Wall clock time and date at job start Mon Mar 30 2020 05:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46992 * 2 1 4 4 N 1.46492 * 109.47214 * 179.97438 * 3 2 1 5 5 C 1.36934 * 120.00412 * 264.78329 * 4 3 2 6 6 H 1.07998 * 120.00842 * 142.82426 * 5 4 3 7 7 C 1.38819 * 119.99521 * 322.82735 * 5 4 3 8 8 N 1.31616 * 120.00207 * 339.14840 * 7 5 4 9 9 Si 1.86802 * 119.99601 * 159.14818 * 7 5 4 10 10 H 1.48497 * 109.47488 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47047 * 119.99998 * 9 7 5 12 12 H 1.48507 * 109.47066 * 239.99900 * 9 7 5 13 13 C 1.46506 * 120.00338 * 84.78396 * 4 3 2 14 14 C 1.53002 * 110.01472 * 6.81061 * 13 4 3 15 15 C 1.54259 * 110.03667 * 128.20045 * 13 4 3 16 16 C 1.54888 * 104.31324 * 95.61151 * 15 13 4 17 17 C 1.55239 * 102.58760 * 37.93205 * 16 15 13 18 18 C 1.53872 * 110.03280 * 245.37435 * 13 4 3 19 19 C 1.52996 * 110.03770 * 121.37958 * 18 13 4 20 20 O 1.42901 * 110.03490 * 359.97438 * 18 13 4 21 21 H 1.09001 * 109.47621 * 300.00243 * 1 2 3 22 22 H 1.09006 * 109.47052 * 60.00372 * 1 2 3 23 23 H 1.08998 * 109.47220 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47463 * 240.00009 * 2 1 3 25 25 H 1.08997 * 109.47327 * 119.99579 * 2 1 3 26 26 H 1.09001 * 109.47136 * 59.99459 * 3 2 1 27 27 H 1.09006 * 109.46919 * 299.99710 * 3 2 1 28 28 H 0.96999 * 119.99849 * 179.97438 * 8 7 5 29 29 H 1.08996 * 109.47310 * 179.97438 * 14 13 4 30 30 H 1.09007 * 109.47187 * 299.94179 * 14 13 4 31 31 H 1.09001 * 109.47094 * 59.93877 * 14 13 4 32 32 H 1.08994 * 110.48979 * 214.35738 * 15 13 4 33 33 H 1.08998 * 110.48790 * 336.86632 * 15 13 4 34 34 H 1.08999 * 110.75933 * 156.32452 * 16 15 13 35 35 H 1.09004 * 110.75725 * 279.69845 * 16 15 13 36 36 H 1.09002 * 110.46559 * 203.39481 * 17 16 15 37 37 H 1.08994 * 110.46591 * 80.77720 * 17 16 15 38 38 H 1.08999 * 109.47402 * 59.99529 * 19 18 13 39 39 H 1.08998 * 109.47528 * 180.02562 * 19 18 13 40 40 H 1.09006 * 109.46842 * 299.99730 * 19 18 13 41 41 H 0.96699 * 114.00356 * 180.02562 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1891 1.5506 1.1818 6 1 5.1045 0.9966 1.3284 7 6 3.7061 2.3724 2.1910 8 7 2.8609 3.3397 1.9041 9 14 4.2557 2.1052 3.9562 10 1 5.2021 0.9623 4.0125 11 1 4.9299 3.3305 4.4556 12 1 3.0724 1.8109 4.8039 13 6 4.2380 1.3271 -1.2625 14 6 3.2642 1.3905 -2.4409 15 6 5.2784 2.4604 -1.3753 16 6 6.5950 1.8238 -0.8650 17 6 6.5137 0.3800 -1.4297 18 6 5.0233 0.0043 -1.2971 19 6 4.5844 -0.8346 -2.4990 20 8 4.8084 -0.7244 -0.0869 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 1.6765 1.9564 0.8899 27 1 1.6766 1.9564 -0.8901 28 1 2.5232 3.9136 2.6094 29 1 3.8185 1.3043 -3.3754 30 1 2.5493 0.5710 -2.3661 31 1 2.7307 2.3409 -2.4207 32 1 5.3853 2.7784 -2.4123 33 1 4.9936 3.3037 -0.7462 34 1 7.4602 2.3505 -1.2675 35 1 6.6212 1.8116 0.2246 36 1 7.1315 -0.2958 -0.8384 37 1 6.8201 0.3620 -2.4755 38 1 4.7753 -0.2805 -3.4180 39 1 5.1456 -1.7689 -2.5144 40 1 3.5192 -1.0523 -2.4205 41 1 5.2778 -1.5689 -0.0475 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313141869.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:10 Heat of formation + Delta-G solvation = -50.375037 kcal Electronic energy + Delta-G solvation = -19877.404619 eV Core-core repulsion = 17178.113368 eV Total energy + Delta-G solvation = -2699.291251 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.77660 -37.05625 -35.44238 -34.12985 -32.69613 -31.69777 -29.84507 -27.40612 -25.97195 -25.68987 -23.65462 -22.14310 -21.27722 -19.50819 -18.23503 -17.51561 -16.56294 -16.31156 -15.86038 -15.57119 -15.00315 -14.66033 -14.60233 -14.14708 -14.12770 -13.40688 -13.32004 -13.05562 -12.95405 -12.72648 -12.54978 -12.38170 -12.30395 -12.05761 -12.00623 -11.79325 -11.76127 -11.68741 -11.24282 -11.19915 -11.05979 -10.93581 -10.32022 -10.25197 -8.26218 -7.60348 -5.14197 1.43163 1.47548 1.56339 2.61316 3.41060 3.51144 3.87124 3.95924 4.07186 4.25418 4.39045 4.49761 4.55416 4.60052 4.65892 4.72806 4.74202 4.79328 4.87405 4.95140 5.02866 5.09030 5.12638 5.18476 5.28789 5.29813 5.32211 5.37427 5.40537 5.46963 5.63456 5.66842 5.73039 5.77869 5.98715 6.06884 6.76023 7.30119 7.45789 8.15907 8.67234 9.35571 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.018920 B = 0.012836 C = 0.009678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.593047 B = 2180.805594 C = 2892.449169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.119 4.119 3 C 0.148 3.852 4 N -0.567 5.567 5 C -0.185 4.185 6 H 0.060 0.940 7 C -0.060 4.060 8 N -0.931 5.931 9 Si 0.937 3.063 10 H -0.272 1.272 11 H -0.300 1.300 12 H -0.300 1.300 13 C 0.193 3.807 14 C -0.141 4.141 15 C -0.123 4.123 16 C -0.114 4.114 17 C -0.137 4.137 18 C 0.111 3.889 19 C -0.163 4.163 20 O -0.543 6.543 21 H 0.037 0.963 22 H 0.057 0.943 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.029 0.971 26 H 0.052 0.948 27 H 0.024 0.976 28 H 0.240 0.760 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.031 0.969 34 H 0.068 0.932 35 H 0.043 0.957 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.264 -8.008 -10.490 13.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.159 4.159 3 C 0.022 3.978 4 N -0.286 5.286 5 C -0.317 4.317 6 H 0.078 0.922 7 C -0.254 4.254 8 N -0.579 5.579 9 Si 0.768 3.232 10 H -0.197 1.197 11 H -0.228 1.228 12 H -0.227 1.227 13 C 0.104 3.896 14 C -0.198 4.198 15 C -0.162 4.162 16 C -0.152 4.152 17 C -0.174 4.174 18 C 0.068 3.932 19 C -0.220 4.220 20 O -0.346 6.346 21 H 0.056 0.944 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.049 0.951 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.050 0.950 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 2.822 -7.374 -10.258 12.945 hybrid contribution 0.405 -0.109 1.434 1.494 sum 3.226 -7.483 -8.825 12.011 Atomic orbital electron populations 1.21674 0.95787 1.01299 1.01047 1.21893 0.94833 0.99368 0.99812 1.20818 0.84149 0.93376 0.99443 1.43746 1.00349 1.83362 1.01109 1.19181 1.06251 1.15209 0.91072 0.92215 1.25671 1.01963 0.96265 1.01497 1.70147 1.37845 1.18883 1.31018 0.85644 0.77133 0.76950 0.83460 1.19721 1.22776 1.22726 1.20671 0.91233 0.91092 0.86595 1.22176 0.99296 1.00919 0.97439 1.22670 0.96078 0.98217 0.99213 1.22388 0.96770 0.96284 0.99751 1.23045 0.96454 0.96527 1.01414 1.22453 0.93656 0.92656 0.84390 1.22516 1.01491 0.99944 0.98086 1.87049 1.73462 1.35186 1.38910 0.94408 0.92422 0.91969 0.92971 0.95257 0.93044 0.95822 0.95091 0.90060 0.92070 0.94330 0.91103 0.94959 0.91303 0.93866 0.91527 0.89456 0.90433 0.91741 0.92946 0.79499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.73 9.91 71.98 0.71 -4.02 16 2 C -0.12 -4.87 6.08 30.59 0.19 -4.68 16 3 C 0.15 7.11 4.59 86.38 0.40 7.51 16 4 N -0.57 -27.43 1.91 -651.16 -1.24 -28.68 16 5 C -0.19 -10.10 6.69 84.04 0.56 -9.54 16 6 H 0.06 3.35 5.68 -2.91 -0.02 3.33 16 7 C -0.06 -3.46 4.92 84.86 0.42 -3.04 16 8 N -0.93 -56.49 11.49 21.65 0.25 -56.24 16 9 Si 0.94 47.40 29.60 68.60 2.03 49.43 16 10 H -0.27 -13.33 7.11 99.48 0.71 -12.62 16 11 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 12 H -0.30 -15.32 7.11 99.48 0.71 -14.62 16 13 C 0.19 7.53 1.12 4.32 0.00 7.53 16 14 C -0.14 -4.71 5.92 71.98 0.43 -4.28 16 15 C -0.12 -4.82 5.55 31.67 0.18 -4.64 16 16 C -0.11 -4.05 6.55 32.01 0.21 -3.84 16 17 C -0.14 -3.97 6.10 31.79 0.19 -3.77 16 18 C 0.11 3.63 1.23 -10.07 -0.01 3.62 16 19 C -0.16 -4.10 7.54 71.98 0.54 -3.56 16 20 O -0.54 -20.34 9.97 -148.98 -1.49 -21.83 16 21 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 23 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.05 1.99 6.29 -2.39 -0.02 1.97 16 25 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.05 2.91 5.54 -2.39 -0.01 2.90 16 27 H 0.02 1.10 6.00 -2.38 -0.01 1.08 16 28 H 0.24 14.31 8.31 -92.71 -0.77 13.54 16 29 H 0.08 2.15 6.65 -2.39 -0.02 2.13 16 30 H 0.06 2.00 4.75 -2.38 -0.01 1.99 16 31 H 0.04 1.40 7.19 -2.39 -0.02 1.38 16 32 H 0.07 2.34 7.85 -2.39 -0.02 2.32 16 33 H 0.03 1.56 7.82 -2.39 -0.02 1.55 16 34 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.04 1.83 6.58 -2.38 -0.02 1.81 16 36 H 0.07 1.83 8.06 -2.39 -0.02 1.81 16 37 H 0.09 2.05 7.84 -2.39 -0.02 2.03 16 38 H 0.08 1.68 6.68 -2.39 -0.02 1.66 16 39 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.05 1.43 6.39 -2.38 -0.02 1.41 16 41 H 0.36 10.26 9.06 -74.06 -0.67 9.59 16 Total: -1.00 -65.43 300.03 3.70 -61.73 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.34 Total: 18.28 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 3.82 Total: -22.71 kcal Atomic # 7 Polarization: -83.92 SS G_CDS: -1.00 Total: -84.92 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -1.49 Total: -21.83 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -65.43 3.70 -61.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313141869.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.359 kcal (2) G-P(sol) polarization free energy of solvation -65.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds