Wall clock time and date at job start Mon Mar 30 2020 05:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47239 * 2 1 4 4 N 1.46495 * 109.47002 * 179.97438 * 3 2 1 5 5 C 1.36940 * 120.00244 * 90.00439 * 4 3 2 6 6 H 1.07997 * 119.99836 * 221.72238 * 5 4 3 7 7 C 1.38813 * 119.99585 * 41.71616 * 5 4 3 8 8 N 1.31615 * 120.00530 * 19.72036 * 7 5 4 9 9 Si 1.86802 * 119.99688 * 199.72176 * 7 5 4 10 10 H 1.48509 * 109.46876 * 269.99896 * 9 7 5 11 11 H 1.48498 * 109.47170 * 29.99866 * 9 7 5 12 12 H 1.48499 * 109.46984 * 150.00190 * 9 7 5 13 13 C 1.46506 * 120.00157 * 269.99900 * 4 3 2 14 14 C 1.53000 * 110.01562 * 10.99624 * 13 4 3 15 15 C 1.54264 * 110.03058 * 132.38294 * 13 4 3 16 16 C 1.54890 * 104.19650 * 142.89610 * 15 13 4 17 17 C 1.54885 * 102.74639 * 322.05880 * 16 15 13 18 18 C 1.53867 * 110.03234 * 249.55279 * 13 4 3 19 19 C 1.52997 * 110.03772 * 359.97438 * 18 13 4 20 20 O 1.42903 * 110.03269 * 121.43425 * 18 13 4 21 21 H 1.09004 * 109.47149 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47457 * 300.00074 * 1 2 3 23 23 H 1.09003 * 109.47186 * 60.00337 * 1 2 3 24 24 H 1.09004 * 109.47085 * 240.00235 * 2 1 3 25 25 H 1.08998 * 109.46803 * 120.00258 * 2 1 3 26 26 H 1.09004 * 109.46890 * 60.00116 * 3 2 1 27 27 H 1.08994 * 109.46977 * 300.00453 * 3 2 1 28 28 H 0.96999 * 119.99676 * 5.85367 * 8 7 5 29 29 H 1.09003 * 109.47390 * 59.29228 * 14 13 4 30 30 H 1.08991 * 109.47183 * 179.29780 * 14 13 4 31 31 H 1.09010 * 109.46719 * 299.29784 * 14 13 4 32 32 H 1.08999 * 110.49113 * 261.57385 * 15 13 4 33 33 H 1.09007 * 110.48617 * 24.08619 * 15 13 4 34 34 H 1.08998 * 110.75540 * 80.37015 * 16 15 13 35 35 H 1.08993 * 110.75789 * 203.74507 * 16 15 13 36 36 H 1.09001 * 110.48875 * 156.62194 * 17 16 15 37 37 H 1.09000 * 110.48754 * 279.12996 * 17 16 15 38 38 H 1.09000 * 109.46968 * 64.45575 * 19 18 13 39 39 H 1.08998 * 109.47449 * 184.46102 * 19 18 13 40 40 H 1.09008 * 109.46741 * 304.46148 * 19 18 13 41 41 H 0.96703 * 113.99579 * 179.97438 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1902 1.4423 -1.1850 6 1 5.0648 0.8198 -1.3031 7 6 3.7606 2.2422 -2.2350 8 7 2.9668 3.2656 -2.0006 9 14 4.3090 1.8662 -3.9806 10 1 5.5711 2.5932 -4.2704 11 1 4.5348 0.4055 -4.1247 12 1 3.2571 2.3010 -4.9344 13 6 4.2370 1.4426 1.2697 14 6 3.2763 1.1686 2.4285 15 6 5.3472 0.3720 1.2394 16 6 6.5229 1.0221 2.0103 17 6 6.4497 2.5023 1.5603 18 6 4.9379 2.7971 1.4737 19 6 4.6514 3.7195 0.2871 20 8 4.4872 3.4037 2.6866 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6766 1.9563 -0.8899 28 1 2.7504 3.5124 -1.0879 29 1 2.7949 0.2019 2.2806 30 1 3.8316 1.1584 3.3662 31 1 2.5176 1.9506 2.4640 32 1 5.0159 -0.5357 1.7438 33 1 5.6373 0.1521 0.2119 34 1 6.3728 0.9376 3.0866 35 1 7.4723 0.5752 1.7153 36 1 6.9228 3.1494 2.2989 37 1 6.9215 2.6286 0.5859 38 1 3.5856 3.9449 0.2512 39 1 5.2150 4.6454 0.4023 40 1 4.9497 3.2252 -0.6375 41 1 4.8934 4.2615 2.8718 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313141872.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:15 Heat of formation + Delta-G solvation = -30.229501 kcal Electronic energy + Delta-G solvation = -19906.883769 eV Core-core repulsion = 17208.466094 eV Total energy + Delta-G solvation = -2698.417675 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.39029 -35.84252 -34.06201 -32.78533 -31.14067 -29.15930 -28.41603 -26.27694 -24.66662 -23.30867 -22.25255 -20.43117 -20.02804 -18.24931 -16.96338 -15.55821 -15.33833 -14.82422 -14.06358 -13.89982 -13.68154 -13.16348 -12.93270 -12.51999 -12.23632 -12.08749 -12.02327 -11.74353 -11.37027 -11.13867 -10.80105 -10.67495 -10.61340 -10.37358 -10.35803 -10.33328 -10.10922 -10.02691 -9.80141 -9.64055 -9.37818 -9.06800 -8.94789 -8.10007 -6.69392 -5.89464 -3.40973 3.47010 3.51543 3.66074 4.54146 4.89321 5.19745 5.29068 5.40396 5.60802 5.63106 5.80271 5.88864 6.01475 6.06292 6.11408 6.14625 6.19850 6.34309 6.36460 6.44524 6.49193 6.51239 6.62690 6.67572 6.71492 6.76675 6.83610 6.87408 6.94749 7.09676 7.17802 7.23411 7.26550 7.47352 7.83808 8.17211 8.41329 8.66903 9.21574 9.83116 10.35435 11.19830 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.018401 B = 0.012714 C = 0.009540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.276209 B = 2201.818394 C = 2934.453941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.138 4.138 3 C 0.136 3.864 4 N -0.580 5.580 5 C -0.338 4.338 6 H 0.051 0.949 7 C -0.017 4.017 8 N -0.910 5.910 9 Si 1.061 2.939 10 H -0.294 1.294 11 H -0.292 1.292 12 H -0.287 1.287 13 C 0.209 3.791 14 C -0.129 4.129 15 C -0.127 4.127 16 C -0.119 4.119 17 C -0.142 4.142 18 C 0.113 3.887 19 C -0.167 4.167 20 O -0.566 6.566 21 H 0.040 0.960 22 H 0.044 0.956 23 H 0.050 0.950 24 H 0.058 0.942 25 H 0.046 0.954 26 H 0.032 0.968 27 H 0.074 0.926 28 H 0.279 0.721 29 H 0.046 0.954 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.011 0.989 40 H 0.120 0.880 41 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.366 -2.720 6.170 7.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.178 4.178 3 C 0.010 3.990 4 N -0.300 5.300 5 C -0.468 4.468 6 H 0.069 0.931 7 C -0.221 4.221 8 N -0.551 5.551 9 Si 0.892 3.108 10 H -0.222 1.222 11 H -0.218 1.218 12 H -0.213 1.213 13 C 0.120 3.880 14 C -0.186 4.186 15 C -0.166 4.166 16 C -0.157 4.157 17 C -0.180 4.180 18 C 0.071 3.929 19 C -0.224 4.224 20 O -0.370 6.370 21 H 0.059 0.941 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.030 0.970 40 H 0.138 0.862 41 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 1.793 -2.810 4.588 5.671 hybrid contribution 0.675 0.136 1.579 1.722 sum 2.468 -2.674 6.167 7.160 Atomic orbital electron populations 1.21722 0.97649 1.00040 1.01032 1.22125 0.93518 1.01172 1.00984 1.21015 0.84328 0.93284 1.00380 1.43999 1.00180 1.85406 1.00426 1.19654 1.13750 1.22145 0.91288 0.93105 1.25893 0.99391 0.92941 1.03837 1.70771 1.36218 1.23149 1.24965 0.83584 0.75914 0.75243 0.76104 1.22175 1.21848 1.21281 1.20308 0.91073 0.89560 0.87036 1.21808 0.99220 1.00188 0.97405 1.22739 0.95278 0.97524 1.01048 1.22362 0.98219 0.95877 0.99214 1.22957 0.97787 0.96562 1.00714 1.22654 0.91479 0.95409 0.83382 1.22772 1.01494 0.96326 1.01776 1.86576 1.70049 1.37060 1.43313 0.94070 0.93700 0.93107 0.92362 0.93525 0.95013 0.90844 0.90682 0.93465 0.93247 0.92660 0.93054 0.89945 0.92451 0.92742 0.92939 0.91190 0.92253 0.97018 0.86197 0.79848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.91 37.16 0.37 -2.11 16 2 C -0.14 -2.76 6.15 -26.73 -0.16 -2.92 16 3 C 0.14 3.07 4.11 -4.05 -0.02 3.06 16 4 N -0.58 -13.47 1.34 -157.17 -0.21 -13.68 16 5 C -0.34 -8.58 6.44 -15.06 -0.10 -8.67 16 6 H 0.05 1.33 6.14 -52.49 -0.32 1.00 16 7 C -0.02 -0.43 3.93 -17.43 -0.07 -0.50 16 8 N -0.91 -25.25 11.75 55.49 0.65 -24.60 16 9 Si 1.06 24.21 29.96 -169.99 -5.09 19.12 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.21 4.35 1.04 -130.70 -0.14 4.22 16 14 C -0.13 -2.51 6.35 37.16 0.24 -2.27 16 15 C -0.13 -2.46 5.92 -25.07 -0.15 -2.61 16 16 C -0.12 -2.01 6.91 -24.74 -0.17 -2.18 16 17 C -0.14 -2.55 6.09 -25.07 -0.15 -2.70 16 18 C 0.11 2.27 1.29 -89.50 -0.12 2.16 16 19 C -0.17 -3.78 6.63 37.16 0.25 -3.53 16 20 O -0.57 -10.61 11.13 -35.23 -0.39 -11.01 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.05 0.90 6.06 -51.93 -0.31 0.59 16 26 H 0.03 0.71 6.02 -51.93 -0.31 0.40 16 27 H 0.07 1.88 5.57 -51.93 -0.29 1.59 16 28 H 0.28 7.75 4.00 -40.82 -0.16 7.58 16 29 H 0.05 0.89 5.94 -51.93 -0.31 0.58 16 30 H 0.05 0.91 7.84 -51.93 -0.41 0.50 16 31 H 0.05 1.13 6.36 -51.92 -0.33 0.80 16 32 H 0.05 0.94 7.84 -51.93 -0.41 0.53 16 33 H 0.08 1.75 5.76 -51.93 -0.30 1.45 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.83 8.06 -51.93 -0.42 0.42 16 37 H 0.07 1.31 7.86 -51.93 -0.41 0.90 16 38 H 0.06 1.49 5.78 -51.93 -0.30 1.19 16 39 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.12 3.05 4.05 -51.92 -0.21 2.84 16 41 H 0.36 5.39 9.07 45.56 0.41 5.81 16 LS Contribution 293.61 15.07 4.42 4.42 Total: -1.00 -27.01 293.61 -6.67 -33.68 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -5.83 Total: 10.11 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -0.22 Total: -18.06 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.44 Total: -38.28 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -0.39 Total: -11.01 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -5.09 Total: 19.12 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.01 -6.67 -33.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313141872.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.455 kcal (2) G-P(sol) polarization free energy of solvation -27.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds