Wall clock time and date at job start Mon Mar 30 2020 05:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47492 * 2 1 4 4 N 1.46496 * 109.47504 * 185.17857 * 3 2 1 5 5 C 1.36932 * 119.99914 * 265.31481 * 4 3 2 6 6 H 1.08003 * 119.99991 * 145.93142 * 5 4 3 7 7 C 1.38813 * 120.00052 * 325.93445 * 5 4 3 8 8 N 1.31622 * 120.00137 * 164.49578 * 7 5 4 9 9 Si 1.86799 * 119.99724 * 344.49402 * 7 5 4 10 10 H 1.48499 * 109.47214 * 95.50087 * 9 7 5 11 11 H 1.48505 * 109.47175 * 215.49655 * 9 7 5 12 12 H 1.48498 * 109.47225 * 335.50056 * 9 7 5 13 13 C 1.46502 * 119.99980 * 85.31163 * 4 3 2 14 14 C 1.53000 * 110.02003 * 354.92911 * 13 4 3 15 15 C 1.54268 * 110.07247 * 233.50995 * 13 4 3 16 16 C 1.55231 * 104.23343 * 264.30849 * 15 13 4 17 17 C 1.54889 * 102.58791 * 322.08076 * 16 15 13 18 18 C 1.53874 * 110.03186 * 116.32226 * 13 4 3 19 19 C 1.53002 * 110.07129 * 0.02704 * 18 13 4 20 20 O 1.42895 * 110.03126 * 238.61725 * 18 13 4 21 21 H 1.09001 * 109.47327 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.46673 * 300.00215 * 1 2 3 23 23 H 1.08999 * 109.46658 * 60.00169 * 1 2 3 24 24 H 1.09007 * 109.46762 * 239.99517 * 2 1 3 25 25 H 1.09006 * 109.46730 * 120.00223 * 2 1 3 26 26 H 1.08994 * 109.47421 * 65.16886 * 3 2 1 27 27 H 1.09004 * 109.46666 * 305.17500 * 3 2 1 28 28 H 0.96998 * 119.99963 * 179.97438 * 8 7 5 29 29 H 1.08995 * 109.47075 * 181.39095 * 14 13 4 30 30 H 1.09001 * 109.46797 * 301.39450 * 14 13 4 31 31 H 1.08996 * 109.47012 * 61.39069 * 14 13 4 32 32 H 1.09002 * 110.48427 * 22.98833 * 15 13 4 33 33 H 1.08997 * 110.48577 * 145.49230 * 15 13 4 34 34 H 1.09008 * 110.89420 * 203.79209 * 16 15 13 35 35 H 1.08997 * 110.76951 * 80.31691 * 16 15 13 36 36 H 1.09004 * 110.48730 * 279.18864 * 17 16 15 37 37 H 1.09002 * 110.48629 * 156.67748 * 17 16 15 38 38 H 1.09005 * 109.46679 * 187.20614 * 19 18 13 39 39 H 1.08999 * 109.46765 * 307.20151 * 19 18 13 40 40 H 1.08994 * 109.47378 * 67.20304 * 19 18 13 41 41 H 0.96702 * 114.00098 * 181.37870 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.4998 1.4443 -0.1247 5 6 4.2826 1.5064 0.9971 6 1 5.2300 0.9885 1.0238 7 6 3.8586 2.2350 2.0999 8 7 4.4378 2.0573 3.2684 9 14 2.4660 3.4677 1.9256 10 1 1.1848 2.8256 2.3150 11 1 2.7236 4.6337 2.8084 12 1 2.3823 3.9238 0.5149 13 6 4.1219 1.3796 -1.4495 14 6 3.0487 1.1910 -2.5235 15 6 5.1334 0.2161 -1.5032 16 6 6.5001 0.8840 -1.1938 17 6 6.3866 2.2419 -1.9302 18 6 4.9187 2.6677 -1.7210 19 6 4.8129 3.6130 -0.5227 20 8 4.4232 3.3110 -2.8968 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3632 0.5138 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 1.8933 -0.5140 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.7544 1.9289 0.9326 27 1 1.6031 1.9823 -0.8401 28 1 4.1417 2.5667 4.0390 29 1 3.5228 1.1193 -3.5023 30 1 2.4902 0.2768 -2.3224 31 1 2.3684 2.0425 -2.5108 32 1 4.8949 -0.5319 -0.7471 33 1 5.1433 -0.2353 -2.4952 34 1 7.3221 0.2929 -1.5979 35 1 6.6225 1.0352 -0.1213 36 1 6.6006 2.1192 -2.9920 37 1 7.0628 2.9735 -1.4879 38 1 5.2708 4.5700 -0.7734 39 1 3.7632 3.7669 -0.2729 40 1 5.3295 3.1758 0.3317 41 1 4.8991 4.1190 -3.1333 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313141874.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:18 Heat of formation + Delta-G solvation = -17.788041 kcal Electronic energy + Delta-G solvation = -20000.729479 eV Core-core repulsion = 17302.851306 eV Total energy + Delta-G solvation = -2697.878173 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.52963 -35.94368 -34.13535 -32.57065 -31.34758 -29.80267 -28.75506 -26.29930 -24.61388 -23.82641 -22.14879 -20.96326 -20.09505 -18.13898 -16.78836 -16.03785 -15.59444 -14.60067 -14.42605 -13.88455 -13.72657 -13.33130 -13.15430 -12.49692 -12.35040 -12.21837 -12.05981 -11.98120 -11.79442 -11.46172 -11.00369 -10.81999 -10.68781 -10.58765 -10.42146 -10.27072 -10.18598 -9.87418 -9.78858 -9.68809 -9.43939 -9.17058 -8.82828 -8.41541 -6.78856 -5.94609 -3.33750 3.31285 3.45643 3.48838 4.50605 4.68618 5.05540 5.21964 5.34151 5.50961 5.64891 5.65333 5.74815 5.97948 5.98862 6.00422 6.03706 6.13616 6.23452 6.26172 6.32766 6.39332 6.46717 6.50538 6.55039 6.59129 6.60874 6.74153 6.78201 6.88952 6.94301 6.97570 7.09419 7.14297 7.18744 7.61433 8.08022 8.31520 8.41752 9.01670 9.73829 10.14376 11.20150 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019494 B = 0.013645 C = 0.010874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.994171 B = 2051.486365 C = 2574.359709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.143 4.143 3 C 0.135 3.865 4 N -0.593 5.593 5 C -0.250 4.250 6 H 0.091 0.909 7 C 0.027 3.973 8 N -0.909 5.909 9 Si 0.881 3.119 10 H -0.292 1.292 11 H -0.309 1.309 12 H -0.257 1.257 13 C 0.213 3.787 14 C -0.134 4.134 15 C -0.122 4.122 16 C -0.119 4.119 17 C -0.145 4.145 18 C 0.118 3.882 19 C -0.178 4.178 20 O -0.565 6.565 21 H 0.046 0.954 22 H 0.048 0.952 23 H 0.046 0.954 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.043 0.957 28 H 0.262 0.738 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.016 0.984 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.976 -0.695 -9.898 9.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.182 4.182 3 C 0.010 3.990 4 N -0.315 5.315 5 C -0.378 4.378 6 H 0.108 0.892 7 C -0.172 4.172 8 N -0.551 5.551 9 Si 0.715 3.285 10 H -0.222 1.222 11 H -0.238 1.238 12 H -0.183 1.183 13 C 0.124 3.876 14 C -0.191 4.191 15 C -0.161 4.161 16 C -0.157 4.157 17 C -0.183 4.183 18 C 0.076 3.924 19 C -0.234 4.234 20 O -0.370 6.370 21 H 0.065 0.935 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.035 0.965 39 H 0.092 0.908 40 H 0.124 0.876 41 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -1.378 -1.149 -9.695 9.859 hybrid contribution -0.347 1.306 0.161 1.361 sum -1.726 0.158 -9.534 9.690 Atomic orbital electron populations 1.21758 0.97478 1.00559 1.01018 1.22175 0.93712 1.00291 1.02046 1.21232 0.84746 0.94239 0.98737 1.44284 1.00255 1.85693 1.01229 1.18783 1.04148 1.25019 0.89892 0.89205 1.25417 0.97721 0.98119 0.95923 1.69776 1.43512 1.42472 0.99389 0.87114 0.82116 0.81706 0.77525 1.22163 1.23808 1.18349 1.20202 0.91562 0.90430 0.85430 1.21856 0.98717 1.00798 0.97763 1.22742 0.95126 0.98226 1.00028 1.22504 0.96591 0.95011 1.01567 1.22985 0.97492 0.98263 0.99560 1.22576 0.91701 0.94151 0.84012 1.22924 1.04700 0.95729 1.00069 1.86562 1.61755 1.42364 1.46313 0.93519 0.93330 0.93438 0.92299 0.91751 0.93477 0.93893 0.92829 0.92819 0.92930 0.92602 0.90831 0.92896 0.93119 0.89852 0.92239 0.92332 0.96516 0.90838 0.87615 0.79557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.91 37.16 0.37 -2.02 16 2 C -0.14 -2.69 6.05 -26.73 -0.16 -2.85 16 3 C 0.14 2.91 3.50 -4.05 -0.01 2.90 16 4 N -0.59 -13.24 1.26 -157.17 -0.20 -13.44 16 5 C -0.25 -6.39 6.08 -15.06 -0.09 -6.48 16 6 H 0.09 2.46 5.54 -52.48 -0.29 2.16 16 7 C 0.03 0.74 4.87 -17.43 -0.08 0.66 16 8 N -0.91 -26.81 13.97 55.49 0.78 -26.03 16 9 Si 0.88 22.10 22.69 -169.99 -3.86 18.25 16 10 H -0.29 -7.32 6.80 56.52 0.38 -6.94 16 11 H -0.31 -8.01 7.11 56.52 0.40 -7.61 16 12 H -0.26 -6.23 4.99 56.52 0.28 -5.95 16 13 C 0.21 4.18 1.11 -130.70 -0.15 4.03 16 14 C -0.13 -2.40 6.28 37.16 0.23 -2.17 16 15 C -0.12 -2.23 5.46 -24.89 -0.14 -2.37 16 16 C -0.12 -2.10 6.54 -24.55 -0.16 -2.26 16 17 C -0.14 -2.45 6.07 -25.07 -0.15 -2.60 16 18 C 0.12 2.23 1.28 -89.50 -0.11 2.11 16 19 C -0.18 -3.78 6.70 37.16 0.25 -3.53 16 20 O -0.57 -9.86 11.12 -35.23 -0.39 -10.25 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 1.05 5.96 -51.92 -0.31 0.74 16 25 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 26 H 0.05 1.12 2.50 -51.93 -0.13 0.99 16 27 H 0.04 0.89 6.14 -51.93 -0.32 0.57 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.05 0.90 7.84 -51.93 -0.41 0.50 16 30 H 0.05 0.89 5.61 -51.93 -0.29 0.60 16 31 H 0.05 1.05 6.55 -51.93 -0.34 0.71 16 32 H 0.07 1.45 7.83 -51.93 -0.41 1.04 16 33 H 0.05 0.87 7.83 -51.93 -0.41 0.46 16 34 H 0.05 0.78 8.14 -51.92 -0.42 0.35 16 35 H 0.08 1.67 6.16 -51.93 -0.32 1.35 16 36 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 37 H 0.06 0.96 7.84 -51.93 -0.41 0.55 16 38 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.07 1.72 3.50 -51.93 -0.18 1.54 16 40 H 0.11 2.52 5.36 -51.93 -0.28 2.24 16 41 H 0.36 4.92 9.08 45.56 0.41 5.33 16 LS Contribution 284.79 15.07 4.29 4.29 Total: -1.00 -28.35 284.79 -5.49 -33.84 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -5.90 Total: 7.92 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -0.21 Total: -14.58 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.58 Total: -39.47 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: -0.39 Total: -10.25 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -3.86 Total: 18.25 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.35 -5.49 -33.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313141874.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.055 kcal (2) G-P(sol) polarization free energy of solvation -28.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds