 7.61271 7.80643 7.88948 7.90415 8.41165 8.75919 9.37472 9.80630 10.59915 11.22003 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021098 B = 0.013357 C = 0.010584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.846121 B = 2095.759043 C = 2644.957182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.170 3.830 3 C -0.144 4.144 4 N -0.563 5.563 5 C -0.270 4.270 6 H 0.049 0.951 7 C 0.045 3.955 8 N -0.866 5.866 9 Si 0.882 3.118 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.276 1.276 13 C 0.234 3.766 14 C -0.126 4.126 15 C -0.098 4.098 16 C -0.132 4.132 17 C -0.140 4.140 18 C 0.102 3.898 19 C -0.167 4.167 20 O -0.558 6.558 21 H 0.030 0.970 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.046 0.954 25 H 0.058 0.942 26 H 0.044 0.956 27 H 0.020 0.980 28 H 0.254 0.746 29 H 0.064 0.936 30 H 0.032 0.968 31 H 0.033 0.967 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.023 0.977 40 H 0.086 0.914 41 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.413 -5.534 -4.231 7.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.064 3.936 3 C -0.203 4.203 4 N -0.285 5.285 5 C -0.401 4.401 6 H 0.066 0.934 7 C -0.159 4.159 8 N -0.503 5.503 9 Si 0.710 3.290 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.201 1.201 13 C 0.146 3.854 14 C -0.185 4.185 15 C -0.135 4.135 16 C -0.171 4.171 17 C -0.178 4.178 18 C 0.060 3.940 19 C -0.224 4.224 20 O -0.361 6.361 21 H 0.049 0.951 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.039 0.961 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.042 0.958 40 H 0.105 0.895 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -1.879 -4.911 -3.955 6.579 hybrid contribution -0.551 -0.350 0.852 1.074 sum -2.430 -5.261 -3.102 6.573 Atomic orbital electron populations 1.22539 0.98809 1.01120 1.00403 1.20333 0.91525 0.91666 0.90095 1.22088 1.00296 0.98383 0.99572 1.43721 1.48833 1.34486 1.01418 1.18545 0.91999 1.40074 0.89481 0.93402 1.25726 0.96156 0.95428 0.98611 1.70032 1.03406 1.44213 1.32684 0.86671 0.78662 0.77732 0.85916 1.21026 1.21630 1.20148 1.20069 0.88277 0.84549 0.92505 1.21872 0.97918 1.00153 0.98554 1.22660 1.03192 0.89794 0.97849 1.22594 0.97017 0.99714 0.97725 1.22930 0.99133 0.97230 0.98513 1.22924 0.91630 0.96140 0.83344 1.22882 0.96458 0.99477 1.03616 1.86686 1.58514 1.51537 1.39404 0.95056 0.92343 0.92329 0.93583 0.92335 0.93695 0.96059 0.93610 0.91667 0.94939 0.94799 0.90924 0.89039 0.92914 0.93217 0.93234 0.91725 0.91280 0.95809 0.89486 0.80266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.22 8.18 37.15 0.30 -2.92 16 2 C 0.17 3.59 1.61 -67.93 -0.11 3.48 16 3 C -0.14 -3.10 9.33 37.16 0.35 -2.75 16 4 N -0.56 -12.87 0.96 -149.72 -0.14 -13.01 16 5 C -0.27 -6.73 6.21 -15.06 -0.09 -6.82 16 6 H 0.05 1.23 7.16 -52.49 -0.38 0.86 16 7 C 0.04 1.14 3.41 -17.43 -0.06 1.08 16 8 N -0.87 -22.75 10.71 55.49 0.59 -22.16 16 9 Si 0.88 20.30 29.56 -169.99 -5.02 15.27 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 C 0.23 5.15 0.64 -130.71 -0.08 5.07 16 14 C -0.13 -2.85 7.25 37.16 0.27 -2.58 16 15 C -0.10 -2.20 4.04 -25.07 -0.10 -2.30 16 16 C -0.13 -2.52 6.91 -24.74 -0.17 -2.69 16 17 C -0.14 -2.49 6.09 -25.07 -0.15 -2.64 16 18 C 0.10 1.95 1.24 -89.50 -0.11 1.84 16 19 C -0.17 -3.03 6.03 37.16 0.22 -2.80 16 20 O -0.56 -10.08 11.13 -35.23 -0.39 -10.48 16 21 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 1.19 6.95 -51.93 -0.36 0.83 16 23 H 0.06 1.05 4.55 -51.93 -0.24 0.82 16 24 H 0.05 0.98 5.69 -51.93 -0.30 0.69 16 25 H 0.06 1.38 7.71 -51.93 -0.40 0.97 16 26 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 29 H 0.06 1.61 7.74 -51.92 -0.40 1.21 16 30 H 0.03 0.70 7.84 -51.93 -0.41 0.29 16 31 H 0.03 0.75 6.66 -51.93 -0.35 0.40 16 32 H 0.07 1.77 6.73 -51.93 -0.35 1.42 16 33 H 0.09 2.26 5.11 -51.93 -0.27 1.99 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.78 8.06 -51.93 -0.42 0.36 16 37 H 0.06 1.14 7.86 -51.93 -0.41 0.74 16 38 H 0.07 1.27 4.48 -51.93 -0.23 1.03 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.09 1.75 5.86 -51.93 -0.30 1.45 16 41 H 0.35 4.87 9.07 45.56 0.41 5.28 16 LS Contribution 293.25 15.07 4.42 4.42 Total: -1.00 -25.99 293.25 -6.35 -32.33 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -6.06 Total: 7.67 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 0.26 Total: -14.05 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.45 Total: -35.17 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -0.39 Total: -10.48 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -25.99 -6.35 -32.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313131571.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.548 kcal (2) G-P(sol) polarization free energy of solvation -25.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds